CX295509

Overview
NameCX295509
Unique NameCX295509
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length393
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10260 contig Ccv1_Contig10260:1106..1498. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295509 vs. ExPASy Swiss-Prot
Match: BBS_PHASS (Bibenzyl synthase OS=Phalaenopsis sp. GN=BIBSY212 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.319e-12
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 3
Query:    3 KKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 119
            K+S  E KATTGEGL+WGVLFGFGPGLTVETVVL SVP+
Sbjct:  352 KRSANEGKATTGEGLEWGVLFGFGPGLTVETVVLRSVPL 390          
BLAST of CX295509 vs. ExPASy Swiss-Prot
Match: CHSY_BETVE (Chalcone synthase OS=Betula verrucosa GN=CHS PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 3.028e-12
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 3
Query:    3 KKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 119
            + S+E  K TTGEGL+WGVLFGFGPGLTVETVVLHSVP+
Sbjct:  351 RNSLEGGKVTTGEGLEWGVLFGFGPGLTVETVVLHSVPV 389          
BLAST of CX295509 vs. ExPASy Swiss-Prot
Match: CHSY_ARATH (Chalcone synthase OS=Arabidopsis thaliana GN=CHS PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.028e-12
Identity = 31/39 (79.49%), Postives = 36/39 (92.31%), Query Frame = 3
Query:    3 KKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 119
            +KS ++  ATTGEGL+WGVLFGFGPGLTVETVVLHSVP+
Sbjct:  357 RKSAKDGVATTGEGLEWGVLFGFGPGLTVETVVLHSVPL 395          
BLAST of CX295509 vs. ExPASy Swiss-Prot
Match: CHSY_DIACA (Chalcone synthase OS=Dianthus caryophyllus GN=CHS PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.165e-12
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 3
Query:    3 KKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 119
            KKS+ +   TTGEGLDWGVLFGFGP LTVETVVLHSVP+
Sbjct:  351 KKSLRDGATTTGEGLDWGVLFGFGPSLTVETVVLHSVPL 389          
BLAST of CX295509 vs. ExPASy Swiss-Prot
Match: CHS1_GERHY (Chalcone synthase 1 OS=Gerbera hybrida GN=CHS1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.165e-12
Identity = 32/38 (84.21%), Postives = 33/38 (86.84%), Query Frame = 3
Query:    3 KKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVP 116
            KKS E    TTGEGL+WGVLFGFGPGLTVETVVLHSVP
Sbjct:  354 KKSSENGAGTTGEGLEWGVLFGFGPGLTVETVVLHSVP 391          
BLAST of CX295509 vs. ExPASy Swiss-Prot
Match: CHSY_CHRAE (Chalcone synthase OS=Chrysosplenium americanum GN=CHS PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.746e-12
Identity = 31/38 (81.58%), Postives = 34/38 (89.47%), Query Frame = 3
Query:    3 KKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVP 116
            KKS    +ATTG+GL+WGVLFGFGPGLTVETVVLHSVP
Sbjct:  355 KKSARRREATTGDGLEWGVLFGFGPGLTVETVVLHSVP 392          
BLAST of CX295509 vs. ExPASy Swiss-Prot
Match: CHS1_MEDSA (Chalcone synthase 1 OS=Medicago sativa GN=CHS1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.746e-12
Identity = 32/39 (82.05%), Postives = 34/39 (87.18%), Query Frame = 3
Query:    3 KKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 119
            KKSV+    TTGEGLDWGVLFGFGPGLT+ETVVLHSV I
Sbjct:  351 KKSVQAGLKTTGEGLDWGVLFGFGPGLTIETVVLHSVAI 389          
BLAST of CX295509 vs. ExPASy Swiss-Prot
Match: CHSY_MATIN (Chalcone synthase OS=Matthiola incana GN=CHS PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.810e-12
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 3
Query:    3 KKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 119
            KKS ++  ATTGEGL+WGVLFGFGPGLTVETVVL SVP+
Sbjct:  356 KKSAQDGVATTGEGLEWGVLFGFGPGLTVETVVLRSVPL 394          
BLAST of CX295509 vs. ExPASy Swiss-Prot
Match: CHS6_PEA (Chalcone synthase 6 OS=Pisum sativum GN=CHS6 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.810e-12
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 3
Query:    3 KKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 119
            KKS ++   TTGEGLDWGVLFGFGPGLT+ETVVLHSV I
Sbjct:  351 KKSAQQGLKTTGEGLDWGVLFGFGPGLTIETVVLHSVAI 389          
BLAST of CX295509 vs. ExPASy Swiss-Prot
Match: VPS_HUMLU (Phloroisovalerophenone synthase OS=Humulus lupulus GN=VPS PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.151e-11
Identity = 30/38 (78.95%), Postives = 35/38 (92.11%), Query Frame = 3
Query:    3 KKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVP 116
            K+S +E K+TTG+GL+WG LFGFGPGLTVETVVLHSVP
Sbjct:  354 KQSSKEGKSTTGDGLEWGALFGFGPGLTVETVVLHSVP 391          
The following BLAST results are available for this feature:
BLAST of CX295509 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
BBS_PHASS2.319e-1282.05Bibenzyl synthase OS=Phalaenopsis sp. GN=BIBSY212 ... [more]
CHSY_BETVE3.028e-1279.49Chalcone synthase OS=Betula verrucosa GN=CHS PE=2 ... [more]
CHSY_ARATH3.028e-1279.49Chalcone synthase OS=Arabidopsis thaliana GN=CHS P... [more]
CHSY_DIACA5.165e-1279.49Chalcone synthase OS=Dianthus caryophyllus GN=CHS ... [more]
CHS1_GERHY5.165e-1284.21Chalcone synthase 1 OS=Gerbera hybrida GN=CHS1 PE=... [more]
CHSY_CHRAE6.746e-1281.58Chalcone synthase OS=Chrysosplenium americanum GN=... [more]
CHS1_MEDSA6.746e-1282.05Chalcone synthase 1 OS=Medicago sativa GN=CHS1 PE=... [more]
CHSY_MATIN8.810e-1279.49Chalcone synthase OS=Matthiola incana GN=CHS PE=2 ... [more]
CHS6_PEA8.810e-1279.49Chalcone synthase 6 OS=Pisum sativum GN=CHS6 PE=2 ... [more]
VPS_HUMLU1.151e-1178.95Phloroisovalerophenone synthase OS=Humulus lupulus... [more]

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Properties
Property NameValue
Genbank descriptionC05072H12SK PhIFruit1 Citrus clementina cDNA clone C05072H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295509 ID=CX295509; Name=CX295509; organism=Citrus clementina; type=EST; length=393bp
GGAAGAAGTCTGTTGAGGAAGCGAAAGCCACCACCGGCGAAGGGCTTGAT
TGGGGTGTGCTGTTCGGGTTCGGGCCGGGGCTCACCGTCGAGACCGTTGT
GCTGCACAGTGTCCCCATCAAAGCTTGAAGTGAGAACTCCATCAGTATGT
TTAGTAGTTCAGTAACTTTATGTTGTATGCTTTCACAGTTGAATTATTGG
TTGATCGTGTGAAGGTTTAGTTTTGTCAATTGAGTTTAAGGCATCGTGCC
TTTTCTCTTATGACGTCACCAAACCTGGGCAACGCTTTGTGTTTAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAACCTCGGGGGGGGGCCCGGT
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