CX295521

Overview
NameCX295521
Unique NameCX295521
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9361 contig Ccv1_Contig9361:299..985. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAB8B_DICDI (Ras-related protein Rab-8B OS=Dictyostelium discoideum GN=rab8B PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 8.352e-48
Identity = 89/157 (56.69%), Postives = 120/157 (76.43%), Query Frame = -1
Query:  217 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKASCC 687
            FKIRT+E +GK +KLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD++SF +++ W+  I+++AS++VNK+L+GNKCD+T+KKVV     K+ ADE GI F+ETSAK+S+NVE+AF+ +  DIK RM   P       P   I   P N+K +CC
Sbjct:   52 FKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGSIRNWIRNIEQHASDSVNKMLIGNKCDMTEKKVVDSSRGKSLADEYGIKFLETSAKNSVNVEEAFIGLAKDIKKRMIDTP-----NDPDHTICITPNNKKNTCC 203          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RB1BV_BETVU (Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.274e-45
Identity = 89/164 (54.27%), Postives = 120/164 (73.17%), Query Frame = -1
Query:  211 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTD-KKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPP-TVQIKGQPVNQ---KASCCST 687
            FKIRT+E DGK +KLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W+  I+++AS+NVNK+LVGNK D+ + K+ V     +A ADE GI F ETSAK ++NVE+ F ++  DIK R+A       A+P  T++   Q  NQ   K++CC +
Sbjct:   52 FKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADSDTRQEAQPSITIKPADQSGNQAAAKSACCGS 215          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: ARA3_ARATH (Ras-related protein ARA-3 OS=Arabidopsis thaliana GN=ARA-3 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.129e-44
Identity = 90/168 (53.57%), Postives = 121/168 (72.02%), Query Frame = -1
Query:  211 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTD-KKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIK--------GQPVNQKASCCST 687
            FKIRT+E DGK +KLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W+  I+++AS+NVNK+LVGNK D+ + K+ V     +A ADE GI F ETSAK ++NVE+ F ++  DIK R++     + A P T++I         GQ   QK++CC T
Sbjct:   52 FKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIGRDIKQRLSDTD--SRAEPATIKISQTDQAAGAGQ-ATQKSACCGT 216          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAB1C_DICDI (Ras-related protein Rab-1C OS=Dictyostelium discoideum GN=Rab1C PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.925e-44
Identity = 80/126 (63.49%), Postives = 106/126 (84.13%), Query Frame = -1
Query:  310 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIK 687
            F IRT+E DGK +KLQIWDTAGQERF+TIT+SYYRGAHG+IIVYD+T  +SFN++K+WL ++DR+AS +V KL+VGNKCDL  K+ V ++ AK FADE+ IP METSAK+S  +++AF+ + +DIK
Sbjct:   70 FCIRTIELDGKKIKLQIWDTAGQERFKTITTSYYRGAHGLIIVYDITSMDSFNSIKRWLIDVDRFASPSVLKLIVGNKCDLNSKRAVDFKIAKKFADELNIPIMETSAKESTAIDEAFIKLASDIK 195          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: YPTV2_VOLCA (GTP-binding protein yptV2 OS=Volvox carteri GN=YPTV2 PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.602e-44
Identity = 92/167 (55.09%), Postives = 115/167 (68.86%), Query Frame = -1
Query:  217 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT-DKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVN---------QKASCC 687
            FKI+ V+ DGK VKLQIWDTAGQERFRTITS+YYRGA GII+VYD+TD+ SFNNV+ W+  I+++AS+NVNK+LVGNK DL  DK+VVS    +A ADE G  F ETSAKD+++VE+AF+A+  D+  RM  + A             QPV          Q  SCC
Sbjct:   50 FKIKKVDVDGKLVKLQIWDTAGQERFRTITSAYYRGAQGIILVYDITDEASFNNVRNWMRNIEQHASDNVNKILVGNKLDLAEDKRVVSIARGQALADEFGFRFYETSAKDNVHVEEAFIAVAKDVLARMEGEHANQQLLQQQQLSAAQPVRLTSGSPSPAQGKSCC 216          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: YPT2_SCHPO (GTP-binding protein ypt2 OS=Schizosaccharomyces pombe GN=ypt2 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.380e-42
Identity = 75/128 (58.59%), Postives = 107/128 (83.59%), Query Frame = -1
Query:  304 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNR 687
            FKIRT+E DGK +KLQIWDTAGQERFRTIT++YYRGA GI+++YDVTD++SF+NV+ W + ++++ASENV K+L+GNKCD  D++ VS+E  +A ADE+G+ F+E SAK ++NV++AF  +  +IK +
Sbjct:   46 FKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCDCEDQRQVSFEQGQALADELGVKFLEASAKTNVNVDEAFFTLAREIKKQ 173          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAB8A_MACFA (Ras-related protein Rab-8A OS=Macaca fascicularis GN=RAB8A PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.802e-42
Identity = 85/172 (49.42%), Postives = 118/172 (68.60%), Query Frame = -1
Query:  172 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKASCCST*SFVLSFIACICL 687
            FKIRT+E DGK +KLQIWDTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N++ W+  I+ +AS +V K+++GNKCD+ DK+ VS E  +  A + GI FMETSAK ++NVE AF  +  DIK +M  +   N+ +     +K  P  QK S         SF  C+ L
Sbjct:   45 FKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSNQGVKITPDQQKRS---------SFFRCVLL 207          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAB8A_HUMAN (Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8A PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.802e-42
Identity = 85/172 (49.42%), Postives = 118/172 (68.60%), Query Frame = -1
Query:  172 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKASCCST*SFVLSFIACICL 687
            FKIRT+E DGK +KLQIWDTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N++ W+  I+ +AS +V K+++GNKCD+ DK+ VS E  +  A + GI FMETSAK ++NVE AF  +  DIK +M  +   N+ +     +K  P  QK S         SF  C+ L
Sbjct:   45 FKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSNQGVKITPDQQKRS---------SFFRCVLL 207          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAB8A_CANFA (Ras-related protein Rab-8A OS=Canis familiaris GN=RAB8A PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.802e-42
Identity = 85/172 (49.42%), Postives = 118/172 (68.60%), Query Frame = -1
Query:  172 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKASCCST*SFVLSFIACICL 687
            FKIRT+E DGK +KLQIWDTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N++ W+  I+ +AS +V K+++GNKCD+ DK+ VS E  +  A + GI FMETSAK ++NVE AF  +  DIK +M  +   N+ +     +K  P  QK S         SF  C+ L
Sbjct:   45 FKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSNQGVKITPDQQKRS---------SFFRCVLL 207          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAB8A_BOVIN (Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.354e-42
Identity = 85/172 (49.42%), Postives = 118/172 (68.60%), Query Frame = -1
Query:  172 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKASCCST*SFVLSFIACICL 687
            FKIRT+E DGK +KLQIWDTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N++ W+  I+ +AS +V K+++GNKCD+ DK+ VS E  +  A + GI FMETSAK ++NVE AF  +  DIK +M  +   N+ +     +K  P  QK S         SF  C+ L
Sbjct:   45 FKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFYTLARDIKAKMDKKLEGNSPQGSNQGVKITPDQQKRS---------SFFRCVLL 207          
The following BLAST results are available for this feature:
BLAST of CX295521 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB8B_DICDI8.352e-4856.69Ras-related protein Rab-8B OS=Dictyostelium discoi... [more]
RB1BV_BETVU2.274e-4554.27Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB... [more]
ARA3_ARATH1.129e-4453.57Ras-related protein ARA-3 OS=Arabidopsis thaliana ... [more]
RAB1C_DICDI1.925e-4463.49Ras-related protein Rab-1C OS=Dictyostelium discoi... [more]
YPTV2_VOLCA5.602e-4455.09GTP-binding protein yptV2 OS=Volvox carteri GN=YPT... [more]
YPT2_SCHPO1.380e-4258.59GTP-binding protein ypt2 OS=Schizosaccharomyces po... [more]
RAB8A_MACFA1.802e-4249.42Ras-related protein Rab-8A OS=Macaca fascicularis ... [more]
RAB8A_HUMAN1.802e-4249.42Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8... [more]
RAB8A_CANFA1.802e-4249.42Ras-related protein Rab-8A OS=Canis familiaris GN=... [more]
RAB8A_BOVIN2.354e-4249.42Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A ... [more]

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Properties
Property NameValue
Genbank descriptionC05073A12SK DroRLeaf1 Citrus clementina cDNA clone C05073A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295521 ID=CX295521; Name=CX295521; organism=Citrus clementina; type=EST; length=687bp
GCCACTATCAAGCAACTCCTCATTTGTACATGCCATATAATAGTAATATA
GACTGAAAGAATTGAAATTTCACAATAACTTACAAAAACTAGTAAAGCAA
TCCGTCATATGATTCATGGGGTAGGAATAGTTTTTCACTGGTTCCTACAA
CGTGATTGAGAAAGCTACCCATAAACAAATGCACGCAATGAAGGATAAGA
CAAACGATTAAGTTGAGCAGCAGCTGGCCTTCTGGTTCACCGGTTGTCCT
TTTATCTGCACAGTTGGTGGCCTTGCATTGTTCATTGCAGGTTGACTTGC
CATCCTGTTCTTAATGTCAGCAGTCATAGCCATAAAAGCTTGTTCCACGT
TCATAGAATCCTTTGCGCTGGTCTCCATGAACGGGATGCCAATTTCATCA
GCAAATGCCTTCGCTGTTTCATAAGAGACAACCTTCTTATCAGTGAGATC
ACACTTGTTTCCAACCAGAAGCTTGTTTACATTTTCACTTGCATAGCGAT
CAATTTCATTCAACCACTGCTTAACGTTGTTGAAGCTCTCTTGGTCTGTA
ACATCATAAACAATGATAATGCCATGTGCTCCACGGTAGTAGCTGCTAGT
GATTGTCCTGAATCGTTCTTGCCCTGCAGTGTCCCAAATTTGGAGTTTTA
CAGTCTTCCCGTCTTGCTCCACTGTGCGAATTTTAAA
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