CX295519

Overview
NameCX295519
Unique NameCX295519
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RB11C_TOBAC (Ras-related protein Rab11C OS=Nicotiana tabacum GN=RAB11C PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.201e-47
Identity = 90/131 (68.70%), Postives = 108/131 (82.44%), Query Frame = 1
Query:  274 ADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV 666
            A    DY+FKVVLIGDS VGK+ +L+RF +NEFSL+SK+TIGVEF TR++ +  K VKAQIWDTAGQERYRA+TSAYYRGAVGA+LVYD+T+  TF+++ RWL+ELR H D NIVIML GNK DL   RAV
Sbjct:    8 ASQKIDYVFKVVLIGDSAVGKTQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLTGNKTDLEDQRAV 138          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: ARA1_ARATH (Ras-related protein ARA-1 OS=Arabidopsis thaliana GN=ARA-1 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.131e-47
Identity = 88/128 (68.75%), Postives = 110/128 (85.94%), Query Frame = 1
Query:  289 DYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSL 672
            +YLFK+V+IGDS VGKSNLLSR+ +NEFS  SK+TIGVEF T+S+ ++ K VKAQIWDTAGQER+RA+TSAYYRGAVGAL+VYD+TR  TFE+V RWL EL+ H+D+ +  MLVGNK DL ++RAVS+
Sbjct:   10 EYLFKIVVIGDSAVGKSNLLSRYARNEFSANSKATIGVEFQTQSMEIEGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRTTFESVGRWLDELKIHSDTTVARMLVGNKCDLENIRAVSV 137          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: ARA4_ARATH (Ras-related protein ARA-4 OS=Arabidopsis thaliana GN=ARA-4 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.589e-46
Identity = 90/136 (66.18%), Postives = 112/136 (82.35%), Query Frame = 1
Query:  274 ADDDY---DYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSL 672
            +DDD    +YLFK+V+IGDS VGKSNLL+R+ +NEF+  SK+TIGVEF T+S+ +D K VKAQIWDTAGQER+RA+TSAYYRGAVGAL+VYD+TR  TFENV RWL EL  H+D+ +  ML+GNK DL  +RAVS+
Sbjct:    2 SDDDERGEEYLFKIVIIGDSAVGKSNLLTRYARNEFNPNSKATIGVEFQTQSMLIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRSSTFENVGRWLDELNTHSDTTVAKMLIGNKCDLESIRAVSV 137          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RB11C_DICDI (Ras-related protein Rab-11C OS=Dictyostelium discoideum GN=rab11C PE=1 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.650e-44
Identity = 79/130 (60.77%), Postives = 110/130 (84.62%), Query Frame = 1
Query:  277 DDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV 666
            +++ +YLFK+V+IGDS VGKSNLL+RFT+NEF+ ++K+TIGV+F T+SI +D+K + AQ WDTAGQER+RA+TS YYRGAVGA++VYD+T  ++F+NV RWL ELR+  + +I+IM+VGNK+DL   R V
Sbjct:    4 EEEAEYLFKIVIIGDSAVGKSNLLNRFTRNEFTEKTKATIGVDFGTKSIEIDNKTITAQCWDTAGQERFRAVTSGYYRGAVGAMIVYDITSKISFKNVTRWLNELREMAEQDILIMMVGNKSDLEMSREV 133          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RB11B_DICDI (Ras-related protein Rab-11B OS=Dictyostelium discoideum GN=rab11B PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.178e-41
Identity = 75/129 (58.14%), Postives = 107/129 (82.95%), Query Frame = 1
Query:  283 DYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVS 669
            +YDYL K+V+IGDSGVGKSNLLSR+ KNEFS+   STIGVEF+T+++++D+K++K Q+WDTAGQE+Y +IT +YY+GA+GAL+VY++    +F N+E+WLK+ R++   +  IMLVGNK+DL+  R VS
Sbjct:    7 EYDYLCKIVVIGDSGVGKSNLLSRYNKNEFSVGKLSTIGVEFSTKTLKIDNKLIKLQLWDTAGQEKYNSITESYYKGAIGALIVYNIADRNSFNNLEKWLKKFRENAHQDYGIMLVGNKSDLKEYREVS 135          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RAB2A_MAIZE (Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.080e-38
Identity = 76/128 (59.38%), Postives = 94/128 (73.44%), Query Frame = 1
Query:  286 YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVS 669
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R I +D+K +K QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL++ R H ++N+ IMLVGNK DL H RAVS
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNKCDLSHRRAVS 130          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RAB2B_MAIZE (Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.716e-38
Identity = 76/128 (59.38%), Postives = 94/128 (73.44%), Query Frame = 1
Query:  286 YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVS 669
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R I +D+K +K QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL++ R H ++N+ IMLVGNK DL H RAVS
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNKCDLSHRRAVS 130          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RAB14_DICDI (Ras-related protein Rab-14 OS=Dictyostelium discoideum GN=rab14 PE=1 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 3.547e-38
Identity = 74/128 (57.81%), Postives = 99/128 (77.34%), Query Frame = 1
Query:  286 YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVS 669
            Y+Y+FK ++IGD GVGKS LL +FT+N+F  +S  TIGVEF TR + V++K +K QIWDTAGQER+RA+T +YYRGA GALLVYD+TR +T+ ++  WL + R+ T+ N VIML+GNK DL   R V+
Sbjct:    5 YEYIFKYIIIGDMGVGKSCLLHQFTENKFVPDSPHTIGVEFGTRIVDVNNKKIKLQIWDTAGQERFRAVTRSYYRGAAGALLVYDITRRITYNHLTTWLTDARNLTNPNTVIMLIGNKKDLEGQRDVT 132          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: YPTV4_VOLCA (GTP-binding protein yptV4 OS=Volvox carteri GN=YPTV4 PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.761e-37
Identity = 74/128 (57.81%), Postives = 92/128 (71.88%), Query Frame = 1
Query:  286 YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVS 669
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R I +D K +K QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL++ R H + N+ IML+GNK DL H RAV+
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVT 130          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: YPTC4_CHLRE (GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii GN=YPTC4 PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.761e-37
Identity = 74/128 (57.81%), Postives = 92/128 (71.88%), Query Frame = 1
Query:  286 YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVS 669
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R I +D K +K QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL++ R H + N+ IML+GNK DL H RAV+
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVT 130          
The following BLAST results are available for this feature:
BLAST of CX295519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11C_TOBAC3.201e-4768.70Ras-related protein Rab11C OS=Nicotiana tabacum GN... [more]
ARA1_ARATH7.131e-4768.75Ras-related protein ARA-1 OS=Arabidopsis thaliana ... [more]
ARA4_ARATH1.589e-4666.18Ras-related protein ARA-4 OS=Arabidopsis thaliana ... [more]
RB11C_DICDI5.650e-4460.77Ras-related protein Rab-11C OS=Dictyostelium disco... [more]
RB11B_DICDI1.178e-4158.14Ras-related protein Rab-11B OS=Dictyostelium disco... [more]
RAB2A_MAIZE2.080e-3859.38Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A P... [more]
RAB2B_MAIZE2.716e-3859.38Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B P... [more]
RAB14_DICDI3.547e-3857.81Ras-related protein Rab-14 OS=Dictyostelium discoi... [more]
YPTV4_VOLCA1.761e-3757.81GTP-binding protein yptV4 OS=Volvox carteri GN=YPT... [more]
YPTC4_CHLRE1.761e-3757.81GTP-binding protein YPTC4 OS=Chlamydomonas reinhar... [more]

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Properties
Property NameValue
Genbank descriptionC05073A10SK DroRLeaf1 Citrus clementina cDNA clone C05073A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295519 ID=CX295519; Name=CX295519; organism=Citrus clementina; type=EST; length=690bp
AGGTGAAAGCCTTGCTCCCGTCCCTCTCTTCCACCACCCTTCCTAAAAGG
CAATGTTAATAACATCACTCAAACAAGAAGAAGAAGAATAGCGAAAGCGT
TAGATTTTCTTGATCTGTTCCCATCATCAACTTCACCTCACCTGTCTTGC
ACACACACTCACACTTATCTCTCTCTCTCTCTCTATTGCGTTAATTGCAT
AATACACAATTCAATAAGAGAGGAGGGGAAAAAAAGAAGAAGAGAGAAAT
TGAAAAAAATGGGAGCATACAGAGCTGACGACGACTACGATTACTTGTTC
AAGGTGGTGTTAATTGGAGATTCAGGAGTTGGGAAATCAAATCTGTTATC
TCGATTCACTAAGAACGAATTCAGCCTCGAATCGAAATCCACCATCGGCG
TCGAATTCGCCACTCGCAGCATTCGCGTCGACGACAAGGTCGTCAAGGCT
CAGATTTGGGACACCGCCGGCCAAGAACGATATCGTGCTATCACAAGTGC
GTACTACCGGGGAGCTGTTGGTGCCTTGCTTGTCTATGATGTCACCCGAC
ATGTTACTTTTGAGAATGTTGAGAGATGGTTGAAAGAGCTTCGGGATCAC
ACAGACTCAAACATTGTGATAATGCTTGTGGGTAACAAGGCTGATTTGCG
TCACTTGCGTGCTGTTTCACTGAGGATGCTCAGTCGTTCG
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