CX295521

Overview
NameCX295521
Unique NameCX295521
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RABL_MIMIV (Probable Rab-related GTPase OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R214 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.699e-16
Identity = 48/120 (40.00%), Postives = 71/120 (59.17%), Query Frame = -1
Query:  325 RTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKK--VVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAM 678
            + + ++GKT+KL IWDTAGQERFR+IT  YY  + G ++V+DVTD+ESF++V  W+N++          L+V NK D+ DK    VS    K F  +    ++  S+ +S  V   F  M
Sbjct:   54 QVIAKNGKTLKLNIWDTAGQERFRSITKMYYTNSLGCLVVFDVTDRESFDDVYYWINDLRINCHTTYYILVVANKIDI-DKNNWRVSENEIKKFCRDNDCDYVFASSFESDTVNNLFGKM 172          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RYL2_YARLI (Ras-like GTP-binding protein RYL2 OS=Yarrowia lipolytica GN=RYL2 PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.218e-16
Identity = 60/168 (35.71%), Postives = 86/168 (51.19%), Query Frame = -1
Query:  217 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT----DKKVVSYETAKAFADE---IGIPFMETSAKDSMNVEQAF-MAMTADIKNRMASQPAMNNA---RPPTVQIKGQPVNQKASCC 687
            F  + V  +  TV+LQIWDTAGQERFR++   YYR A   I+ YDVT + SF+ +  WL E+ +  S ++   +VG K DL       + V +E    +A E         E SAKD   VE+ F + +T  +  R A +   +N+   R   V +      QK+SCC
Sbjct:   42 FSRKRVVVNDTTVRLQIWDTAGQERFRSMAPIYYRSASCGILCYDVTSRASFDAMHLWLLELKQNLSSDIIIHIVGTKVDLVKDEPSLREVPFEQCVEYASEWLQDDSCCHEISAKDDEGVEEVFEVIITKLLDKREADEQQKHNSQRQRQSVVYLHTDEDEQKSSCC 209          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAS_CARAU (Ras-like protein (Fragment) OS=Carassius auratus PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.218e-16
Identity = 47/119 (39.50%), Postives = 68/119 (57.14%), Query Frame = -1
Query:  310 DGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIK 663
            DG+T  L I DTAGQE +  +   Y R   G + V+ + + +SF ++  +  +I R   SE+V  +LVGNKCDL  +  V  + A+  A   GIPF+ETSAK    VE AF  +  +I+
Sbjct:   47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRS-VDTKQAQDLARSYGIPFIETSAKTRQRVEDAFYTLVREIR 164          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RASL_COLTR (Ras-like protein OS=Colletotrichum trifolii GN=RAS PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.218e-16
Identity = 48/158 (30.38%), Postives = 78/158 (49.37%), Query Frame = -1
Query:  214 DGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLV-GNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPV-------NQKASCCS 663
            D +   L + DTAGQE +  +   Y R   G ++VY +T ++SF  +  +  +I R   ++   ++V GNKCDL  ++ V+ +  +A A   G  F+ETSAK  +NV++AF  +  +I+         +        I G P         Q+A CCS
Sbjct:   52 DEEVALLDVLDTAGQEEYSAMREQYMRTGEGFLLVYSITSRQSFEEITTFQQQILRVKDKDYFPMVVVGNKCDLEGEREVTRQEGEALAKSFGCKFIETSAKSRINVDKAFYDIVREIRRYNREMQGYSTGSGGASGINGPPKPMDVENGEQEAGCCS 209          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RASG_DICDI (Ras-like protein rasG OS=Dictyostelium discoideum GN=rasG PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.218e-16
Identity = 48/141 (34.04%), Postives = 76/141 (53.90%), Query Frame = -1
Query:  265 RTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASEN-VNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMA--SQPAMNNARPP 678
            + V  D +T  L I DTAGQE +  +   Y R   G + VY +T + SF+ +  +  +I R   ++ V  ++VGNKCDL   + V+    +  A   G PF+ETSAK  +NVE+AF ++  +I+  +   S+P     + P
Sbjct:   42 KQVTIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFDEIASFREQILRVKDKDRVPMIVVGNKCDLESDRQVTTGEGQDLAKSFGSPFLETSAKIRVNVEEAFYSLVREIRKDLKGDSKPEKGKKKRP 182          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAS2_PHYPO (Ras-like protein 2 OS=Physarum polycephalum GN=RAS-2 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.218e-16
Identity = 43/122 (35.25%), Postives = 68/122 (55.74%), Query Frame = -1
Query:  301 DGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASEN-VNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRM 663
            D +T  L I DTAGQE +  +   Y R   G ++VY +T + SF+ +  +  +I R   ++ V  +L GNKCDL  ++ V+    +  A   G PF+ETSAK  +NVE+ F  +  +I+  +
Sbjct:   49 DEETCLLDILDTAGQEEYSAMRDQYMRTGQGFVMVYSITSRSSFDEINAFREQILRVKDKDTVPMVLAGNKCDLASERQVTTNEGQELARAFGCPFVETSAKARLNVEECFYGLVREIRKEV 170          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAS1_PHYPO (Ras-like protein 1 OS=Physarum polycephalum GN=RAS1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.218e-16
Identity = 45/124 (36.29%), Postives = 70/124 (56.45%), Query Frame = -1
Query:  310 RTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASEN-VNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIK 678
            + V  D +T  L I DTAGQE +  +   Y R   G + VY +T + SF+ +  +  +I R   ++ V  ++VGNKCDL  ++ V+    +  A   G PFMETSAK  +NVE++F  +  +I+
Sbjct:   42 KQVTIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFDEIASFREQILRVKDKDKVPMIVVGNKCDLEGERQVTTGEGQDLARSFGCPFMETSAKSRVNVEESFYQLVREIR 165          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAS1_DROWI (Ras-like protein 1 OS=Drosophila willistoni GN=Ras85D PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.218e-16
Identity = 47/119 (39.50%), Postives = 69/119 (57.98%), Query Frame = -1
Query:  310 DGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIK 663
            DG+T  L I DTAGQE +  +   Y R   G ++V+ V   +SF ++  +  +I R   +E V  +LVGNKCDL    V + E A+  A + GIP++ETSAK  M V+ AF  +  +I+
Sbjct:   47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDLPSWNVQN-EQAREVAKQYGIPYIETSAKTRMGVDDAFYTLVREIR 164          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAS1_DROGR (Ras-like protein 1 OS=Drosophila grimshawi GN=Ras85D PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.218e-16
Identity = 47/119 (39.50%), Postives = 69/119 (57.98%), Query Frame = -1
Query:  310 DGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIK 663
            DG+T  L I DTAGQE +  +   Y R   G ++V+ V   +SF ++  +  +I R   +E V  +LVGNKCDL    V + E A+  A + GIP++ETSAK  M V+ AF  +  +I+
Sbjct:   47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDLPSWNVQN-EQAREVAKQYGIPYIETSAKTRMGVDDAFYTLVREIR 164          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RASH_MSVHA (Transforming protein p29 OS=Harvey murine sarcoma virus GN=H-RAS PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.897e-16
Identity = 49/134 (36.57%), Postives = 73/134 (54.48%), Query Frame = -1
Query:  265 DGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPP 663
            DG+T  L I DT GQE +  +   Y R   G + V+ + + +SF ++ Q+  +I R   S++V  +LVGNKCDL  + V S + A+  A   GIP++ETSAK    VE AF  +  +I+     Q  +    PP
Sbjct:   99 DGETCLLDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAGRTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR-----QHKLRKLNPP 226          
The following BLAST results are available for this feature:
BLAST of CX295521 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RABL_MIMIV1.699e-1640.00Probable Rab-related GTPase OS=Acanthamoeba polyph... [more]
RYL2_YARLI2.218e-1635.71Ras-like GTP-binding protein RYL2 OS=Yarrowia lipo... [more]
RAS_CARAU2.218e-1639.50Ras-like protein (Fragment) OS=Carassius auratus P... [more]
RASL_COLTR2.218e-1630.38Ras-like protein OS=Colletotrichum trifolii GN=RAS... [more]
RASG_DICDI2.218e-1634.04Ras-like protein rasG OS=Dictyostelium discoideum ... [more]
RAS2_PHYPO2.218e-1635.25Ras-like protein 2 OS=Physarum polycephalum GN=RAS... [more]
RAS1_PHYPO2.218e-1636.29Ras-like protein 1 OS=Physarum polycephalum GN=RAS... [more]
RAS1_DROWI2.218e-1639.50Ras-like protein 1 OS=Drosophila willistoni GN=Ras... [more]
RAS1_DROGR2.218e-1639.50Ras-like protein 1 OS=Drosophila grimshawi GN=Ras8... [more]
RASH_MSVHA2.897e-1636.57Transforming protein p29 OS=Harvey murine sarcoma ... [more]

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Properties
Property NameValue
Genbank descriptionC05073A12SK DroRLeaf1 Citrus clementina cDNA clone C05073A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295521 ID=CX295521; Name=CX295521; organism=Citrus clementina; type=EST; length=687bp
GCCACTATCAAGCAACTCCTCATTTGTACATGCCATATAATAGTAATATA
GACTGAAAGAATTGAAATTTCACAATAACTTACAAAAACTAGTAAAGCAA
TCCGTCATATGATTCATGGGGTAGGAATAGTTTTTCACTGGTTCCTACAA
CGTGATTGAGAAAGCTACCCATAAACAAATGCACGCAATGAAGGATAAGA
CAAACGATTAAGTTGAGCAGCAGCTGGCCTTCTGGTTCACCGGTTGTCCT
TTTATCTGCACAGTTGGTGGCCTTGCATTGTTCATTGCAGGTTGACTTGC
CATCCTGTTCTTAATGTCAGCAGTCATAGCCATAAAAGCTTGTTCCACGT
TCATAGAATCCTTTGCGCTGGTCTCCATGAACGGGATGCCAATTTCATCA
GCAAATGCCTTCGCTGTTTCATAAGAGACAACCTTCTTATCAGTGAGATC
ACACTTGTTTCCAACCAGAAGCTTGTTTACATTTTCACTTGCATAGCGAT
CAATTTCATTCAACCACTGCTTAACGTTGTTGAAGCTCTCTTGGTCTGTA
ACATCATAAACAATGATAATGCCATGTGCTCCACGGTAGTAGCTGCTAGT
GATTGTCCTGAATCGTTCTTGCCCTGCAGTGTCCCAAATTTGGAGTTTTA
CAGTCTTCCCGTCTTGCTCCACTGTGCGAATTTTAAA
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