CX295521

Overview
NameCX295521
Unique NameCX295521
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAB5A_HUMAN (Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5A PE=1 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 3.407e-33
Identity = 69/158 (43.67%), Postives = 96/158 (60.76%), Query Frame = -1
Query:  214 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKASCCS 687
            F  +TV  D  TVK +IWDTAGQER+ ++   YYRGA   I+VYD+T++ESF   K W+ E+ R AS N+   L GNK DL +K+ V ++ A+++AD+  + FMETSAK SMNV + FMA+   +       P  N+AR   V +       +  CCS
Sbjct:   57 FLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGANSARGRGVDLTEPTQPTRNQCCS 214          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAB5A_BOVIN (Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.449e-33
Identity = 68/158 (43.04%), Postives = 96/158 (60.76%), Query Frame = -1
Query:  214 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKASCCS 687
            F  +TV  D  TVK +IWDTAGQER+ ++   YYRGA   I+VYD+T++ESF   K W+ E+ R AS N+   L GNK DL +K+ V ++ A+++AD+  + FMETSAK SMNV + FMA+   +       P  N+ R   V +       ++ CCS
Sbjct:   57 FLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGANSTRGRGVDLTEPTQPTRSQCCS 214          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAB26_BOVIN (Ras-related protein Rab-26 OS=Bos taurus GN=RAB26 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.449e-33
Identity = 69/159 (43.40%), Postives = 104/159 (65.41%), Query Frame = -1
Query:  217 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKG--QPVNQKASCC 687
            F+ + V+ DG  VKLQIWDTAGQERFR++T +YYR AH ++++YDVT++ SF++++ WL EI  +A ++V  +L+GNK D   ++ V  E A+  A + G+PFMETSAK  +NV+ AF A+  ++K R    P+      P  Q+    +   + ASCC
Sbjct:  101 FRNKVVDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDSIQAWLTEIQEHAQDDVVLMLLGNKVDSAQERAVKREDAEKLAKDYGLPFMETSAKTGLNVDLAFTAIAKELKQRHTKAPS-----EPRFQLHDYIKREGRGASCC 254          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAB12_CANFA (Ras-related protein Rab-12 (Fragment) OS=Canis familiaris GN=RAB12 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.449e-33
Identity = 69/150 (46.00%), Postives = 101/150 (67.33%), Query Frame = -1
Query:  241 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEI-GIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQP 687
            FKI+TVE  GK ++LQIWDTAGQERF +ITS+YYR A GII+VYD+T +E+F+++ +W+  ID+YASE+   LLVGNK D    + ++ +  + FA EI G+ F E SAKD+ NV++ F+ +  DI  +M      N      + ++ +P
Sbjct:   43 FKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAHEITGMRFCEASAKDNFNVDEIFLKLVDDILKKMPLDILRNELSNSILSLQPEP 192          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RGP2_ORYSJ (Ras-related protein RGP2 OS=Oryza sativa subsp. japonica GN=RGP2 PE=2 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 5.811e-33
Identity = 69/168 (41.07%), Postives = 110/168 (65.48%), Query Frame = -1
Query:  214 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADI-----KNRMASQPAMNNARP-----PTVQIKGQPVNQKASCCS 687
            F  ++++ +GKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+T ++SF+NV +WL E+  +A  ++  ++VGNK DL   + VS +  KA A++ G+ F+ETSA +++NVE+AF  +  ++     +  +A++ A   + P      T+ I     N K +CCS
Sbjct:   49 FATKSLQMEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQSFDNVHRWLRELRDHADSSIVIMMVGNKSDLIHLRAVSEDEGKALAEKEGLFFLETSAMEAVNVEEAFQTIITEVYGIVNRKALAAKEAAAASAPLPSQGKTISIDSAAGNTKRACCS 216          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAA2A_ARATH (Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.811e-33
Identity = 70/168 (41.67%), Postives = 109/168 (64.88%), Query Frame = -1
Query:  211 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIK-GQPV--------NQKASCCST 687
            F  RT++ +G+TVK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL E+  +A  N+  +L+GNK DL   + V+ E A+++A++ G+ F+ETSA +++NVE+AF  + +++   ++ +   ++       IK GQ +        N K  CCS+
Sbjct:   49 FATRTLQVEGRTVKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMLIGNKTDLKHLRAVATEDAQSYAEKEGLSFIETSALEALNVEKAFQTILSEVYRIISKKSISSDQTTANANIKEGQTIDVAATSESNAKKPCCSS 216          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAB5A_PIG (Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.589e-33
Identity = 68/158 (43.04%), Postives = 96/158 (60.76%), Query Frame = -1
Query:  214 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKASCCS 687
            F  +TV  D  TVK +IWDTAGQER+ ++   YYRGA   I+VYD+T++ESF   K W+ E+ R AS N+   L GNK DL +K+ V ++ A+++AD+  + FMETSAK SMNV + FMA+   +       P +N  R   V +       ++ CCS
Sbjct:   57 FLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGINCTRGRGVDLTEPTQPTRSQCCS 214          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAB12_HUMAN (Putative Ras-related protein Rab-12 OS=Homo sapiens GN=RAB12 PE=5 SV=3)

HSP 1 Score: 140.584 bits (353), Expect = 7.589e-33
Identity = 68/150 (45.33%), Postives = 101/150 (67.33%), Query Frame = -1
Query:  241 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEI-GIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQP 687
            FKI+TVE  GK ++LQIWDTAGQERF +ITS+YYR A GII+VYD+T +E+F+++ +W+  ID+YASE+   LLVGNK D    + ++ +  + FA +I G+ F E SAKD+ NV++ F+ +  DI  +M      N      + ++ +P
Sbjct:   79 FKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKMPLDILRNELSNSILSLQPEP 228          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RB11A_RAT (Ras-related protein Rab-11A OS=Rattus norvegicus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 140.198 bits (352), Expect = 9.912e-33
Identity = 75/172 (43.60%), Postives = 105/172 (61.05%), Query Frame = -1
Query:  217 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNAR---------------PPTVQIKGQPVNQKASCC 687
            F  R+++ DGKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+  +LVGNK DL   + V  + A+AFA++ G+ F+ETSA DS NVE AF  +  +I  R+ SQ  M++ R               PPT + K      K  CC
Sbjct:   48 FATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI-YRIVSQKQMSDRRENDMSPSNNVVPIHVPPTTENK-----PKVQCC 213          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RB11A_RABIT (Ras-related protein Rab-11A OS=Oryctolagus cuniculus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 140.198 bits (352), Expect = 9.912e-33
Identity = 75/172 (43.60%), Postives = 105/172 (61.05%), Query Frame = -1
Query:  217 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNAR---------------PPTVQIKGQPVNQKASCC 687
            F  R+++ DGKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+  +LVGNK DL   + V  + A+AFA++ G+ F+ETSA DS NVE AF  +  +I  R+ SQ  M++ R               PPT + K      K  CC
Sbjct:   48 FATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI-YRIVSQKQMSDRRENDMSPSNNVVPIHVPPTTENK-----PKVQCC 213          
The following BLAST results are available for this feature:
BLAST of CX295521 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB5A_HUMAN3.407e-3343.67Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5... [more]
RAB5A_BOVIN4.449e-3343.04Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A ... [more]
RAB26_BOVIN4.449e-3343.40Ras-related protein Rab-26 OS=Bos taurus GN=RAB26 ... [more]
RAB12_CANFA4.449e-3346.00Ras-related protein Rab-12 (Fragment) OS=Canis fam... [more]
RGP2_ORYSJ5.811e-3341.07Ras-related protein RGP2 OS=Oryza sativa subsp. ja... [more]
RAA2A_ARATH5.811e-3341.67Ras-related protein RABA2a OS=Arabidopsis thaliana... [more]
RAB5A_PIG7.589e-3343.04Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A ... [more]
RAB12_HUMAN7.589e-3345.33Putative Ras-related protein Rab-12 OS=Homo sapien... [more]
RB11A_RAT9.912e-3343.60Ras-related protein Rab-11A OS=Rattus norvegicus G... [more]
RB11A_RABIT9.912e-3343.60Ras-related protein Rab-11A OS=Oryctolagus cunicul... [more]

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Properties
Property NameValue
Genbank descriptionC05073A12SK DroRLeaf1 Citrus clementina cDNA clone C05073A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295521 ID=CX295521; Name=CX295521; organism=Citrus clementina; type=EST; length=687bp
GCCACTATCAAGCAACTCCTCATTTGTACATGCCATATAATAGTAATATA
GACTGAAAGAATTGAAATTTCACAATAACTTACAAAAACTAGTAAAGCAA
TCCGTCATATGATTCATGGGGTAGGAATAGTTTTTCACTGGTTCCTACAA
CGTGATTGAGAAAGCTACCCATAAACAAATGCACGCAATGAAGGATAAGA
CAAACGATTAAGTTGAGCAGCAGCTGGCCTTCTGGTTCACCGGTTGTCCT
TTTATCTGCACAGTTGGTGGCCTTGCATTGTTCATTGCAGGTTGACTTGC
CATCCTGTTCTTAATGTCAGCAGTCATAGCCATAAAAGCTTGTTCCACGT
TCATAGAATCCTTTGCGCTGGTCTCCATGAACGGGATGCCAATTTCATCA
GCAAATGCCTTCGCTGTTTCATAAGAGACAACCTTCTTATCAGTGAGATC
ACACTTGTTTCCAACCAGAAGCTTGTTTACATTTTCACTTGCATAGCGAT
CAATTTCATTCAACCACTGCTTAACGTTGTTGAAGCTCTCTTGGTCTGTA
ACATCATAAACAATGATAATGCCATGTGCTCCACGGTAGTAGCTGCTAGT
GATTGTCCTGAATCGTTCTTGCCCTGCAGTGTCCCAAATTTGGAGTTTTA
CAGTCTTCCCGTCTTGCTCCACTGTGCGAATTTTAAA
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