CX295519

Overview
NameCX295519
Unique NameCX295519
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RAB28_BOVIN (Ras-related protein Rab-28 OS=Bos taurus GN=RAB28 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.824e-19
Identity = 50/134 (37.31%), Postives = 79/134 (58.96%), Query Frame = 1
Query:  277 DDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKV-VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERW---LKELRDHTDSNIVIMLVGNKADLRHLRAV 666
            ++  D   K+V++GD   GK++L + F +  F  + K TIG++F  R I +   + V  Q+WD  GQ     +   Y  GA G LLVYDVT + +FEN+E W   +K++ + +++  ++ LVGNK DL H+R V
Sbjct:    6 EESLDRQLKIVVLGDGTSGKTSLATCFAQETFGKQYKQTIGLDFFLRRITLPGSLNVTLQVWDIGGQTIGGKMLDKYIYGAQGVLLVYDVTNYQSFENLEDWYSVVKKVSEESETQPLVALVGNKIDLEHMRTV 139          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RAB28_PONAB (Ras-related protein Rab-28 OS=Pongo abelii GN=RAB28 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.688e-19
Identity = 49/134 (36.57%), Postives = 78/134 (58.21%), Query Frame = 1
Query:  277 DDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKV-VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERW---LKELRDHTDSNIVIMLVGNKADLRHLRAV 666
            ++  D   K+V++GD   GK++L + F +  F    K TIG++F  R I +   + V  QIWD  GQ     +   Y  GA G LLVYD+T + +FEN+E W   +K++ + +++  ++ LVGNK DL H+R +
Sbjct:    6 EESQDRQLKIVVLGDGASGKTSLATCFAQETFGKRYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETRPLVALVGNKIDLEHMRTI 139          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RBL2A_HUMAN (Rab-like protein 2A OS=Homo sapiens GN=RABL2A PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.817e-19
Identity = 48/128 (37.50%), Postives = 73/128 (57.03%), Query Frame = 1
Query:  262 GAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKAD 645
            G Y ADD+     K++ +GDS VGKS L+ RF  + F  +  ST  +     +  VD K +    WDTAGQER++++ ++YY  A   ++V+D+ R VT+ N+  W  ELR+     I  ++V NK D
Sbjct:   14 GKYDADDNV----KIICLGDSAVGKSKLMERFLMDGFQPQQLSTYALTLYKHTATVDGKTILVDFWDTAGQERFQSMHASYYHKAHACIMVFDIQRKVTYRNLSTWYTELREFR-PEIPCIVVANKID 136          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RANL_DROME (GTP-binding nuclear protein Ran-like OS=Drosophila melanogaster GN=ran-like PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.817e-19
Identity = 45/120 (37.50%), Postives = 71/120 (59.17%), Query Frame = 1
Query:  295 LFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH 654
            +FK++LIGD G GK+ L+ R    EF ++  +T+GVE        +  V +  +WDTAGQERY  +   Y+  +  A++++DV    T+ NV+RW ++L      NI I++ GNK D+ H
Sbjct:   10 IFKLILIGDGGTGKTTLVKRHLTGEFKMQYNATLGVEVEQLLFNTNRGVFRIDVWDTAGQERYGGLRDGYFVQSQCAIIMFDVASSNTYNNVKRWHRDL-VRVCGNIPIVICGNKVDIMH 128          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RAN_TETPY (GTP-binding nuclear protein Ran OS=Tetrahymena pyriformis PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.291e-19
Identity = 45/116 (38.79%), Postives = 69/116 (59.48%), Query Frame = 1
Query:  298 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKAD 645
            FK+VL+GD GVGK+  ++R    EF     +T GV  +   +      ++  IWDTAGQE+   +   YY GA  A++++DVT  +T++N+ +W K+L      N+ I+LVGNK D
Sbjct:   12 FKLVLVGDGGVGKTTFVTRHQTGEFEKRYIATQGVNVSNMILHTTKGAIRFNIWDTAGQEKLGGLREGYYIGADAAIMMFDVTSRITYKNIPKWHKDL-TRICENVPIVLVGNKVD 126          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RBL2B_HUMAN (Rab-like protein 2B OS=Homo sapiens GN=RABL2B PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.216e-19
Identity = 48/128 (37.50%), Postives = 73/128 (57.03%), Query Frame = 1
Query:  262 GAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKAD 645
            G Y ADD+     K++ +GDS VGKS L+ RF  + F  +  ST  +     +  VD + +    WDTAGQER++++ ++YY  A   ++V+DV R VT+ N+  W  ELR+     I  ++V NK D
Sbjct:   14 GKYDADDNV----KIICLGDSAVGKSKLMERFLMDGFQPQQLSTYALTLYKHTATVDGRTILVDFWDTAGQERFQSMHASYYHKAHACIMVFDVQRKVTYRNLSTWYTELREFR-PEIPCIVVANKID 136          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RAN_TETTH (GTP-binding nuclear protein Ran OS=Tetrahymena thermophila PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.216e-19
Identity = 49/129 (37.98%), Postives = 75/129 (58.14%), Query Frame = 1
Query:  298 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSLRMLS 684
            FK+VL+GD GVGK+  ++R    EF     +T GV  +   +      ++  IWDTAGQE+   +   YY GA  A++++DVT  +T++N+ +W K+L      NI I+LVGNK D +  R V  R ++
Sbjct:   12 FKLVLVGDGGVGKTTFVTRHQTGEFEKRYIATQGVNVSNMVLYTTKGPIRFNIWDTAGQEKLGGLREGYYIGANAAIMMFDVTSRITYKNIPKWHKDL-TRICENIPIVLVGNKVDSKD-RKVKARQIT 138          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RAB28_RAT (Ras-related protein Rab-28 OS=Rattus norvegicus GN=Rab28 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.216e-19
Identity = 49/134 (36.57%), Postives = 78/134 (58.21%), Query Frame = 1
Query:  277 DDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKV-VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERW---LKELRDHTDSNIVIMLVGNKADLRHLRAV 666
            ++  D   K+V++GD   GK++L + F +  F  + K TIG++F  R I +   + V  Q+WD  GQ     +   Y  GA G LLVYD+T + +FEN+E W   +K + + +++  ++ LVGNK DL H+R V
Sbjct:    6 EESQDRQLKIVVLGDGTSGKTSLATCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQVWDIGGQTIGGKMLDKYIYGAQGILLVYDITNYQSFENLEDWYSVVKTVSEESETQPLVALVGNKIDLEHMRTV 139          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RAB28_MOUSE (Ras-related protein Rab-28 OS=Mus musculus GN=Rab28 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.216e-19
Identity = 49/134 (36.57%), Postives = 78/134 (58.21%), Query Frame = 1
Query:  277 DDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKV-VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERW---LKELRDHTDSNIVIMLVGNKADLRHLRAV 666
            ++  D   K+V++GD   GK++L + F +  F  + K TIG++F  R I +   + V  Q+WD  GQ     +   Y  GA G LLVYD+T + +FEN+E W   +K + + +++  ++ LVGNK DL H+R V
Sbjct:    6 EESQDRQLKIVVLGDGTSGKTSLATCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQVWDIGGQTIGGKMLDKYIYGAQGILLVYDITNYQSFENLEDWYSVVKTVSEESETQPLVALVGNKIDLEHMRTV 139          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RAB24_HUMAN (Ras-related protein Rab-24 OS=Homo sapiens GN=RAB24 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.073e-18
Identity = 49/117 (41.88%), Postives = 72/117 (61.54%), Query Frame = 1
Query:  301 KVVLIGDSGVGKSNLLSRFTKNEFSLES-KSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADL 648
            KVV++G   VGK++L+ R+  + F +   ++TIG  F  + + V D+ V   IWDTAG ERY A++  YYRGA  A++ YD+T   +FE  + W+KELR   +    I L G K+DL
Sbjct:    9 KVVMLGKEYVGKTSLVERYVHDRFLVGPYQNTIGAAFVAKVMSVGDRTVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELRS-LEEGCQIYLCGTKSDL 124          
The following BLAST results are available for this feature:
BLAST of CX295519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB28_BOVIN2.824e-1937.31Ras-related protein Rab-28 OS=Bos taurus GN=RAB28 ... [more]
RAB28_PONAB3.688e-1936.57Ras-related protein Rab-28 OS=Pongo abelii GN=RAB2... [more]
RBL2A_HUMAN4.817e-1937.50Rab-like protein 2A OS=Homo sapiens GN=RABL2A PE=2... [more]
RANL_DROME4.817e-1937.50GTP-binding nuclear protein Ran-like OS=Drosophila... [more]
RAN_TETPY6.291e-1938.79GTP-binding nuclear protein Ran OS=Tetrahymena pyr... [more]
RBL2B_HUMAN8.216e-1937.50Rab-like protein 2B OS=Homo sapiens GN=RABL2B PE=2... [more]
RAN_TETTH8.216e-1937.98GTP-binding nuclear protein Ran OS=Tetrahymena the... [more]
RAB28_RAT8.216e-1936.57Ras-related protein Rab-28 OS=Rattus norvegicus GN... [more]
RAB28_MOUSE8.216e-1936.57Ras-related protein Rab-28 OS=Mus musculus GN=Rab2... [more]
RAB24_HUMAN1.073e-1841.88Ras-related protein Rab-24 OS=Homo sapiens GN=RAB2... [more]

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Properties
Property NameValue
Genbank descriptionC05073A10SK DroRLeaf1 Citrus clementina cDNA clone C05073A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295519 ID=CX295519; Name=CX295519; organism=Citrus clementina; type=EST; length=690bp
AGGTGAAAGCCTTGCTCCCGTCCCTCTCTTCCACCACCCTTCCTAAAAGG
CAATGTTAATAACATCACTCAAACAAGAAGAAGAAGAATAGCGAAAGCGT
TAGATTTTCTTGATCTGTTCCCATCATCAACTTCACCTCACCTGTCTTGC
ACACACACTCACACTTATCTCTCTCTCTCTCTCTATTGCGTTAATTGCAT
AATACACAATTCAATAAGAGAGGAGGGGAAAAAAAGAAGAAGAGAGAAAT
TGAAAAAAATGGGAGCATACAGAGCTGACGACGACTACGATTACTTGTTC
AAGGTGGTGTTAATTGGAGATTCAGGAGTTGGGAAATCAAATCTGTTATC
TCGATTCACTAAGAACGAATTCAGCCTCGAATCGAAATCCACCATCGGCG
TCGAATTCGCCACTCGCAGCATTCGCGTCGACGACAAGGTCGTCAAGGCT
CAGATTTGGGACACCGCCGGCCAAGAACGATATCGTGCTATCACAAGTGC
GTACTACCGGGGAGCTGTTGGTGCCTTGCTTGTCTATGATGTCACCCGAC
ATGTTACTTTTGAGAATGTTGAGAGATGGTTGAAAGAGCTTCGGGATCAC
ACAGACTCAAACATTGTGATAATGCTTGTGGGTAACAAGGCTGATTTGCG
TCACTTGCGTGCTGTTTCACTGAGGATGCTCAGTCGTTCG
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