CX295519

Overview
NameCX295519
Unique NameCX295519
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RAN_DROME (GTP-binding nuclear protein Ran OS=Drosophila melanogaster GN=ran PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.888e-17
Identity = 43/118 (36.44%), Postives = 67/118 (56.78%), Query Frame = 1
Query:  298 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR 651
            FK VL+GD G GK+  + R    EF  +  +T+GVE        +   ++  +WDTAGQE++  +   YY     A++++DVT  VT++NV  W ++L      NI I+L GNK D++
Sbjct:   11 FKCVLVGDGGTGKTTFVKRHMTGEFEKKYVATLGVEVHPLIFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAVIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIK 127          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RAB7B_HUMAN (Ras-related protein Rab-7b OS=Homo sapiens GN=RAB7B PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.888e-17
Identity = 42/119 (35.29%), Postives = 75/119 (63.03%), Query Frame = 1
Query:  301 KVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDH---TDSNIVIMLVGNKADL 648
            K++++G  GVGK++LL ++    F  E ++T+G    ++ I + D  +K QIWDT GQER+R++ S +Y+G+ G +L +DVT   +FE ++ W  ++       + +  ++L+GNK DL
Sbjct:   10 KLIIVGAIGVGKTSLLHQYVHKTFYEEYQTTLGASILSKIIILGDTTLKLQIWDTGGQERFRSMVSTFYKGSDGCILAFDVTDLESFEALDIWRGDVLAKIVPMEQSYPMVLLGNKIDL 128          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: GSP1_YARLI (GTP-binding nuclear protein GSP1/Ran OS=Yarrowia lipolytica GN=GSP1 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.888e-17
Identity = 42/118 (35.59%), Postives = 67/118 (56.78%), Query Frame = 1
Query:  298 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR 651
            FK+VL+GD G GK+  + R    EF     +T+GVE    +   D   ++  +WDTAGQE++  +   YY      ++++DVT  +T++NV  W ++L      NI I+L GNK D++
Sbjct:    8 FKLVLVGDGGTGKTTFVKRHETGEFVNRYNATLGVEVHPLNFATDCGNIRFDVWDTAGQEKFGGLRDGYYINGQCGIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDVK 124          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: GSP1_NEUCR (GTP-binding nuclear protein GSP1/Ran OS=Neurospora crassa GN=gsp-1 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.690e-17
Identity = 41/118 (34.75%), Postives = 67/118 (56.78%), Query Frame = 1
Query:  298 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR 651
            FK+VL+GD G GK+  + R    EF  +  +T+GVE        +   ++  +WDTAGQE++  +   YY      ++++DVT  +T++NV  W ++L      NI I+L GNK D++
Sbjct:    8 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYMATLGVEVHPLGFSTNFGQIQFDVWDTAGQEKFGGLRDGYYINGQCGIIMFDVTSRITYKNVPNWHRDL-TRVCENIPIVLCGNKVDVK 124          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RB32C_DICDI (Ras-related protein Rab-32C OS=Dictyostelium discoideum GN=rab32C PE=3 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.004e-16
Identity = 43/126 (34.13%), Postives = 75/126 (59.52%), Query Frame = 1
Query:  277 DDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDH--TDSNIVIMLVGNKADL 648
            +DD     K++++G    GK++++ R+  N F  + K TIGV+F  + + +  + V  Q+WD AGQER+  +T  Y++ A GA++V+D TR  TF   + W  ++ D+   + N+  +L+ NK DL
Sbjct:   22 NDDEAISLKILVVGKLACGKTSIIQRYCHNNFQPKYKPTIGVDFQQKVLEIMGQKVLLQLWDIAGQERFGHMTRVYFQNAHGAVIVFDATRSGTFLGAKAWKDDI-DYCFNNENLPTILLANKCDL 146          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RAB7B_DICDI (Ras-related protein Rab-7B OS=Dictyostelium discoideum GN=rab7B PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.004e-16
Identity = 46/121 (38.02%), Postives = 75/121 (61.98%), Query Frame = 1
Query:  295 LFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM----LVGNKAD 645
            + KVV+IG+  VGK+++L R+    F +  K TIGV+F    + V + +V  Q+WDT+GQER+R++  +YYRGA   +LV+DVT   T  +++ W  +  + T+    I+    ++GNK D
Sbjct:    7 IIKVVIIGEKSVGKTSILRRYVDKRF-VTLKPTIGVDF----VMVSENMVTLQLWDTSGQERFRSLEISYYRGADYCILVFDVTNEKTLYDLKLWRDDFIEKTEIRDPILFPFIILGNKID 122          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: GSP1_CANAL (GTP-binding nuclear protein GSP1/Ran OS=Candida albicans GN=GSP1 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.004e-16
Identity = 42/118 (35.59%), Postives = 67/118 (56.78%), Query Frame = 1
Query:  298 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR 651
            FK+VL+GD G GK+  + R    EF  +  +T+GVE        +   +K  +WDTAGQE++  +   YY      ++++DVT  +T++NV  W ++L      NI I+L GNK D++
Sbjct:    8 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVNPLGFHTNFGELKFDVWDTAGQEKFGGLRDGYYINGQCGIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDVK 124          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RAN2_ORYSJ (GTP-binding nuclear protein Ran-2 OS=Oryza sativa subsp. japonica GN=RAN2 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.817e-16
Identity = 42/119 (35.29%), Postives = 68/119 (57.14%), Query Frame = 1
Query:  298 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH 654
            FK+V++GD G GK+  + R    EF  + + TIGVE        +   ++   WDTAGQE++  +   YY     A++++DVT  +T++NV  W ++L      NI I+L GNK D+++
Sbjct:   14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFTTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTSRLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN 131          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RAN2_ORYSI (GTP-binding nuclear protein Ran-2 OS=Oryza sativa subsp. indica GN=RAN2 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.817e-16
Identity = 42/119 (35.29%), Postives = 68/119 (57.14%), Query Frame = 1
Query:  298 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH 654
            FK+V++GD G GK+  + R    EF  + + TIGVE        +   ++   WDTAGQE++  +   YY     A++++DVT  +T++NV  W ++L      NI I+L GNK D+++
Sbjct:   14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFTTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTSRLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN 131          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RABH_DICDI (Ras-related protein RabH OS=Dictyostelium discoideum GN=rabH PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.817e-16
Identity = 40/118 (33.90%), Postives = 72/118 (61.02%), Query Frame = 1
Query:  301 KVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH 654
            K+ +IGD  VGKS+LL RF  + F  ++K ++G  F  +++ +  + +  QI DT+G E++R++ +++Y    G L+VYD++   TFEN + WL E       + + ++V +K DL +
Sbjct:    9 KLTIIGDWNVGKSSLLYRFFNDVFYEQTKLSMGEHFFYKTVLIRGESIDLQITDTSGMEKFRSLNNSFYSNLDGILIVYDISDQETFENTKLWLNEANKLAPKDCIKIIVASKFDLEN 126          
The following BLAST results are available for this feature:
BLAST of CX295519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAN_DROME5.888e-1736.44GTP-binding nuclear protein Ran OS=Drosophila mela... [more]
RAB7B_HUMAN5.888e-1735.29Ras-related protein Rab-7b OS=Homo sapiens GN=RAB7... [more]
GSP1_YARLI5.888e-1735.59GTP-binding nuclear protein GSP1/Ran OS=Yarrowia l... [more]
GSP1_NEUCR7.690e-1734.75GTP-binding nuclear protein GSP1/Ran OS=Neurospora... [more]
RB32C_DICDI1.004e-1634.13Ras-related protein Rab-32C OS=Dictyostelium disco... [more]
RAB7B_DICDI1.004e-1638.02Ras-related protein Rab-7B OS=Dictyostelium discoi... [more]
GSP1_CANAL1.004e-1635.59GTP-binding nuclear protein GSP1/Ran OS=Candida al... [more]
RAN2_ORYSJ3.817e-1635.29GTP-binding nuclear protein Ran-2 OS=Oryza sativa ... [more]
RAN2_ORYSI3.817e-1635.29GTP-binding nuclear protein Ran-2 OS=Oryza sativa ... [more]
RABH_DICDI3.817e-1633.90Ras-related protein RabH OS=Dictyostelium discoide... [more]

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Properties
Property NameValue
Genbank descriptionC05073A10SK DroRLeaf1 Citrus clementina cDNA clone C05073A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295519 ID=CX295519; Name=CX295519; organism=Citrus clementina; type=EST; length=690bp
AGGTGAAAGCCTTGCTCCCGTCCCTCTCTTCCACCACCCTTCCTAAAAGG
CAATGTTAATAACATCACTCAAACAAGAAGAAGAAGAATAGCGAAAGCGT
TAGATTTTCTTGATCTGTTCCCATCATCAACTTCACCTCACCTGTCTTGC
ACACACACTCACACTTATCTCTCTCTCTCTCTCTATTGCGTTAATTGCAT
AATACACAATTCAATAAGAGAGGAGGGGAAAAAAAGAAGAAGAGAGAAAT
TGAAAAAAATGGGAGCATACAGAGCTGACGACGACTACGATTACTTGTTC
AAGGTGGTGTTAATTGGAGATTCAGGAGTTGGGAAATCAAATCTGTTATC
TCGATTCACTAAGAACGAATTCAGCCTCGAATCGAAATCCACCATCGGCG
TCGAATTCGCCACTCGCAGCATTCGCGTCGACGACAAGGTCGTCAAGGCT
CAGATTTGGGACACCGCCGGCCAAGAACGATATCGTGCTATCACAAGTGC
GTACTACCGGGGAGCTGTTGGTGCCTTGCTTGTCTATGATGTCACCCGAC
ATGTTACTTTTGAGAATGTTGAGAGATGGTTGAAAGAGCTTCGGGATCAC
ACAGACTCAAACATTGTGATAATGCTTGTGGGTAACAAGGCTGATTTGCG
TCACTTGCGTGCTGTTTCACTGAGGATGCTCAGTCGTTCG
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