CX295519

Overview
NameCX295519
Unique NameCX295519
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: YPT11_YEAS6 (GTP-binding protein YPT11 OS=Saccharomyces cerevisiae (strain AWRI1631) GN=YPT11 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.039e-13
Identity = 42/124 (33.87%), Postives = 70/124 (56.45%), Query Frame = 1
Query:  316 GDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYR-AITSAYYRGAVGALLVYDVTRHVTFEN-VERWLKELRDHTDSNIVI----MLVGNKADLRHLRAVS 669
            G+  +G  N       NE  +E++STIG++  T  + +D++     +WDTAGQERY+ AI  + Y+     +L YD+T   +F++ +ERW+ +  ++  S  ++     LVGNK DL   R V+
Sbjct:  180 GNPNIGDDNNHEMADPNEIVIETRSTIGIDIKTNLVNIDNRFFNVILWDTAGQERYQNAIIPSLYKKTNAVILTYDITNAKSFQSCMERWIVQALENFSSQDLLKARFFLVGNKIDLYKERQVT 303          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: YPT11_YEAS1 (GTP-binding protein YPT11 OS=Saccharomyces cerevisiae (strain RM11-1a) GN=YPT11 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.039e-13
Identity = 42/124 (33.87%), Postives = 70/124 (56.45%), Query Frame = 1
Query:  316 GDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYR-AITSAYYRGAVGALLVYDVTRHVTFEN-VERWLKELRDHTDSNIVI----MLVGNKADLRHLRAVS 669
            G+  +G  N       NE  +E++STIG++  T  + +D++     +WDTAGQERY+ AI  + Y+     +L YD+T   +F++ +ERW+ +  ++  S  ++     LVGNK DL   R V+
Sbjct:  180 GNPNIGDDNNHEMADPNEIVIETRSTIGIDIKTNLVNIDNRFFNVILWDTAGQERYQNAIIPSLYKKTNAVILTYDITNAKSFQSCMERWIVQALENFSSQDLLKARFFLVGNKIDLYKERQVT 303          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: DJC27_RAT (DnaJ homolog subfamily C member 27 OS=Rattus norvegicus GN=Dnajc27 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.039e-13
Identity = 37/127 (29.13%), Postives = 71/127 (55.91%), Query Frame = 1
Query:  301 KVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD-----SNIVIMLVGNKADLRHLRAV 666
            KV+ +G++ VGKS ++ R+ +  F  +  +TIG+++    ++V D+ +K  I+D AG   +  + + +Y+   G +LVYDV +  +F+ ++ WL E++          NIV ++  NK D    R +
Sbjct:   18 KVISMGNAEVGKSCIIKRYCEKRFVSKYLATIGIDYGVTKVQVRDREIKVNIFDMAGHPFFFEVRNEFYKDTQGVILVYDVGQKDSFDALDSWLAEMKQELGPHGNMENIVFVVCANKIDCSKHRCI 144          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: DJC27_PONAB (DnaJ homolog subfamily C member 27 OS=Pongo abelii GN=DNAJC27 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.039e-13
Identity = 37/127 (29.13%), Postives = 70/127 (55.12%), Query Frame = 1
Query:  301 KVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD-----SNIVIMLVGNKADLRHLRAV 666
            KV+ +G++ VGKS ++ R+ +  F  +  +TIG+++    + V D+ +K  I+D AG   +  + + +Y+   G +LVYDV +  +F+ ++ WL E++          NI+ ++  NK D    R V
Sbjct:   18 KVISMGNAEVGKSCIIKRYCEKRFVSKYLATIGIDYGVTKVHVRDREIKVNIFDMAGHPFFYEVRNEFYKDTQGVILVYDVGQKDSFDALDAWLAEMKQELGPHGNMENIIFVVCANKIDCTKHRCV 144          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: DJC27_MOUSE (DnaJ homolog subfamily C member 27 OS=Mus musculus GN=Dnajc27 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.039e-13
Identity = 37/127 (29.13%), Postives = 71/127 (55.91%), Query Frame = 1
Query:  301 KVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD-----SNIVIMLVGNKADLRHLRAV 666
            KV+ +G++ VGKS ++ R+ +  F  +  +TIG+++    ++V D+ +K  I+D AG   +  + + +Y+   G +LVYDV +  +F+ ++ WL E++          NIV ++  NK D    R +
Sbjct:   18 KVISMGNAEVGKSCIIKRYCEKRFVSKYLATIGIDYGVTKVQVRDREIKVNIFDMAGHPFFFEVRNEFYKDTQGVILVYDVGQKDSFDALDSWLAEMKQELGPHGNMDNIVFVVCANKIDCSKHRCI 144          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: DJC27_HUMAN (DnaJ homolog subfamily C member 27 OS=Homo sapiens GN=DNAJC27 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.039e-13
Identity = 37/127 (29.13%), Postives = 70/127 (55.12%), Query Frame = 1
Query:  301 KVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD-----SNIVIMLVGNKADLRHLRAV 666
            KV+ +G++ VGKS ++ R+ +  F  +  +TIG+++    + V D+ +K  I+D AG   +  + + +Y+   G +LVYDV +  +F+ ++ WL E++          NI+ ++  NK D    R V
Sbjct:   18 KVISMGNAEVGKSCIIKRYCEKRFVSKYLATIGIDYGVTKVHVRDREIKVNIFDMAGHPFFYEVRNEFYKDTQGVILVYDVGQKDSFDALDAWLAEMKQELGPHGNMENIIFVVCANKIDCTKHRCV 144          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RAS2_RHIRA (Ras-like protein 2 OS=Rhizomucor racemosus GN=RAS2 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.357e-13
Identity = 43/124 (34.68%), Postives = 70/124 (56.45%), Query Frame = 1
Query:  298 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHLRAV 666
            +K+V++GD GVGKS +  +F ++ F  E   TI   +  + + +D +     I DTAGQE Y A+   + R   G +L+Y +T + TFE V++  +++    D  +  ++LVGNK DL   R V
Sbjct:   12 YKIVMVGDGGVGKSAMTIQFIQSTFVDEYDPTIEDSYRKQCL-IDSECAMLDILDTAGQEEYSAMRERFMRNGEGFVLIYSITSYHTFEQVQKLHEQIARVKDLEHFPMVLVGNKCDLEQDRQV 134          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RAC3_ORYSJ (Rac-like GTP-binding protein 3 OS=Oryza sativa subsp. japonica GN=RAC3 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.357e-13
Identity = 43/118 (36.44%), Postives = 66/118 (55.93%), Query Frame = 1
Query:  301 KVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR 651
            K V +GD  VGK+ +L  +T N+F  +   T+   F+   + VD   V   +WDTAGQE Y  +    YRGA   +L + +    ++EN+ ++W+ EL+ H    + I+LVG K DLR
Sbjct:   10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV-VDSTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENIMKKWIPELQ-HYAPGVPIVLVGTKLDLR 125          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: DJC27_BOVIN (DnaJ homolog subfamily C member 27 OS=Bos taurus GN=DNAJC27 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.357e-13
Identity = 38/127 (29.92%), Postives = 70/127 (55.12%), Query Frame = 1
Query:  301 KVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD-----SNIVIMLVGNKADLRHLRAV 666
            KV+ +G++ VGKS ++ R+ +  F  +  +TIG+++    ++V D+ +K  I+D AG   +  + + +Y+   G +LVYDV +  +F+ ++ WL E++          NIV  +  NK D    R V
Sbjct:   18 KVISMGNAEVGKSCIIKRYCEKRFVSKYLATIGIDYGVTKVQVRDREIKVNIFDMAGDPFFYEVRNEFYKDTQGVILVYDVGQKDSFDALDTWLAEMKQDLGPHGNMENIVFAVCANKIDCTKHRCV 144          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RHO1_PEA (Rac-like GTP-binding protein RHO1 OS=Pisum sativum GN=RHO1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.773e-13
Identity = 44/118 (37.29%), Postives = 65/118 (55.08%), Query Frame = 1
Query:  301 KVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR 651
            K V +GD  VGK+ LL  +T N F  +   T+   F+   + V+   V   +WDTAGQE Y  +    YRGA   +L + +    ++ENV ++W+ EL+ H    + I+LVG K DLR
Sbjct:    8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIILVGTKLDLR 123          
The following BLAST results are available for this feature:
BLAST of CX295519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
YPT11_YEAS61.039e-1333.87GTP-binding protein YPT11 OS=Saccharomyces cerevis... [more]
YPT11_YEAS11.039e-1333.87GTP-binding protein YPT11 OS=Saccharomyces cerevis... [more]
DJC27_RAT1.039e-1329.13DnaJ homolog subfamily C member 27 OS=Rattus norve... [more]
DJC27_PONAB1.039e-1329.13DnaJ homolog subfamily C member 27 OS=Pongo abelii... [more]
DJC27_MOUSE1.039e-1329.13DnaJ homolog subfamily C member 27 OS=Mus musculus... [more]
DJC27_HUMAN1.039e-1329.13DnaJ homolog subfamily C member 27 OS=Homo sapiens... [more]
RAS2_RHIRA1.357e-1334.68Ras-like protein 2 OS=Rhizomucor racemosus GN=RAS2... [more]
RAC3_ORYSJ1.357e-1336.44Rac-like GTP-binding protein 3 OS=Oryza sativa sub... [more]
DJC27_BOVIN1.357e-1329.92DnaJ homolog subfamily C member 27 OS=Bos taurus G... [more]
RHO1_PEA1.773e-1337.29Rac-like GTP-binding protein RHO1 OS=Pisum sativum... [more]

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Properties
Property NameValue
Genbank descriptionC05073A10SK DroRLeaf1 Citrus clementina cDNA clone C05073A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295519 ID=CX295519; Name=CX295519; organism=Citrus clementina; type=EST; length=690bp
AGGTGAAAGCCTTGCTCCCGTCCCTCTCTTCCACCACCCTTCCTAAAAGG
CAATGTTAATAACATCACTCAAACAAGAAGAAGAAGAATAGCGAAAGCGT
TAGATTTTCTTGATCTGTTCCCATCATCAACTTCACCTCACCTGTCTTGC
ACACACACTCACACTTATCTCTCTCTCTCTCTCTATTGCGTTAATTGCAT
AATACACAATTCAATAAGAGAGGAGGGGAAAAAAAGAAGAAGAGAGAAAT
TGAAAAAAATGGGAGCATACAGAGCTGACGACGACTACGATTACTTGTTC
AAGGTGGTGTTAATTGGAGATTCAGGAGTTGGGAAATCAAATCTGTTATC
TCGATTCACTAAGAACGAATTCAGCCTCGAATCGAAATCCACCATCGGCG
TCGAATTCGCCACTCGCAGCATTCGCGTCGACGACAAGGTCGTCAAGGCT
CAGATTTGGGACACCGCCGGCCAAGAACGATATCGTGCTATCACAAGTGC
GTACTACCGGGGAGCTGTTGGTGCCTTGCTTGTCTATGATGTCACCCGAC
ATGTTACTTTTGAGAATGTTGAGAGATGGTTGAAAGAGCTTCGGGATCAC
ACAGACTCAAACATTGTGATAATGCTTGTGGGTAACAAGGCTGATTTGCG
TCACTTGCGTGCTGTTTCACTGAGGATGCTCAGTCGTTCG
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