CX295519

Overview
NameCX295519
Unique NameCX295519
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RAB8B_RAT (Ras-related protein Rab-8B OS=Rattus norvegicus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.141e-36
Identity = 68/128 (53.12%), Postives = 98/128 (76.56%), Query Frame = 1
Query:  286 YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVS 669
            YDYLFK++LIGDSGVGK+ LL RF+++ F+    STIG++F  R+I +D K +K QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F+N++ W++ + +H  S++  M++GNK D+   R VS
Sbjct:    5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVS 132          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RAB8B_PONAB (Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8B PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.141e-36
Identity = 68/128 (53.12%), Postives = 98/128 (76.56%), Query Frame = 1
Query:  286 YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVS 669
            YDYLFK++LIGDSGVGK+ LL RF+++ F+    STIG++F  R+I +D K +K QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F+N++ W++ + +H  S++  M++GNK D+   R VS
Sbjct:    5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVS 132          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RAB8B_MOUSE (Ras-related protein Rab-8B OS=Mus musculus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.141e-36
Identity = 68/128 (53.12%), Postives = 98/128 (76.56%), Query Frame = 1
Query:  286 YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVS 669
            YDYLFK++LIGDSGVGK+ LL RF+++ F+    STIG++F  R+I +D K +K QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F+N++ W++ + +H  S++  M++GNK D+   R VS
Sbjct:    5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVS 132          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RAB8B_HUMAN (Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8B PE=1 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 1.141e-36
Identity = 68/128 (53.12%), Postives = 98/128 (76.56%), Query Frame = 1
Query:  286 YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVS 669
            YDYLFK++LIGDSGVGK+ LL RF+++ F+    STIG++F  R+I +D K +K QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F+N++ W++ + +H  S++  M++GNK D+   R VS
Sbjct:    5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVS 132          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RAB8B_BOVIN (Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.141e-36
Identity = 68/128 (53.12%), Postives = 98/128 (76.56%), Query Frame = 1
Query:  286 YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVS 669
            YDYLFK++LIGDSGVGK+ LL RF+++ F+    STIG++F  R+I +D K +K QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F+N++ W++ + +H  S++  M++GNK D+   R VS
Sbjct:    5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVS 132          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RAB2A_RAT (Ras-related protein Rab-2A OS=Rattus norvegicus GN=Rab2a PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.490e-36
Identity = 73/127 (57.48%), Postives = 93/127 (73.23%), Query Frame = 1
Query:  286 YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV 666
            Y YLFK ++IGD+GVGKS LL +FT   F      T+GVEF  R I +D K +K QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL++ R H++SN+VIML+GNK+DL   R V
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTMGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREV 129          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RB1BV_BETVU (Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.336e-36
Identity = 71/126 (56.35%), Postives = 92/126 (73.02%), Query Frame = 1
Query:  271 RADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADL 648
            RA  DYDYL K++LIGDSGVGKS LL RF+   F+    +TIG++F  R+I +D K +K QIWDTAGQER+R IT+AYYRGA+G LLVYDVT   +F N+  W++ +  H   N+  +LVGNKAD+
Sbjct:    7 RARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADM 132          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RAB2A_DICDI (Ras-related protein Rab-2A OS=Dictyostelium discoideum GN=rab2A PE=2 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 4.336e-36
Identity = 71/128 (55.47%), Postives = 94/128 (73.44%), Query Frame = 1
Query:  286 YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVS 669
            Y +LFK ++IGD+GVGKS LL +FT   F      TIGVEF  R I +D+K +K QIWDTAGQE +R+IT +YYRG+ GALLVYD+TR  TF ++  WLK+ R + +SN+ I+L+GNK+D+   RAVS
Sbjct:    2 YSFLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKAIKLQIWDTAGQESFRSITRSYYRGSAGALLVYDITRRDTFNHLTCWLKDARSYANSNMTIILIGNKSDMESKRAVS 129          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RAB1B_DICDI (Ras-related protein Rab-1B OS=Dictyostelium discoideum GN=rab1B PE=2 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 4.336e-36
Identity = 70/122 (57.38%), Postives = 96/122 (78.69%), Query Frame = 1
Query:  283 DYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADL 648
            +YDYLFK++LIGDSGVGKS LL RF  + ++    STIGV+F  R+I +D K++K QIWDTAGQER+R ITS+YYRGA G ++VYDVT HV+F NV++W++E++ +   ++  +LVGNK DL
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTINLDGKIIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDHVSFNNVKQWMQEIQRYACDSVTRLLVGNKCDL 125          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RAB14_RAT (Ras-related protein Rab-14 OS=Rattus norvegicus GN=Rab14 PE=2 SV=3)

HSP 1 Score: 151.369 bits (381), Expect = 4.336e-36
Identity = 71/129 (55.04%), Postives = 95/129 (73.64%), Query Frame = 1
Query:  283 DYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVS 669
            +Y Y+FK ++IGD GVGKS LL +FT+ +F  +   TIGVEF TR I V  + +K QIWDTAGQER+RA+T +YYRGA GAL+VYD+TR  T+ ++  WL + R+ T+ N VI+L+GNKADL   R V+
Sbjct:    7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVT 135          
The following BLAST results are available for this feature:
BLAST of CX295519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB8B_RAT1.141e-3653.13Ras-related protein Rab-8B OS=Rattus norvegicus GN... [more]
RAB8B_PONAB1.141e-3653.13Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8... [more]
RAB8B_MOUSE1.141e-3653.13Ras-related protein Rab-8B OS=Mus musculus GN=Rab8... [more]
RAB8B_HUMAN1.141e-3653.13Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8... [more]
RAB8B_BOVIN1.141e-3653.13Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B ... [more]
RAB2A_RAT1.490e-3657.48Ras-related protein Rab-2A OS=Rattus norvegicus GN... [more]
RB1BV_BETVU4.336e-3656.35Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB... [more]
RAB2A_DICDI4.336e-3655.47Ras-related protein Rab-2A OS=Dictyostelium discoi... [more]
RAB1B_DICDI4.336e-3657.38Ras-related protein Rab-1B OS=Dictyostelium discoi... [more]
RAB14_RAT4.336e-3655.04Ras-related protein Rab-14 OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionC05073A10SK DroRLeaf1 Citrus clementina cDNA clone C05073A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295519 ID=CX295519; Name=CX295519; organism=Citrus clementina; type=EST; length=690bp
AGGTGAAAGCCTTGCTCCCGTCCCTCTCTTCCACCACCCTTCCTAAAAGG
CAATGTTAATAACATCACTCAAACAAGAAGAAGAAGAATAGCGAAAGCGT
TAGATTTTCTTGATCTGTTCCCATCATCAACTTCACCTCACCTGTCTTGC
ACACACACTCACACTTATCTCTCTCTCTCTCTCTATTGCGTTAATTGCAT
AATACACAATTCAATAAGAGAGGAGGGGAAAAAAAGAAGAAGAGAGAAAT
TGAAAAAAATGGGAGCATACAGAGCTGACGACGACTACGATTACTTGTTC
AAGGTGGTGTTAATTGGAGATTCAGGAGTTGGGAAATCAAATCTGTTATC
TCGATTCACTAAGAACGAATTCAGCCTCGAATCGAAATCCACCATCGGCG
TCGAATTCGCCACTCGCAGCATTCGCGTCGACGACAAGGTCGTCAAGGCT
CAGATTTGGGACACCGCCGGCCAAGAACGATATCGTGCTATCACAAGTGC
GTACTACCGGGGAGCTGTTGGTGCCTTGCTTGTCTATGATGTCACCCGAC
ATGTTACTTTTGAGAATGTTGAGAGATGGTTGAAAGAGCTTCGGGATCAC
ACAGACTCAAACATTGTGATAATGCTTGTGGGTAACAAGGCTGATTTGCG
TCACTTGCGTGCTGTTTCACTGAGGATGCTCAGTCGTTCG
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