CX295521

Overview
NameCX295521
Unique NameCX295521
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAS1_DROPS (Ras-like protein 1 OS=Drosophila pseudoobscura pseudoobscura GN=Ras85D PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.838e-17
Identity = 48/119 (40.34%), Postives = 70/119 (58.82%), Query Frame = -1
Query:  310 DGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIK 663
            DG+T  L I DTAGQE +  +   Y R   G ++V+ V   +SF ++  +  +I R   +E V  +LVGNKCDLT   V + E A+  A + GIP++ETSAK  M V+ AF  +  +I+
Sbjct:   47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDLTTWNVKN-EQAREVAKQYGIPYIETSAKTRMGVDDAFYTLVREIR 164          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAS1_DROPE (Ras-like protein 1 OS=Drosophila persimilis GN=Ras85D PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.838e-17
Identity = 48/119 (40.34%), Postives = 70/119 (58.82%), Query Frame = -1
Query:  310 DGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIK 663
            DG+T  L I DTAGQE +  +   Y R   G ++V+ V   +SF ++  +  +I R   +E V  +LVGNKCDLT   V + E A+  A + GIP++ETSAK  M V+ AF  +  +I+
Sbjct:   47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDLTTWNVKN-EQAREVAKQYGIPYIETSAKTRMGVDDAFYTLVREIR 164          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RASU_DICDI (Ras-like protein rasU OS=Dictyostelium discoideum GN=rasU PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.624e-17
Identity = 40/110 (36.36%), Postives = 67/110 (60.91%), Query Frame = -1
Query:  334 DGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAF 663
            D +   L I DTAGQ+    I + + +   G I+VY VT + SF+ ++ +L++I    SE V  +++ NK DL D++ V+Y+  + FA+  G+ FME SAK  +N+++ F
Sbjct:   58 DDQVYMLDILDTAGQDELNAIRNHWIKSCEGFILVYSVTSRSSFDQIQSFLDQIKFLKSEKVPIIMIANKSDLDDERQVTYQEGENFANRFGMSFMEVSAKYKLNIDEVF 167          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAP2A_PONAB (Ras-related protein Rap-2a OS=Pongo abelii GN=RAP2A PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 7.624e-17
Identity = 53/136 (38.97%), Postives = 78/136 (57.35%), Query Frame = -1
Query:  289 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRM--ASQP 687
            F  + +E D     L+I DTAG E+F ++   Y +   G I+VY + +Q+SF ++K   ++I R    E V  +LVGNK DL  ++ VS    +A A+E G PFMETSAK    V++ F    A+I  +M  A+QP
Sbjct:   39 FYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSNEGRALAEEWGCPFMETSAKSKTMVDELF----AEIVRQMNYAAQP 170          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAP2A_MOUSE (Ras-related protein Rap-2a OS=Mus musculus GN=Rap2a PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 7.624e-17
Identity = 53/136 (38.97%), Postives = 78/136 (57.35%), Query Frame = -1
Query:  289 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRM--ASQP 687
            F  + +E D     L+I DTAG E+F ++   Y +   G I+VY + +Q+SF ++K   ++I R    E V  +LVGNK DL  ++ VS    +A A+E G PFMETSAK    V++ F    A+I  +M  A+QP
Sbjct:   39 FYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSNEGRALAEEWGCPFMETSAKSKTMVDELF----AEIVRQMNYAAQP 170          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAP2A_HUMAN (Ras-related protein Rap-2a OS=Homo sapiens GN=RAP2A PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.624e-17
Identity = 53/136 (38.97%), Postives = 78/136 (57.35%), Query Frame = -1
Query:  289 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRM--ASQP 687
            F  + +E D     L+I DTAG E+F ++   Y +   G I+VY + +Q+SF ++K   ++I R    E V  +LVGNK DL  ++ VS    +A A+E G PFMETSAK    V++ F    A+I  +M  A+QP
Sbjct:   39 FYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELF----AEIVRQMNYAAQP 170          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: LET60_CAEEL (Ras protein let-60 OS=Caenorhabditis elegans GN=let-60 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.624e-17
Identity = 47/119 (39.50%), Postives = 70/119 (58.82%), Query Frame = -1
Query:  310 DGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIK 663
            DG+T  L I DTAGQE +  +   Y R   G ++V+ V + +SF NV  +  +I R   S++V  +LVGNKCDL+ +  V + T    A   GIP ++TSAK  M V++AF  +  +I+
Sbjct:   47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNEAKSFENVANYREQIRRVKDSDDVPMVLVGNKCDLSSRS-VDFRTVSETAKGYGIPNVDTSAKTRMGVDEAFYTLVREIR 164          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: YPT53_YEAST (GTP-binding protein YPT53 OS=Saccharomyces cerevisiae GN=YPT53 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.958e-17
Identity = 41/127 (32.28%), Postives = 66/127 (51.97%), Query Frame = -1
Query:  325 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL------TDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAM 687
            F  + + +DGK +K +IWDTAGQERF  +   YYR A   ++V+DVT++ SF   + W+ E+      ++   LVGNK DL       + + +     +   +   + + E SAK   N+ Q F  +
Sbjct:   49 FLTKRITRDGKVIKFEIWDTAGQERFAPLAPMYYRNAQAALVVFDVTNEGSFYKAQNWVEELHEKVGHDIVIALVGNKMDLLNNDDENENRAMKAPAVQNLCERENLLYFEASAKTGENIYQIFQTL 175          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAB24_MOUSE (Ras-related protein Rab-24 OS=Mus musculus GN=Rab24 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 9.958e-17
Identity = 54/156 (34.62%), Postives = 77/156 (49.36%), Query Frame = -1
Query:  217 KTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTD----KKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKA-----SCC 657
            +TV L IWDTAG ER+  ++  YYRGA   I+ YD+TD  SF   K W+ E+ R   E     L G K DL +    ++ V +   + +AD I     ETS+K   +V++ F  +  D  +  A Q    +        KG  ++QKA     SCC
Sbjct:   55 RTVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKEL-RSLEEGCQIYLCGTKSDLLEEDRRRRRVDFHDVQDYADNIKAQLFETSSKTGQSVDELFQKVAEDYVSVAAFQVMTED--------KGVDLSQKANPYFYSCC 201          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: YPT52_YEAST (GTP-binding protein YPT52 OS=Saccharomyces cerevisiae GN=YPT52 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.301e-16
Identity = 49/175 (28.00%), Postives = 85/175 (48.57%), Query Frame = -1
Query:  214 VKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI-DRYASENVNKLLVGNKCDLTDK--------------------KVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAM--------TADIKNRMASQPAMNNARPPTVQIKGQPVNQKASCCS 651
            +K +IWDTAGQER++++   YYR A+  ++VYD+T ++S    + W++E+ ++   +++   L+GNK DL  +                    + +S E AK +A E G+ F E SAK    V++ F  +          +I ++   Q    N     + ++    N   SCCS
Sbjct:   60 IKFEIWDTAGQERYKSLAPMYYRNANAALVVYDITQEDSLQKARNWVDELKNKVGDDDLVIYLLGNKVDLCQETPSTETSPDSNEGGDEEQKVRAISTEEAKQYAQEQGLLFREVSAKTGEGVKEIFQDIGEKLYDLKKDEILSKQNRQIGGGNNGQVDINLQRPSTNDPTSCCS 234          
The following BLAST results are available for this feature:
BLAST of CX295521 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAS1_DROPS5.838e-1740.34Ras-like protein 1 OS=Drosophila pseudoobscura pse... [more]
RAS1_DROPE5.838e-1740.34Ras-like protein 1 OS=Drosophila persimilis GN=Ras... [more]
RASU_DICDI7.624e-1736.36Ras-like protein rasU OS=Dictyostelium discoideum ... [more]
RAP2A_PONAB7.624e-1738.97Ras-related protein Rap-2a OS=Pongo abelii GN=RAP2... [more]
RAP2A_MOUSE7.624e-1738.97Ras-related protein Rap-2a OS=Mus musculus GN=Rap2... [more]
RAP2A_HUMAN7.624e-1738.97Ras-related protein Rap-2a OS=Homo sapiens GN=RAP2... [more]
LET60_CAEEL7.624e-1739.50Ras protein let-60 OS=Caenorhabditis elegans GN=le... [more]
YPT53_YEAST9.958e-1732.28GTP-binding protein YPT53 OS=Saccharomyces cerevis... [more]
RAB24_MOUSE9.958e-1734.62Ras-related protein Rab-24 OS=Mus musculus GN=Rab2... [more]
YPT52_YEAST1.301e-1628.00GTP-binding protein YPT52 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionC05073A12SK DroRLeaf1 Citrus clementina cDNA clone C05073A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295521 ID=CX295521; Name=CX295521; organism=Citrus clementina; type=EST; length=687bp
GCCACTATCAAGCAACTCCTCATTTGTACATGCCATATAATAGTAATATA
GACTGAAAGAATTGAAATTTCACAATAACTTACAAAAACTAGTAAAGCAA
TCCGTCATATGATTCATGGGGTAGGAATAGTTTTTCACTGGTTCCTACAA
CGTGATTGAGAAAGCTACCCATAAACAAATGCACGCAATGAAGGATAAGA
CAAACGATTAAGTTGAGCAGCAGCTGGCCTTCTGGTTCACCGGTTGTCCT
TTTATCTGCACAGTTGGTGGCCTTGCATTGTTCATTGCAGGTTGACTTGC
CATCCTGTTCTTAATGTCAGCAGTCATAGCCATAAAAGCTTGTTCCACGT
TCATAGAATCCTTTGCGCTGGTCTCCATGAACGGGATGCCAATTTCATCA
GCAAATGCCTTCGCTGTTTCATAAGAGACAACCTTCTTATCAGTGAGATC
ACACTTGTTTCCAACCAGAAGCTTGTTTACATTTTCACTTGCATAGCGAT
CAATTTCATTCAACCACTGCTTAACGTTGTTGAAGCTCTCTTGGTCTGTA
ACATCATAAACAATGATAATGCCATGTGCTCCACGGTAGTAGCTGCTAGT
GATTGTCCTGAATCGTTCTTGCCCTGCAGTGTCCCAAATTTGGAGTTTTA
CAGTCTTCCCGTCTTGCTCCACTGTGCGAATTTTAAA
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