CX295519

Overview
NameCX295519
Unique NameCX295519
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RBD2A_ARATH (Ras-related protein RABD2A OS=Arabidopsis thaliana GN=RABD2A PE=1 SV=3)

HSP 1 Score: 147.902 bits (372), Expect = 4.794e-35
Identity = 71/128 (55.47%), Postives = 94/128 (73.44%), Query Frame = 1
Query:  283 DYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV 666
            +YDYLFK++LIGDSGVGKS LL RF+ + +     STIGV+F  R++  D K +K QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV++WL E+  +   N+  +LVGNK+DL   RA+
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFSDDSYVESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKSDLTENRAI 131          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: YPTV1_VOLCA (GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.262e-35
Identity = 71/128 (55.47%), Postives = 95/128 (74.22%), Query Frame = 1
Query:  283 DYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV 666
            +YDYLFK++LIGDSGVGKS LL RF  + ++    STIGV+F  R++ +D KV+K QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV++WL E+  +   N+  +LVGNK+DL   + V
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLAEIDRYASENVNKLLVGNKSDLTGKKVV 131          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RAB43_HUMAN (Ras-related protein Rab-43 OS=Homo sapiens GN=RAB43 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.262e-35
Identity = 68/132 (51.52%), Postives = 96/132 (72.73%), Query Frame = 1
Query:  277 DDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSL 672
            D+ YD+LFK+VL+GD+ VGK+ ++ RF    FS    STIGV+F  +++ +  K VK QIWDTAGQER+R IT +YYR A GA+L YD+T+  +F +V  W++++R +  SNIV +L+GNK+DL  LR VSL
Sbjct:   12 DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSL 143          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RIC1_ORYSJ (Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1 PE=2 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 8.178e-35
Identity = 72/129 (55.81%), Postives = 92/129 (71.32%), Query Frame = 1
Query:  283 DYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVS 669
            +YDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  R++  D K +K QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV++WL E+  +   N+  +LVGNK DL   R VS
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLAENRVVS 132          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RAB1_DISOM (Ras-related protein ORAB-1 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.068e-34
Identity = 71/128 (55.47%), Postives = 94/128 (73.44%), Query Frame = 1
Query:  283 DYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV 666
            +YDYLFK++LIGDSGVGKS LL RF  + ++    STIGV+F  R+I +D K +K QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV++WL+E+  +   N+  +LVGNK DL   + V
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVV 131          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RAB1A_RAT (Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 146.747 bits (369), Expect = 1.068e-34
Identity = 71/128 (55.47%), Postives = 94/128 (73.44%), Query Frame = 1
Query:  283 DYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV 666
            +YDYLFK++LIGDSGVGKS LL RF  + ++    STIGV+F  R+I +D K +K QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV++WL+E+  +   N+  +LVGNK DL   + V
Sbjct:    7 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVV 134          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RAB1A_MOUSE (Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 146.747 bits (369), Expect = 1.068e-34
Identity = 71/128 (55.47%), Postives = 94/128 (73.44%), Query Frame = 1
Query:  283 DYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV 666
            +YDYLFK++LIGDSGVGKS LL RF  + ++    STIGV+F  R+I +D K +K QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV++WL+E+  +   N+  +LVGNK DL   + V
Sbjct:    7 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVV 134          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RAB1A_HUMAN (Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3)

HSP 1 Score: 146.747 bits (369), Expect = 1.068e-34
Identity = 71/128 (55.47%), Postives = 94/128 (73.44%), Query Frame = 1
Query:  283 DYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV 666
            +YDYLFK++LIGDSGVGKS LL RF  + ++    STIGV+F  R+I +D K +K QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV++WL+E+  +   N+  +LVGNK DL   + V
Sbjct:    7 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVV 134          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RAB1A_CANFA (Ras-related protein Rab-1A OS=Canis familiaris GN=RAB1A PE=1 SV=3)

HSP 1 Score: 146.747 bits (369), Expect = 1.068e-34
Identity = 71/128 (55.47%), Postives = 94/128 (73.44%), Query Frame = 1
Query:  283 DYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV 666
            +YDYLFK++LIGDSGVGKS LL RF  + ++    STIGV+F  R+I +D K +K QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV++WL+E+  +   N+  +LVGNK DL   + V
Sbjct:    7 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVV 134          
BLAST of CX295519 vs. ExPASy Swiss-Prot
Match: RAB1A_PIG (Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A PE=2 SV=3)

HSP 1 Score: 146.362 bits (368), Expect = 1.395e-34
Identity = 71/128 (55.47%), Postives = 94/128 (73.44%), Query Frame = 1
Query:  283 DYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV 666
            +YDYLFK++LIGDSGVGKS LL RF  + ++    STIGV+F  R+I +D K +K QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV++WL+E+  +   N+  +LVGNK DL   + V
Sbjct:    7 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQGSFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVV 134          
The following BLAST results are available for this feature:
BLAST of CX295519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RBD2A_ARATH4.794e-3555.47Ras-related protein RABD2A OS=Arabidopsis thaliana... [more]
YPTV1_VOLCA6.262e-3555.47GTP-binding protein yptV1 OS=Volvox carteri GN=YPT... [more]
RAB43_HUMAN6.262e-3551.52Ras-related protein Rab-43 OS=Homo sapiens GN=RAB4... [more]
RIC1_ORYSJ8.178e-3555.81Ras-related protein RIC1 OS=Oryza sativa subsp. ja... [more]
RAB1_DISOM1.068e-3455.47Ras-related protein ORAB-1 OS=Discopyge ommata PE=... [more]
RAB1A_RAT1.068e-3455.47Ras-related protein Rab-1A OS=Rattus norvegicus GN... [more]
RAB1A_MOUSE1.068e-3455.47Ras-related protein Rab-1A OS=Mus musculus GN=Rab1... [more]
RAB1A_HUMAN1.068e-3455.47Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1... [more]
RAB1A_CANFA1.068e-3455.47Ras-related protein Rab-1A OS=Canis familiaris GN=... [more]
RAB1A_PIG1.395e-3455.47Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A ... [more]

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Properties
Property NameValue
Genbank descriptionC05073A10SK DroRLeaf1 Citrus clementina cDNA clone C05073A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295519 ID=CX295519; Name=CX295519; organism=Citrus clementina; type=EST; length=690bp
AGGTGAAAGCCTTGCTCCCGTCCCTCTCTTCCACCACCCTTCCTAAAAGG
CAATGTTAATAACATCACTCAAACAAGAAGAAGAAGAATAGCGAAAGCGT
TAGATTTTCTTGATCTGTTCCCATCATCAACTTCACCTCACCTGTCTTGC
ACACACACTCACACTTATCTCTCTCTCTCTCTCTATTGCGTTAATTGCAT
AATACACAATTCAATAAGAGAGGAGGGGAAAAAAAGAAGAAGAGAGAAAT
TGAAAAAAATGGGAGCATACAGAGCTGACGACGACTACGATTACTTGTTC
AAGGTGGTGTTAATTGGAGATTCAGGAGTTGGGAAATCAAATCTGTTATC
TCGATTCACTAAGAACGAATTCAGCCTCGAATCGAAATCCACCATCGGCG
TCGAATTCGCCACTCGCAGCATTCGCGTCGACGACAAGGTCGTCAAGGCT
CAGATTTGGGACACCGCCGGCCAAGAACGATATCGTGCTATCACAAGTGC
GTACTACCGGGGAGCTGTTGGTGCCTTGCTTGTCTATGATGTCACCCGAC
ATGTTACTTTTGAGAATGTTGAGAGATGGTTGAAAGAGCTTCGGGATCAC
ACAGACTCAAACATTGTGATAATGCTTGTGGGTAACAAGGCTGATTTGCG
TCACTTGCGTGCTGTTTCACTGAGGATGCTCAGTCGTTCG
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