CX295519

Overview
NameCX295519
Unique NameCX295519
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RAB14_PONAB (Ras-related protein Rab-14 OS=Pongo abelii GN=RAB14 PE=2 SV=3)

HSP 1 Score: 151.369 bits (381), Expect = 4.336e-36
Identity = 71/129 (55.04%), Postives = 95/129 (73.64%), Query Frame = 1
Query:  283 DYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVS 669
            +Y Y+FK ++IGD GVGKS LL +FT+ +F  +   TIGVEF TR I V  + +K QIWDTAGQER+RA+T +YYRGA GAL+VYD+TR  T+ ++  WL + R+ T+ N VI+L+GNKADL   R V+
Sbjct:    7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVT 135          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RAB14_PIG (Ras-related protein Rab-14 OS=Sus scrofa GN=RAB14 PE=2 SV=3)

HSP 1 Score: 151.369 bits (381), Expect = 4.336e-36
Identity = 71/129 (55.04%), Postives = 95/129 (73.64%), Query Frame = 1
Query:  283 DYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVS 669
            +Y Y+FK ++IGD GVGKS LL +FT+ +F  +   TIGVEF TR I V  + +K QIWDTAGQER+RA+T +YYRGA GAL+VYD+TR  T+ ++  WL + R+ T+ N VI+L+GNKADL   R V+
Sbjct:    7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVT 135          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RAB14_MOUSE (Ras-related protein Rab-14 OS=Mus musculus GN=Rab14 PE=1 SV=3)

HSP 1 Score: 151.369 bits (381), Expect = 4.336e-36
Identity = 71/129 (55.04%), Postives = 95/129 (73.64%), Query Frame = 1
Query:  283 DYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVS 669
            +Y Y+FK ++IGD GVGKS LL +FT+ +F  +   TIGVEF TR I V  + +K QIWDTAGQER+RA+T +YYRGA GAL+VYD+TR  T+ ++  WL + R+ T+ N VI+L+GNKADL   R V+
Sbjct:    7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVT 135          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RAB14_HUMAN (Ras-related protein Rab-14 OS=Homo sapiens GN=RAB14 PE=1 SV=4)

HSP 1 Score: 151.369 bits (381), Expect = 4.336e-36
Identity = 71/129 (55.04%), Postives = 95/129 (73.64%), Query Frame = 1
Query:  283 DYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVS 669
            +Y Y+FK ++IGD GVGKS LL +FT+ +F  +   TIGVEF TR I V  + +K QIWDTAGQER+RA+T +YYRGA GAL+VYD+TR  T+ ++  WL + R+ T+ N VI+L+GNKADL   R V+
Sbjct:    7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVT 135          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RAB14_CHICK (Ras-related protein Rab-14 OS=Gallus gallus GN=RAB14 PE=2 SV=3)

HSP 1 Score: 151.369 bits (381), Expect = 4.336e-36
Identity = 71/129 (55.04%), Postives = 95/129 (73.64%), Query Frame = 1
Query:  283 DYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVS 669
            +Y Y+FK ++IGD GVGKS LL +FT+ +F  +   TIGVEF TR I V  + +K QIWDTAGQER+RA+T +YYRGA GAL+VYD+TR  T+ ++  WL + R+ T+ N VI+L+GNKADL   R V+
Sbjct:    7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVT 135          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: ARA3_ARATH (Ras-related protein ARA-3 OS=Arabidopsis thaliana GN=ARA-3 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.336e-36
Identity = 71/126 (56.35%), Postives = 92/126 (73.02%), Query Frame = 1
Query:  271 RADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADL 648
            RA  DYDYL K++LIGDSGVGKS LL RF+   F+    +TIG++F  R+I +D K +K QIWDTAGQER+R IT+AYYRGA+G LLVYDVT   +F N+  W++ +  H   N+  +LVGNKAD+
Sbjct:    7 RARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADM 132          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RAB8_DISOM (Ras-related protein Rab-8 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.664e-36
Identity = 66/128 (51.56%), Postives = 97/128 (75.78%), Query Frame = 1
Query:  286 YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVS 669
            YDYLFK++LIGDSGVGK+ LL RF+++ F+    STIG++F  R++ +D K +K QIWDTAGQER+R IT+AYYRGA+G + VYD+T   +F+N++ W++ + +H  S++  M++GNK D+   R VS
Sbjct:    5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTVELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMKVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNEKRQVS 132          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RAB2B_DICDI (Ras-related protein Rab-2B OS=Dictyostelium discoideum GN=rab2B PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.262e-35
Identity = 70/133 (52.63%), Postives = 96/133 (72.18%), Query Frame = 1
Query:  271 RADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVS 669
            R    Y++LFK +++GDS VGKSNLL +F    F+  S  TIGVEF +RSI ++DK +K QIWDTAGQE++R+IT AYYRGAV A++VYD+TR  +FE++  WL + R  +  ++  +L+GNKADL   R VS
Sbjct:   16 RKSTSYEHLFKYIMVGDSAVGKSNLLLQFVDKRFAPNSDFTIGVEFGSRSININDKQIKLQIWDTAGQEKFRSITRAYYRGAVCAMIVYDITRRDSFESLNSWLTDCRKFSSCDVTTVLIGNKADLEANRQVS 148          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RAB8A_RAT (Ras-related protein Rab-8A OS=Rattus norvegicus GN=Rab8a PE=2 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.648e-35
Identity = 66/128 (51.56%), Postives = 97/128 (75.78%), Query Frame = 1
Query:  286 YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVS 669
            YDYLFK++LIGDSGVGK+ +L RF+++ F+    STIG++F  R+I +D K +K QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F+N+  W++ + +H  +++  M++GNK D+   R VS
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVS 132          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RAB8A_MOUSE (Ras-related protein Rab-8A OS=Mus musculus GN=Rab8a PE=1 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.648e-35
Identity = 66/128 (51.56%), Postives = 97/128 (75.78%), Query Frame = 1
Query:  286 YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVS 669
            YDYLFK++LIGDSGVGK+ +L RF+++ F+    STIG++F  R+I +D K +K QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F+N+  W++ + +H  +++  M++GNK D+   R VS
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVS 132          
The following BLAST results are available for this feature:
BLAST of CX295519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB14_PONAB4.336e-3655.04Ras-related protein Rab-14 OS=Pongo abelii GN=RAB1... [more]
RAB14_PIG4.336e-3655.04Ras-related protein Rab-14 OS=Sus scrofa GN=RAB14 ... [more]
RAB14_MOUSE4.336e-3655.04Ras-related protein Rab-14 OS=Mus musculus GN=Rab1... [more]
RAB14_HUMAN4.336e-3655.04Ras-related protein Rab-14 OS=Homo sapiens GN=RAB1... [more]
RAB14_CHICK4.336e-3655.04Ras-related protein Rab-14 OS=Gallus gallus GN=RAB... [more]
ARA3_ARATH4.336e-3656.35Ras-related protein ARA-3 OS=Arabidopsis thaliana ... [more]
RAB8_DISOM5.664e-3651.56Ras-related protein Rab-8 OS=Discopyge ommata PE=2... [more]
RAB2B_DICDI1.262e-3552.63Ras-related protein Rab-2B OS=Dictyostelium discoi... [more]
RAB8A_RAT1.648e-3551.56Ras-related protein Rab-8A OS=Rattus norvegicus GN... [more]
RAB8A_MOUSE1.648e-3551.56Ras-related protein Rab-8A OS=Mus musculus GN=Rab8... [more]

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Properties
Property NameValue
Genbank descriptionC05073A10SK DroRLeaf1 Citrus clementina cDNA clone C05073A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295519 ID=CX295519; Name=CX295519; organism=Citrus clementina; type=EST; length=690bp
AGGTGAAAGCCTTGCTCCCGTCCCTCTCTTCCACCACCCTTCCTAAAAGG
CAATGTTAATAACATCACTCAAACAAGAAGAAGAAGAATAGCGAAAGCGT
TAGATTTTCTTGATCTGTTCCCATCATCAACTTCACCTCACCTGTCTTGC
ACACACACTCACACTTATCTCTCTCTCTCTCTCTATTGCGTTAATTGCAT
AATACACAATTCAATAAGAGAGGAGGGGAAAAAAAGAAGAAGAGAGAAAT
TGAAAAAAATGGGAGCATACAGAGCTGACGACGACTACGATTACTTGTTC
AAGGTGGTGTTAATTGGAGATTCAGGAGTTGGGAAATCAAATCTGTTATC
TCGATTCACTAAGAACGAATTCAGCCTCGAATCGAAATCCACCATCGGCG
TCGAATTCGCCACTCGCAGCATTCGCGTCGACGACAAGGTCGTCAAGGCT
CAGATTTGGGACACCGCCGGCCAAGAACGATATCGTGCTATCACAAGTGC
GTACTACCGGGGAGCTGTTGGTGCCTTGCTTGTCTATGATGTCACCCGAC
ATGTTACTTTTGAGAATGTTGAGAGATGGTTGAAAGAGCTTCGGGATCAC
ACAGACTCAAACATTGTGATAATGCTTGTGGGTAACAAGGCTGATTTGCG
TCACTTGCGTGCTGTTTCACTGAGGATGCTCAGTCGTTCG
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