CX295521

Overview
NameCX295521
Unique NameCX295521
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RB11A_BOVIN (Ras-related protein Rab-11A OS=Bos taurus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 137.887 bits (346), Expect = 4.919e-32
Identity = 74/172 (43.02%), Postives = 104/172 (60.47%), Query Frame = -1
Query:  217 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNAR---------------PPTVQIKGQPVNQKASCC 687
            F  R+++ DGKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+  +LVGNK DL   + V  + A+AFA++ G+ F+ETSA D  NVE AF  +  +I  R+ SQ  M++ R               PPT + K      K  CC
Sbjct:   48 FATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDYTNVEAAFQTILTEI-YRIVSQKQMSDRRENDMSPSNNVVPIHVPPTTENK-----PKVQCC 213          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: YPT3_SCHPO (GTP-binding protein ypt3 OS=Schizosaccharomyces pombe GN=ypt3 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.425e-32
Identity = 67/125 (53.60%), Postives = 87/125 (69.60%), Query Frame = -1
Query:  313 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADI 687
            F  R +  D K +K QIWDTAGQER+R ITS+YYRGA G +IVYD+T Q SF+NV +WL E+  +A  N+  +LVGNK DL   + VS E A+AFA E  + F+ETSA D+ NVE+AF  +  +I
Sbjct:   47 FATRNIVLDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGNKTDLLHLRAVSTEEAQAFAAENNLSFIETSAMDASNVEEAFQTVLTEI 171          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RB11C_TOBAC (Ras-related protein Rab11C OS=Nicotiana tabacum GN=RAB11C PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.425e-32
Identity = 69/171 (40.35%), Postives = 109/171 (63.74%), Query Frame = -1
Query:  211 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADI-----KNRMASQPAMNNARPPTVQIK-------GQPVNQKASCCST 687
            F+ RT+    K+VK QIWDTAGQER+R +TS+YYRGA G ++VYD+T +++F+++ +WL E+  +A  N+  +L GNK DL D++ V  E AK FA + G+ F+ETSA ++  +E AF+ +  +I     K  +A+    +N+ P ++  K       GQ +  K +CCS+
Sbjct:   52 FQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLTGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATKLEDAFLTVLTEIFNIVNKKNLAADENQSNSNPASLTGKKILVPGPGQVIPGKKACCSS 222          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAB2A_DICDI (Ras-related protein Rab-2A OS=Dictyostelium discoideum GN=rab2A PE=2 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 8.391e-32
Identity = 63/129 (48.84%), Postives = 91/129 (70.54%), Query Frame = -1
Query:  301 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRM 687
            F  R +  D K +KLQIWDTAGQE FR+IT SYYRG+ G ++VYD+T +++FN++  WL +   YA+ N+  +L+GNK D+  K+ VSYE  + FADE G+ F+ETSAK + NVE+AF+   + I  ++
Sbjct:   42 FGARMITIDNKAIKLQIWDTAGQESFRSITRSYYRGSAGALLVYDITRRDTFNHLTCWLKDARSYANSNMTIILIGNKSDMESKRAVSYEEGRQFADENGLIFLETSAKTASNVEEAFVNTASKIYEKI 170          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: YPTC6_CHLRE (Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii GN=YPTC6 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.096e-31
Identity = 71/169 (42.01%), Postives = 105/169 (62.13%), Query Frame = -1
Query:  214 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPV-----------NQKASCCS 687
            F  R+++ DGKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+T   +F NV++WL E+  +A  N+  +LVGNK DL   + V  E A+AF +  G+ F+ETSA +S NVE+AF  +  +I + ++ +   +    P +  +G+ V            +K  CCS
Sbjct:   49 FATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKSVTFENVERWLKELRDHADSNIVIMLVGNKSDLKHLRDVQTEVAQAFCEREGLSFIETSALESTNVEKAFQQILTEIYHIVSKKVLDSEDNRPKIG-EGRDVIVIDNAHDDGGKKKGGCCS 216          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAB12_RAT (Ras-related protein Rab-12 (Fragment) OS=Rattus norvegicus GN=Rab12 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.431e-31
Identity = 65/130 (50.00%), Postives = 93/130 (71.54%), Query Frame = -1
Query:  301 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEI-GIPFMETSAKDSMNVEQAFMAMTADIKNRM 687
            FKI+TVE  GK ++LQIWDTAGQERF +ITS+YYR A GII+VYD+T +E+F+++ +W+  ID+YASE+   LL GNK D    + +S +  + FA +I G+   E SAKD+ NV++ F+ +  DI  +M
Sbjct:   32 FKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLAGNKLDCETDREISRQQGEKFAQQITGMRLSEPSAKDNFNVDEIFLKLVDDILKKM 161          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAA1A_ARATH (Ras-related protein RABA1a OS=Arabidopsis thaliana GN=RABA1A PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.431e-31
Identity = 69/166 (41.57%), Postives = 96/166 (57.83%), Query Frame = -1
Query:  214 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVN--------QKASCCS 687
            F  +T + +GK VK QIWDTAGQER+R ITS+YYRGA G +++YDVT   +F N  +WL E+  +   N+  +L+GNKCDL     V  E AKAFA+   + FMETSA D+ NVE AF  +   I   ++ +          +  KG+ +N        ++  CCS
Sbjct:   50 FATKTTKVEGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLIYDVTRHATFENAARWLRELRGHTDPNIVVMLIGNKCDLRHLVAVKTEEAKAFAERESLYFMETSALDATNVENAFTEVLTQIHKIVSKRSVDGGGESADLPGKGETINVKEDGSVLKRMGCCS 215          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAB5B_CHICK (Ras-related protein Rab-5B OS=Gallus gallus GN=RAB5B PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.869e-31
Identity = 67/158 (42.41%), Postives = 94/158 (59.49%), Query Frame = -1
Query:  214 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKASCCS 687
            F  ++V  D  TVK +IWDTAGQER+ ++   YYRGA   I+VYD+T+QE+F   K W+ E+ R AS ++   L GNK DL  K++V YE A+A+AD+  + FMETSAK +MNV   F+A+   +        +    R   V +  Q    K+ CCS
Sbjct:   57 FLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLASKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQSTSGAAGRSRGVDLHEQTQQNKSQCCS 214          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAB18_DICDI (Ras-related protein Rab-18 OS=Dictyostelium discoideum GN=rab18 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.869e-31
Identity = 73/161 (45.34%), Postives = 107/161 (66.46%), Query Frame = -1
Query:  220 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADI----KNRMASQPAMNNARPPTVQIKGQPVNQKASC 687
            FK++ V+ DGK V L IWDTAGQE+FR + SSYYRGAHGII+ YDVT +ESF+N+  WLNE++ +A+  N+ KLLVGNK D  +++V   E A+ FA +  + F+E SAK  + ++QAF  +   I    +N  +SQP   N    +V+++ +P + +  C
Sbjct:   43 FKMKEVKVDGKKVDLCIWDTAGQEKFRALISSYYRGAHGIILTYDVTKRESFDNLNYWLNEVENFANRSNLVKLLVGNKIDKENREVTREEGAE-FAKKKAMLFIECSAKSKIGIQQAFEELAQKIIEIPQNTSSSQPKQRNT--GSVKVEDEPDHNQGVC 200          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: ARA4_ARATH (Ras-related protein ARA-4 OS=Arabidopsis thaliana GN=ARA-4 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.869e-31
Identity = 70/165 (42.42%), Postives = 105/165 (63.64%), Query Frame = -1
Query:  214 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQ------IKGQPVNQKA-SCCS 687
            F+ +++  DGK VK QIWDTAGQERFR +TS+YYRGA G ++VYD+T   +F NV +WL+E++ ++   V K+L+GNKCDL   + VS E  K+ A+  G+ FMETSA DS NV+ AF  +  +I + ++ +   +++    +       +K +    K  SCCS
Sbjct:   49 FQTQSMLIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRSSTFENVGRWLDELNTHSDTTVAKMLIGNKCDLESIRAVSVEEGKSLAESEGLFFMETSALDSTNVKTAFEMVIREIYSNISRKQLNSDSYKEELTVNRVSLVKNENEGTKTFSCCS 213          
The following BLAST results are available for this feature:
BLAST of CX295521 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11A_BOVIN4.919e-3243.02Ras-related protein Rab-11A OS=Bos taurus GN=RAB11... [more]
YPT3_SCHPO6.425e-3253.60GTP-binding protein ypt3 OS=Schizosaccharomyces po... [more]
RB11C_TOBAC6.425e-3240.35Ras-related protein Rab11C OS=Nicotiana tabacum GN... [more]
RAB2A_DICDI8.391e-3248.84Ras-related protein Rab-2A OS=Dictyostelium discoi... [more]
YPTC6_CHLRE1.096e-3142.01Ras-related protein YPTC6 OS=Chlamydomonas reinhar... [more]
RAB12_RAT1.431e-3150.00Ras-related protein Rab-12 (Fragment) OS=Rattus no... [more]
RAA1A_ARATH1.431e-3141.57Ras-related protein RABA1a OS=Arabidopsis thaliana... [more]
RAB5B_CHICK1.869e-3142.41Ras-related protein Rab-5B OS=Gallus gallus GN=RAB... [more]
RAB18_DICDI1.869e-3145.34Ras-related protein Rab-18 OS=Dictyostelium discoi... [more]
ARA4_ARATH1.869e-3142.42Ras-related protein ARA-4 OS=Arabidopsis thaliana ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05073A12SK DroRLeaf1 Citrus clementina cDNA clone C05073A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295521 ID=CX295521; Name=CX295521; organism=Citrus clementina; type=EST; length=687bp
GCCACTATCAAGCAACTCCTCATTTGTACATGCCATATAATAGTAATATA
GACTGAAAGAATTGAAATTTCACAATAACTTACAAAAACTAGTAAAGCAA
TCCGTCATATGATTCATGGGGTAGGAATAGTTTTTCACTGGTTCCTACAA
CGTGATTGAGAAAGCTACCCATAAACAAATGCACGCAATGAAGGATAAGA
CAAACGATTAAGTTGAGCAGCAGCTGGCCTTCTGGTTCACCGGTTGTCCT
TTTATCTGCACAGTTGGTGGCCTTGCATTGTTCATTGCAGGTTGACTTGC
CATCCTGTTCTTAATGTCAGCAGTCATAGCCATAAAAGCTTGTTCCACGT
TCATAGAATCCTTTGCGCTGGTCTCCATGAACGGGATGCCAATTTCATCA
GCAAATGCCTTCGCTGTTTCATAAGAGACAACCTTCTTATCAGTGAGATC
ACACTTGTTTCCAACCAGAAGCTTGTTTACATTTTCACTTGCATAGCGAT
CAATTTCATTCAACCACTGCTTAACGTTGTTGAAGCTCTCTTGGTCTGTA
ACATCATAAACAATGATAATGCCATGTGCTCCACGGTAGTAGCTGCTAGT
GATTGTCCTGAATCGTTCTTGCCCTGCAGTGTCCCAAATTTGGAGTTTTA
CAGTCTTCCCGTCTTGCTCCACTGTGCGAATTTTAAA
back to top