CX295509

Overview
NameCX295509
Unique NameCX295509
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length393
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10260 contig Ccv1_Contig10260:1106..1498. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295509 vs. ExPASy Swiss-Prot
Match: CHS3_GERHY (Chalcone synthase 3 OS=Gerbera hybrida GN=CHS3 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.041e-12
Identity = 31/38 (81.58%), Postives = 36/38 (94.74%), Query Frame = 3
Query:    3 KKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVP 116
            KKS+++ K TTGEGL+WGVLFGFGPGLTVETVVLHS+P
Sbjct:  357 KKSIKDGKTTTGEGLEWGVLFGFGPGLTVETVVLHSLP 394          
BLAST of CX295509 vs. ExPASy Swiss-Prot
Match: ACS4_RUTGR (Probable acridone synthase 4 OS=Ruta graveolens GN=ACS4 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.041e-12
Identity = 32/40 (80.00%), Postives = 38/40 (95.00%), Query Frame = 3
Query:    6 KSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 125
            +S+++ K+TTGEGLDWGVLFGFGPGLTVETVVL SVPI+A
Sbjct:  352 RSLQDGKSTTGEGLDWGVLFGFGPGLTVETVVLRSVPIEA 391          
BLAST of CX295509 vs. ExPASy Swiss-Prot
Match: THS3_VITVI (Stilbene synthase 3 (Fragment) OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.359e-12
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 3
Query:    3 KKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 119
            KKS +  KATTGEGLDWGVLFGFGPGLT+ETVVLHS+P+
Sbjct:  348 KKSHKGEKATTGEGLDWGVLFGFGPGLTIETVVLHSIPM 386          
BLAST of CX295509 vs. ExPASy Swiss-Prot
Match: CHSY_RAPSA (Chalcone synthase OS=Raphanus sativus GN=CHS PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.359e-12
Identity = 31/39 (79.49%), Postives = 37/39 (94.87%), Query Frame = 3
Query:    3 KKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 119
            +KS+++  ATTGEGL+WGVLFGFGPGLTVETVVLHSVP+
Sbjct:  356 RKSLDDGVATTGEGLEWGVLFGFGPGLTVETVVLHSVPV 394          
BLAST of CX295509 vs. ExPASy Swiss-Prot
Match: CHSY_CARAN (Chalcone synthase OS=Cardamine amara GN=CHS PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.359e-12
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 3
Query:    3 KKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 119
            KKS ++  ATTGEGL+WGVLFGFGPGLTVETVVLHSVP+
Sbjct:  357 KKSAKDGVATTGEGLEWGVLFGFGPGLTVETVVLHSVPL 395          
BLAST of CX295509 vs. ExPASy Swiss-Prot
Match: CHSY_ANTMA (Chalcone synthase OS=Antirrhinum majus GN=CHS PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.359e-12
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 3
Query:    3 KKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 119
            K S +E  +TTGEGLDWGVLFGFGPGLTVETVVLHSVP+
Sbjct:  351 KSSAKEGMSTTGEGLDWGVLFGFGPGLTVETVVLHSVPL 389          
BLAST of CX295509 vs. ExPASy Swiss-Prot
Match: CHS3_SINAL (Chalcone synthase 3 OS=Sinapis alba GN=CHS3 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.359e-12
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 3
Query:    3 KKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 119
            +KS E+  ATTGEGL+WGVLFGFGPGLTVETVVLHSVP+
Sbjct:  357 RKSKEDGVATTGEGLEWGVLFGFGPGLTVETVVLHSVPV 395          
BLAST of CX295509 vs. ExPASy Swiss-Prot
Match: ACS3_RUTGR (Probable acridone synthase 3 OS=Ruta graveolens GN=ACS3 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.359e-12
Identity = 31/40 (77.50%), Postives = 38/40 (95.00%), Query Frame = 3
Query:    6 KSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 125
            +S+++ K+TTGEGLDWGVLFGFGPGLTVET+VL SVPI+A
Sbjct:  352 RSLQDGKSTTGEGLDWGVLFGFGPGLTVETIVLRSVPIEA 391          
BLAST of CX295509 vs. ExPASy Swiss-Prot
Match: THS7_VITVI (Stilbene synthase 6 OS=Vitis vinifera GN=STS PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.319e-12
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 3
Query:    3 KKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVP 116
            KKS++   ATTGEGLDWGVLFGFGPGLT+ETVVLHS+P
Sbjct:  351 KKSLKGENATTGEGLDWGVLFGFGPGLTIETVVLHSIP 388          
BLAST of CX295509 vs. ExPASy Swiss-Prot
Match: CHSY_PERFR (Chalcone synthase OS=Perilla frutescens GN=CHS PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.319e-12
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 3
Query:    3 KKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 119
            K S +E  ++TGEGLDWGVLFGFGPGLTVETVVLHSVPI
Sbjct:  351 KSSAKEGMSSTGEGLDWGVLFGFGPGLTVETVVLHSVPI 389          
The following BLAST results are available for this feature:
BLAST of CX295509 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
CHS3_GERHY1.041e-1281.58Chalcone synthase 3 OS=Gerbera hybrida GN=CHS3 PE=... [more]
ACS4_RUTGR1.041e-1280.00Probable acridone synthase 4 OS=Ruta graveolens GN... [more]
THS3_VITVI1.359e-1282.05Stilbene synthase 3 (Fragment) OS=Vitis vinifera P... [more]
CHSY_RAPSA1.359e-1279.49Chalcone synthase OS=Raphanus sativus GN=CHS PE=2 ... [more]
CHSY_CARAN1.359e-1282.05Chalcone synthase OS=Cardamine amara GN=CHS PE=3 S... [more]
CHSY_ANTMA1.359e-1282.05Chalcone synthase OS=Antirrhinum majus GN=CHS PE=3... [more]
CHS3_SINAL1.359e-1282.05Chalcone synthase 3 OS=Sinapis alba GN=CHS3 PE=2 S... [more]
ACS3_RUTGR1.359e-1277.50Probable acridone synthase 3 OS=Ruta graveolens GN... [more]
THS7_VITVI2.319e-1281.58Stilbene synthase 6 OS=Vitis vinifera GN=STS PE=2 ... [more]
CHSY_PERFR2.319e-1282.05Chalcone synthase OS=Perilla frutescens GN=CHS PE=... [more]

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Properties
Property NameValue
Genbank descriptionC05072H12SK PhIFruit1 Citrus clementina cDNA clone C05072H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295509 ID=CX295509; Name=CX295509; organism=Citrus clementina; type=EST; length=393bp
GGAAGAAGTCTGTTGAGGAAGCGAAAGCCACCACCGGCGAAGGGCTTGAT
TGGGGTGTGCTGTTCGGGTTCGGGCCGGGGCTCACCGTCGAGACCGTTGT
GCTGCACAGTGTCCCCATCAAAGCTTGAAGTGAGAACTCCATCAGTATGT
TTAGTAGTTCAGTAACTTTATGTTGTATGCTTTCACAGTTGAATTATTGG
TTGATCGTGTGAAGGTTTAGTTTTGTCAATTGAGTTTAAGGCATCGTGCC
TTTTCTCTTATGACGTCACCAAACCTGGGCAACGCTTTGTGTTTAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAACCTCGGGGGGGGGCCCGGT
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