CX295519

Overview
NameCX295519
Unique NameCX295519
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RB33A_HUMAN (Ras-related protein Rab-33A OS=Homo sapiens GN=RAB33A PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 9.379e-23
Identity = 51/121 (42.15%), Postives = 81/121 (66.94%), Query Frame = 1
Query:  295 LFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYR-AITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV-IMLVGNKADLR 651
            +FK+++IGDS VGK+ L  RF    F  ++++TIGV+F  +++ ++ + +K Q+WDTAGQER+R ++   YYR     + VYDVT+  +F N++ W++E   H    +V  +LVGNK DLR
Sbjct:   36 IFKIIVIGDSNVGKTCLTFRFCGGTFPDKTEATIGVDFREKTVEIEGEKIKVQVWDTAGQERFRKSMVEHYYRNVHAVVFVYDVTKMTSFTNLKMWIQECNGHAVPPLVPKVLVGNKCDLR 156          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RABT2_DICDI (Ras-related protein RabT2 OS=Dictyostelium discoideum GN=rabT2 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.379e-23
Identity = 58/128 (45.31%), Postives = 82/128 (64.06%), Query Frame = 1
Query:  274 ADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIR-VDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKEL--RDHTDSNIVIMLVGNKADL 648
            ADDDY+ L KV+++GD   GK ++L R+  NEF L   S+IGV+F  R    V+ K  K QIWD    ER+R+IT AYYRGA G +L+YD T   +F N++ W+ E+  +    +N  I+++GNK DL
Sbjct:   19 ADDDYE-LIKVLMLGDYKTGKGSVLRRYHYNEFEL-GVSSIGVDFVIRDYGIVNGKYYKIQIWDANSCERFRSITQAYYRGAHGFMLLYDCTNQESFNNLQFWINEIINKSPNSNNSTIVIIGNKCDL 144          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RAB7_GOSHI (Ras-related protein Rab7 OS=Gossypium hirsutum GN=RAB7 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.379e-23
Identity = 49/122 (40.16%), Postives = 82/122 (67.21%), Query Frame = 1
Query:  295 LFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKEL----RDHTDSNIVIMLVGNKADL 648
            L KV+++GDSGVGK++L++++   +FS + K+TIG +F T+ ++ DD++   QIWDTAGQER++++  A+YRGA   +LV+DV    +F+N+  W +E           N   +++GNK D+
Sbjct:    8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFDDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVHDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKVDV 129          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RAB7L_RAT (Ras-related protein Rab-7L1 OS=Rattus norvegicus GN=Rab7l1 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.379e-23
Identity = 50/125 (40.00%), Postives = 86/125 (68.80%), Query Frame = 1
Query:  289 DYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIR-VDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDH----TDSNIVIMLVGNKADL 648
            D+LFKV+++GD+ VGK++L+ R++++ FS   KST+GV+FA + ++  D ++V+ Q+WD AGQER+ ++T  YYR A   ++++DVT   TF N +RW ++L       +   +  +L+ NK+DL
Sbjct:    5 DHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDSEMVRLQLWDIAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPSGEPVPCLLLANKSDL 129          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RAB7L_PONAB (Ras-related protein Rab-7L1 OS=Pongo abelii GN=RAB7L1 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.379e-23
Identity = 52/129 (40.31%), Postives = 87/129 (67.44%), Query Frame = 1
Query:  289 DYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDD-KVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVI--------MLVGNKADL 648
            D+LFKV+++GD+ VGK++L+ R++++ FS   KST+GV+FA + ++  D ++V+ Q+WD AGQER+ ++T  YYR A   ++++DVT   TF N +RW ++L    DS + +        +L+ NK DL
Sbjct:    5 DHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQLWDIAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDL----DSKLTLPNGEPVPCLLLANKCDL 129          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RAB7L_MOUSE (Ras-related protein Rab-7L1 OS=Mus musculus GN=Rab7l1 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.379e-23
Identity = 50/125 (40.00%), Postives = 86/125 (68.80%), Query Frame = 1
Query:  289 DYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIR-VDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDH----TDSNIVIMLVGNKADL 648
            D+LFKV+++GD+ VGK++L+ R++++ FS   KST+GV+FA + ++  D ++V+ Q+WD AGQER+ ++T  YYR A   ++++DVT   TF N +RW ++L       +   +  +L+ NK+DL
Sbjct:    5 DHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDSEMVRLQLWDIAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPSGEPVPCLLLANKSDL 129          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RAB7L_HUMAN (Ras-related protein Rab-7L1 OS=Homo sapiens GN=RAB7L1 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.379e-23
Identity = 52/129 (40.31%), Postives = 87/129 (67.44%), Query Frame = 1
Query:  289 DYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDD-KVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVI--------MLVGNKADL 648
            D+LFKV+++GD+ VGK++L+ R++++ FS   KST+GV+FA + ++  D ++V+ Q+WD AGQER+ ++T  YYR A   ++++DVT   TF N +RW ++L    DS + +        +L+ NK DL
Sbjct:    5 DHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQLWDIAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDL----DSKLTLPNGEPVPCLLLANKCDL 129          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RAB44_MOUSE (Ras-related protein Rab-44 OS=Mus musculus GN=Rab44 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.379e-23
Identity = 53/128 (41.41%), Postives = 78/128 (60.94%), Query Frame = 1
Query:  283 DYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV 666
            D DYL+ VV +GDS VGK++ L     + F+    +T+GV+F  +++ VD+K    Q+WDTAGQERY ++T    R A G +L+YDVT   +F +V  WL  L+D     + ++L+GNK D    R V
Sbjct:  533 DPDYLYHVVFLGDSNVGKTSFLHLLHHDAFATGLTATVGVDFRVKNLLVDNKTFALQLWDTAGQERYHSLTRQLLRKAEGVVLMYDVTSQESFTHVRYWLDCLQDAGVEGVAMVLLGNKMDCEEERQV 660          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RB33B_MOUSE (Ras-related protein Rab-33B OS=Mus musculus GN=Rab33b PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.225e-22
Identity = 52/121 (42.98%), Postives = 80/121 (66.12%), Query Frame = 1
Query:  295 LFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYR-AITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSN-IVIMLVGNKADLR 651
            +FK+++IGDS VGK+ L  RF    F   +++TIGV+F  R++ +D + +K Q+WDTAGQER+R ++   YYR     + VYD+T   +F ++  W++E + H  +N I  +LVGNK DLR
Sbjct:   33 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 153          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RAB23_HUMAN (Ras-related protein Rab-23 OS=Homo sapiens GN=RAB23 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.564e-22
Identity = 52/124 (41.94%), Postives = 80/124 (64.52%), Query Frame = 1
Query:  277 DDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADL 648
            ++D +   K+V++G+  VGKS+++ R+ K  F+ + K TIGV+F  R I+V+D+ V+  +WDTAGQE + AIT AYYRGA   +LV+  T   +FE V  W +++      +I  +LV NK DL
Sbjct:    3 EEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEV-GDIPTVLVQNKIDL 125          
The following BLAST results are available for this feature:
BLAST of CX295519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB33A_HUMAN9.379e-2342.15Ras-related protein Rab-33A OS=Homo sapiens GN=RAB... [more]
RABT2_DICDI9.379e-2345.31Ras-related protein RabT2 OS=Dictyostelium discoid... [more]
RAB7_GOSHI9.379e-2340.16Ras-related protein Rab7 OS=Gossypium hirsutum GN=... [more]
RAB7L_RAT9.379e-2340.00Ras-related protein Rab-7L1 OS=Rattus norvegicus G... [more]
RAB7L_PONAB9.379e-2340.31Ras-related protein Rab-7L1 OS=Pongo abelii GN=RAB... [more]
RAB7L_MOUSE9.379e-2340.00Ras-related protein Rab-7L1 OS=Mus musculus GN=Rab... [more]
RAB7L_HUMAN9.379e-2340.31Ras-related protein Rab-7L1 OS=Homo sapiens GN=RAB... [more]
RAB44_MOUSE9.379e-2341.41Ras-related protein Rab-44 OS=Mus musculus GN=Rab4... [more]
RB33B_MOUSE1.225e-2242.98Ras-related protein Rab-33B OS=Mus musculus GN=Rab... [more]
RAB23_HUMAN3.564e-2241.94Ras-related protein Rab-23 OS=Homo sapiens GN=RAB2... [more]

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Properties
Property NameValue
Genbank descriptionC05073A10SK DroRLeaf1 Citrus clementina cDNA clone C05073A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295519 ID=CX295519; Name=CX295519; organism=Citrus clementina; type=EST; length=690bp
AGGTGAAAGCCTTGCTCCCGTCCCTCTCTTCCACCACCCTTCCTAAAAGG
CAATGTTAATAACATCACTCAAACAAGAAGAAGAAGAATAGCGAAAGCGT
TAGATTTTCTTGATCTGTTCCCATCATCAACTTCACCTCACCTGTCTTGC
ACACACACTCACACTTATCTCTCTCTCTCTCTCTATTGCGTTAATTGCAT
AATACACAATTCAATAAGAGAGGAGGGGAAAAAAAGAAGAAGAGAGAAAT
TGAAAAAAATGGGAGCATACAGAGCTGACGACGACTACGATTACTTGTTC
AAGGTGGTGTTAATTGGAGATTCAGGAGTTGGGAAATCAAATCTGTTATC
TCGATTCACTAAGAACGAATTCAGCCTCGAATCGAAATCCACCATCGGCG
TCGAATTCGCCACTCGCAGCATTCGCGTCGACGACAAGGTCGTCAAGGCT
CAGATTTGGGACACCGCCGGCCAAGAACGATATCGTGCTATCACAAGTGC
GTACTACCGGGGAGCTGTTGGTGCCTTGCTTGTCTATGATGTCACCCGAC
ATGTTACTTTTGAGAATGTTGAGAGATGGTTGAAAGAGCTTCGGGATCAC
ACAGACTCAAACATTGTGATAATGCTTGTGGGTAACAAGGCTGATTTGCG
TCACTTGCGTGCTGTTTCACTGAGGATGCTCAGTCGTTCG
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