CX295521

Overview
NameCX295521
Unique NameCX295521
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAB2B_MAIZE (Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.208e-32
Identity = 65/129 (50.39%), Postives = 91/129 (70.54%), Query Frame = -1
Query:  301 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRM 687
            F  R +  D K +KLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL +  ++A+ N+  +LVGNKCDL+ ++ VSYE  + FA E G+ FME SAK + NVE+AF+     I  ++
Sbjct:   43 FGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNKCDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKI 171          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: YPTC4_CHLRE (GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii GN=YPTC4 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.884e-32
Identity = 71/171 (41.52%), Postives = 104/171 (60.82%), Query Frame = -1
Query:  217 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQP--------------AMNNARPPTVQIKGQPVNQKASCC 687
            F  R +  DGK +KLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL +  ++A+ N+  +L+GNKCDLT ++ V+ E  + FA E G+ F+ETSA+ + NVE+AF+    +I  ++                     NA P TV+       + +SCC
Sbjct:   43 FGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKIQDGVFDVSNESYGIKVGYGGGNAGPQTVKPGEGGAAKSSSCC 213          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAB19_HUMAN (Ras-related protein Rab-19 OS=Homo sapiens GN=RAB19 PE=2 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 2.884e-32
Identity = 62/126 (49.21%), Postives = 93/126 (73.81%), Query Frame = -1
Query:  313 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIG-IPFMETSAKDSMNVEQAFMAMTADI 687
            F +R+++ DGK VK+Q+WDTAGQERFRTIT SYYR AH  II YD+T + +F ++  W++EI++Y + NV  +L+GNKCDL +K+ V +E A   A++ G +  +ETSAK+S N+E+ F+ M  ++
Sbjct:   54 FTVRSLDIDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESIPHWIHEIEKYGAANVVIMLIGNKCDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIEEVFVLMAKEL 179          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAA2C_ARATH (Ras-related protein RABA2c OS=Arabidopsis thaliana GN=RABA2C PE=2 SV=4)

HSP 1 Score: 138.658 bits (348), Expect = 2.884e-32
Identity = 71/169 (42.01%), Postives = 109/169 (64.50%), Query Frame = -1
Query:  211 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADI-----KNRMASQ--PAMNNARP---PTVQIKGQPVNQKASCCST 687
            F  RT + +GKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+T +++F+NV +WL E+  +A  N+  ++ GNK DL   + V+ E  ++ A++ G+ F+ETSA ++ NVE+AF  +  +I     K  +A+Q   A N+A P    T+ +       K +CCS+
Sbjct:   49 FATRTTQVEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQSLAEKEGLSFLETSALEATNVEKAFQTILGEIYHIISKKALAAQEAAAANSAIPGQGTTINVDDTSGGAKRACCSS 217          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RGP1_ORYSJ (Ras-related protein RGP1 OS=Oryza sativa subsp. japonica GN=RGP1 PE=2 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 3.766e-32
Identity = 75/170 (44.12%), Postives = 109/170 (64.12%), Query Frame = -1
Query:  217 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADI------KNRMASQPAMNNA-----RPPTVQIKGQ--PVNQKASCC 687
            F+ RT+  D +TVK QIWDTAGQER+R +TS+YYRGA G ++VYD+T ++SF++V +WL E+  +A +N+  +L+GNK DL   +VV  E AK FA+   + FMETSA +S NVE AFM +  +I      KN +A++   ++      +   + + GQ      KASCC
Sbjct:   55 FQTRTLHIDARTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKNIVIMLIGNKSDLGTLRVVPTEDAKEFAERENLFFMETSALESTNVENAFMTVLTEIYRIVSKKNLVANEEVDSSGNSSLLKGTKIVVPGQEPAPPTKASCC 224          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RB43L_HUMAN (Putative Rab-43-like protein ENSP00000330714 OS=Homo sapiens PE=5 SV=3)

HSP 1 Score: 138.272 bits (347), Expect = 3.766e-32
Identity = 69/157 (43.95%), Postives = 102/157 (64.97%), Query Frame = -1
Query:  220 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGI-PFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKASC 687
            F ++T+E  GK VKLQIWDTAGQERFRTIT SYYR A+G I+ YD+T + SF +V  W+ ++ +YA  N+ +LL+GNK DL++ + VS   A++ A+   I   +ETSAKDS NVE+AF+ +  ++  R    P  +   P  +Q+  + + +   C
Sbjct:   24 FTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHGG-PLFSEKSPDHIQLNSKDIGEGWGC 179          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RB11A_LOTJA (Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.766e-32
Identity = 63/127 (49.61%), Postives = 95/127 (74.80%), Query Frame = -1
Query:  307 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKN 687
            F+ RT+  D KTVK QIWDTAGQER+R +TS+YYRGA G ++VYD+T +++F+++ +WL E+  +A +N+  +L+GNKCDL +++ V  E AK FA++ G+ F+ETSA ++ NVE AF  +  +I N
Sbjct:   54 FQTRTLVIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIVIILIGNKCDLVNQRDVPTEDAKEFAEKEGLFFLETSALEATNVESAFTTVLTEIYN 180          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAB43_HUMAN (Ras-related protein Rab-43 OS=Homo sapiens GN=RAB43 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.766e-32
Identity = 69/157 (43.95%), Postives = 102/157 (64.97%), Query Frame = -1
Query:  220 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGI-PFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKASC 687
            F ++T+E  GK VKLQIWDTAGQERFRTIT SYYR A+G I+ YD+T + SF +V  W+ ++ +YA  N+ +LL+GNK DL++ + VS   A++ A+   I   +ETSAKDS NVE+AF+ +  ++  R    P  +   P  +Q+  + + +   C
Sbjct:   55 FTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHGG-PLFSEKSPDHIQLNSKDIGEGWGC 210          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: ARA1_ARATH (Ras-related protein ARA-1 OS=Arabidopsis thaliana GN=ARA-1 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.766e-32
Identity = 66/130 (50.77%), Postives = 95/130 (73.08%), Query Frame = -1
Query:  298 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMA 687
            F+ +++E +GK VK QIWDTAGQERFR +TS+YYRGA G ++VYD+T + +F +V +WL+E+  ++   V ++LVGNKCDL + + VS E  KA A+E G+ F+ETSA DS NV+ AF  +  DI N ++
Sbjct:   49 FQTQSMEIEGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRTTFESVGRWLDELKIHSDTTVARMLVGNKCDLENIRAVSVEEGKALAEEEGLFFVETSALDSTNVKTAFEMVILDIYNNVS 178          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: YPTV4_VOLCA (GTP-binding protein yptV4 OS=Volvox carteri GN=YPTV4 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.919e-32
Identity = 63/129 (48.84%), Postives = 93/129 (72.09%), Query Frame = -1
Query:  301 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRM 687
            F  R +  DGK +KLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL +  ++A+ N+  +L+GNKCDLT ++ V+ E  + FA E G+ F+ETSA+ + NVE+AF+    +I  ++
Sbjct:   43 FGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKI 171          
The following BLAST results are available for this feature:
BLAST of CX295521 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB2B_MAIZE2.208e-3250.39Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B P... [more]
YPTC4_CHLRE2.884e-3241.52GTP-binding protein YPTC4 OS=Chlamydomonas reinhar... [more]
RAB19_HUMAN2.884e-3249.21Ras-related protein Rab-19 OS=Homo sapiens GN=RAB1... [more]
RAA2C_ARATH2.884e-3242.01Ras-related protein RABA2c OS=Arabidopsis thaliana... [more]
RGP1_ORYSJ3.766e-3244.12Ras-related protein RGP1 OS=Oryza sativa subsp. ja... [more]
RB43L_HUMAN3.766e-3243.95Putative Rab-43-like protein ENSP00000330714 OS=Ho... [more]
RB11A_LOTJA3.766e-3249.61Ras-related protein Rab11A OS=Lotus japonicus GN=R... [more]
RAB43_HUMAN3.766e-3243.95Ras-related protein Rab-43 OS=Homo sapiens GN=RAB4... [more]
ARA1_ARATH3.766e-3250.77Ras-related protein ARA-1 OS=Arabidopsis thaliana ... [more]
YPTV4_VOLCA4.919e-3248.84GTP-binding protein yptV4 OS=Volvox carteri GN=YPT... [more]

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Properties
Property NameValue
Genbank descriptionC05073A12SK DroRLeaf1 Citrus clementina cDNA clone C05073A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295521 ID=CX295521; Name=CX295521; organism=Citrus clementina; type=EST; length=687bp
GCCACTATCAAGCAACTCCTCATTTGTACATGCCATATAATAGTAATATA
GACTGAAAGAATTGAAATTTCACAATAACTTACAAAAACTAGTAAAGCAA
TCCGTCATATGATTCATGGGGTAGGAATAGTTTTTCACTGGTTCCTACAA
CGTGATTGAGAAAGCTACCCATAAACAAATGCACGCAATGAAGGATAAGA
CAAACGATTAAGTTGAGCAGCAGCTGGCCTTCTGGTTCACCGGTTGTCCT
TTTATCTGCACAGTTGGTGGCCTTGCATTGTTCATTGCAGGTTGACTTGC
CATCCTGTTCTTAATGTCAGCAGTCATAGCCATAAAAGCTTGTTCCACGT
TCATAGAATCCTTTGCGCTGGTCTCCATGAACGGGATGCCAATTTCATCA
GCAAATGCCTTCGCTGTTTCATAAGAGACAACCTTCTTATCAGTGAGATC
ACACTTGTTTCCAACCAGAAGCTTGTTTACATTTTCACTTGCATAGCGAT
CAATTTCATTCAACCACTGCTTAACGTTGTTGAAGCTCTCTTGGTCTGTA
ACATCATAAACAATGATAATGCCATGTGCTCCACGGTAGTAGCTGCTAGT
GATTGTCCTGAATCGTTCTTGCCCTGCAGTGTCCCAAATTTGGAGTTTTA
CAGTCTTCCCGTCTTGCTCCACTGTGCGAATTTTAAA
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