CX295519

Overview
NameCX295519
Unique NameCX295519
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RAC6_ORYSJ (Rac-like GTP-binding protein 6 OS=Oryza sativa subsp. japonica GN=RAC6 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.665e-14
Identity = 45/118 (38.14%), Postives = 65/118 (55.08%), Query Frame = 1
Query:  301 KVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR 651
            K V +GD  VGK+ +L  +T N F  +   T+   F+   + VD   V   +WDTAGQE Y  +    YRGA   LL + +    ++ENV ++W+ EL+ H    + I+LVG K DLR
Sbjct:    8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIPELK-HYAPGVPIILVGTKLDLR 123          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RAC4_ARATH (Rac-like GTP-binding protein ARAC4 OS=Arabidopsis thaliana GN=ARAC4 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.665e-14
Identity = 44/118 (37.29%), Postives = 65/118 (55.08%), Query Frame = 1
Query:  301 KVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR 651
            K V +GD  VGK+ +L  +T N F  +   T+   F+   + VD   V   +WDTAGQE Y  +    YRGA   +L + +    ++EN+ ++W+ ELR H    + I+LVG K DLR
Sbjct:    7 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENIAKKWIPELR-HYAPGVPIILVGTKLDLR 122          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: DJC27_CHICK (DnaJ homolog subfamily C member 27 OS=Gallus gallus GN=DNAJC27 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.665e-14
Identity = 38/127 (29.92%), Postives = 72/127 (56.69%), Query Frame = 1
Query:  301 KVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD-----SNIVIMLVGNKADLRHLRAV 666
            KV+ +G++ VGKS ++ R+ +  F  +  +TIG+++    ++V D+ +K  I+D AG   +  + + +Y+   G +LVYDV +  +F+ ++ WL E++          NIV ++  NK D    R+V
Sbjct:   18 KVISMGNAEVGKSCIIKRYCEKRFVPKYLATIGIDYGVTKVQVRDREIKVNIFDMAGHPFFYEVRNEFYKDTQGVILVYDVGQKESFDALDAWLAEMKQELGPHGNMDNIVFVVCANKIDCTKHRSV 144          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RHOD_MOUSE (Rho-related GTP-binding protein RhoD OS=Mus musculus GN=Rhod PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.093e-14
Identity = 49/118 (41.53%), Postives = 67/118 (56.78%), Query Frame = 1
Query:  301 KVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR 651
            KVVL+GD G GK++L+  F K  F  ES S    E    ++++  K V  QIWDTAGQ+ Y  +   +Y  A   LL +DVT   +F+NV  RW  E+  H    + I++VG K DLR
Sbjct:   19 KVVLVGDGGCGKTSLMMVFAKGAFP-ESYSPTVFERYNATLQMKGKPVHLQIWDTAGQDDYDRLRPLFYPDANVLLLCFDVTNPNSFDNVSNRWYPEV-THFCKGVPIIVVGCKIDLR 134          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RAC4_ORYSJ (Rac-like GTP-binding protein 4 OS=Oryza sativa subsp. japonica GN=RAC4 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.093e-14
Identity = 45/118 (38.14%), Postives = 66/118 (55.93%), Query Frame = 1
Query:  301 KVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR 651
            K V +GD  VGK+ +L  +T N+F  +   T+   F+   + VD   V   +WDTAGQE Y  +    YRGA   +L + +    ++ENV ++WL EL+ H    + I+LVG K DLR
Sbjct:   10 KCVTVGDGAVGKTCMLICYTSNKFPTDYVPTVFDNFSANVV-VDGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVMKKWLPELQ-HYAPGVPIVLVGTKLDLR 125          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RAC1_ORYSJ (Rac-like GTP-binding protein 1 OS=Oryza sativa subsp. japonica GN=RAC1 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.093e-14
Identity = 46/122 (37.70%), Postives = 69/122 (56.56%), Query Frame = 1
Query:  301 KVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLRHLRA 663
            K V +GD  VGK+ +L  +T N+F  +   T+   F+  ++ VD  VV   +WDTAGQE Y  +    YRGA   +L + +    ++ENV+ +W+ ELR      + ++LVG K DLR  RA
Sbjct:   12 KCVTVGDGAVGKTCMLICYTCNKFPTDYIPTVFDNFSA-NVSVDGSVVNLGLWDTAGQEDYSRLRPLSYRGADVFILSFSLISRASYENVQKKWMPELRRFA-PGVPVVLVGTKLDLREDRA 131          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RABP_DICDI (Ras-related protein RabP OS=Dictyostelium discoideum GN=rabP PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.093e-14
Identity = 42/124 (33.87%), Postives = 72/124 (58.06%), Query Frame = 1
Query:  301 KVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKEL--RDHTDSNIVIMLVGNKADLRHLRAV 666
            K++ +G+ GVGKS++L RF  ++  L+  +T    F T+   +D+  V  Q WDT+GQER+ +++S++YR   G +L + V    +F+ ++ W  EL    +    +  +LVGNK DL   + V
Sbjct:   10 KIITVGNYGVGKSSILKRF--HQVDLDDNTT---GFKTKKFIIDNHHVSVQTWDTSGQERFCSLSSSFYRNCDGVILCFSVDNEDSFKALDLWRDELIKFGYFPDRVPFILVGNKFDLEFKKHV 128          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RABM_DICDI (Ras-related protein RabM OS=Dictyostelium discoideum GN=rabM PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 7.958e-14
Identity = 31/116 (26.72%), Postives = 69/116 (59.48%), Query Frame = 1
Query:  301 KVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADL 648
            K++ +GDS VGK+++ + F   ++ + ++ T+   F ++++ ++++ V   +WDT  QER+  ++  YYR +    L +D+    +F+N+++W+ E R      +  +L+G K D+
Sbjct:    7 KIITLGDSYVGKTSVFNNFVTGKYEI-NECTVSPSFYSKTLTIENEPVILNVWDTCSQERFNGLSPIYYRWSNCYTLCFDIHNEKSFKNLDKWMDEARKFCIGKVPFVLIGTKKDI 121          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: YPT11_YEAST (GTP-binding protein YPT11 OS=Saccharomyces cerevisiae GN=YPT11 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.039e-13
Identity = 42/124 (33.87%), Postives = 70/124 (56.45%), Query Frame = 1
Query:  316 GDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYR-AITSAYYRGAVGALLVYDVTRHVTFEN-VERWLKELRDHTDSNIVI----MLVGNKADLRHLRAVS 669
            G+  +G  N       NE  +E++STIG++  T  + +D++     +WDTAGQERY+ AI  + Y+     +L YD+T   +F++ +ERW+ +  ++  S  ++     LVGNK DL   R V+
Sbjct:  180 GNPNIGDDNNHEMADPNEIVIETRSTIGIDIKTNLVNIDNRFFNVILWDTAGQERYQNAIIPSLYKKTNAVILTYDITNAKSFQSCMERWIVQALENFSSQDLLKARFFLVGNKIDLYKERQVT 303          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: YPT11_YEAS7 (GTP-binding protein YPT11 OS=Saccharomyces cerevisiae (strain YJM789) GN=YPT11 PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.039e-13
Identity = 42/124 (33.87%), Postives = 70/124 (56.45%), Query Frame = 1
Query:  316 GDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYR-AITSAYYRGAVGALLVYDVTRHVTFEN-VERWLKELRDHTDSNIVI----MLVGNKADLRHLRAVS 669
            G+  +G  N       NE  +E++STIG++  T  + +D++     +WDTAGQERY+ AI  + Y+     +L YD+T   +F++ +ERW+ +  ++  S  ++     LVGNK DL   R V+
Sbjct:  180 GNPNIGDDNNHEMADPNEIVIETRSTIGIDIKTNLVNIDNRFFNVILWDTAGQERYQNAIIPSLYKKTNAVILTYDITNAKSFQSCMERWIVQALENFSSQDLLKARFFLVGNKIDLYKERQVT 303          
The following BLAST results are available for this feature:
BLAST of CX295519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAC6_ORYSJ4.665e-1438.14Rac-like GTP-binding protein 6 OS=Oryza sativa sub... [more]
RAC4_ARATH4.665e-1437.29Rac-like GTP-binding protein ARAC4 OS=Arabidopsis ... [more]
DJC27_CHICK4.665e-1429.92DnaJ homolog subfamily C member 27 OS=Gallus gallu... [more]
RHOD_MOUSE6.093e-1441.53Rho-related GTP-binding protein RhoD OS=Mus muscul... [more]
RAC4_ORYSJ6.093e-1438.14Rac-like GTP-binding protein 4 OS=Oryza sativa sub... [more]
RAC1_ORYSJ6.093e-1437.70Rac-like GTP-binding protein 1 OS=Oryza sativa sub... [more]
RABP_DICDI6.093e-1433.87Ras-related protein RabP OS=Dictyostelium discoide... [more]
RABM_DICDI7.958e-1426.72Ras-related protein RabM OS=Dictyostelium discoide... [more]
YPT11_YEAST1.039e-1333.87GTP-binding protein YPT11 OS=Saccharomyces cerevis... [more]
YPT11_YEAS71.039e-1333.87GTP-binding protein YPT11 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionC05073A10SK DroRLeaf1 Citrus clementina cDNA clone C05073A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295519 ID=CX295519; Name=CX295519; organism=Citrus clementina; type=EST; length=690bp
AGGTGAAAGCCTTGCTCCCGTCCCTCTCTTCCACCACCCTTCCTAAAAGG
CAATGTTAATAACATCACTCAAACAAGAAGAAGAAGAATAGCGAAAGCGT
TAGATTTTCTTGATCTGTTCCCATCATCAACTTCACCTCACCTGTCTTGC
ACACACACTCACACTTATCTCTCTCTCTCTCTCTATTGCGTTAATTGCAT
AATACACAATTCAATAAGAGAGGAGGGGAAAAAAAGAAGAAGAGAGAAAT
TGAAAAAAATGGGAGCATACAGAGCTGACGACGACTACGATTACTTGTTC
AAGGTGGTGTTAATTGGAGATTCAGGAGTTGGGAAATCAAATCTGTTATC
TCGATTCACTAAGAACGAATTCAGCCTCGAATCGAAATCCACCATCGGCG
TCGAATTCGCCACTCGCAGCATTCGCGTCGACGACAAGGTCGTCAAGGCT
CAGATTTGGGACACCGCCGGCCAAGAACGATATCGTGCTATCACAAGTGC
GTACTACCGGGGAGCTGTTGGTGCCTTGCTTGTCTATGATGTCACCCGAC
ATGTTACTTTTGAGAATGTTGAGAGATGGTTGAAAGAGCTTCGGGATCAC
ACAGACTCAAACATTGTGATAATGCTTGTGGGTAACAAGGCTGATTTGCG
TCACTTGCGTGCTGTTTCACTGAGGATGCTCAGTCGTTCG
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