CX295521

Overview
NameCX295521
Unique NameCX295521
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RASH_RRASV (Transforming protein p29 OS=Rasheed rat sarcoma virus GN=RAS PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.942e-16
Identity = 50/134 (37.31%), Postives = 73/134 (54.48%), Query Frame = -1
Query:  265 DGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPP 663
            DG+T  L I DTAGQE +  +   Y R   G + V+ + + +SF ++ Q+  +I R   S++V  +LVGNKCDL    V S + A+  A   GIP++ETSAK    VE AF  +  +I+     Q  +    PP
Sbjct:  106 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAAHTVESRQ-AQDLARSYGIPYIETSAKTRPGVEDAFYTLVREIR-----QHKLRKLNPP 233          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RASH_MOUSE (GTPase HRas OS=Mus musculus GN=Hras1 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.942e-16
Identity = 49/134 (36.57%), Postives = 73/134 (54.48%), Query Frame = -1
Query:  265 DGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPP 663
            DG+T  L   DTAGQE +  +   Y R   G + V+ + + +SF ++ Q+  +I R   S++V  +LVGNKCDL  + V S + A+  A   GIP++ETSAK    VE AF  +  +I+     Q  +    PP
Sbjct:   47 DGETCLLDYLDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR-----QHKLRKLNPP 174          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAB38_HUMAN (Ras-related protein Rab-38 OS=Homo sapiens GN=RAB38 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.942e-16
Identity = 58/166 (34.94%), Postives = 94/166 (56.63%), Query Frame = -1
Query:  214 FKIRTVEQDGKTV-KLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----ENVNKLLVGNKCDLTDKKVVSYETAK--AFADEIG-IPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKASCCS 687
            F ++ +  D +TV +LQ+WD AGQERF  +T  YYR A G  IV+DVT   +F  V +W N++D   S    + V+ +L+ NKCD   K V+     K   F  E G + + ETSAK+++N+++A   +   +K+ +A++  +  +  P V +K    + K + CS
Sbjct:   46 FALKVLHWDPETVVRLQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLSLPNGKPVSVVLLANKCD-QGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCL---VKHILANECDLMESIEPDV-VKPHLTSTKVASCS 206          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RASN_RAT (GTPase NRas OS=Rattus norvegicus GN=Nras PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.454e-16
Identity = 51/142 (35.92%), Postives = 74/142 (52.11%), Query Frame = -1
Query:  241 DGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQP 663
            DG+T  L I DTAGQE +  +   Y R   G + V+ + + +SF ++  +  +I R   S++V  +LVGNKCDL   + V  + A   A   GIPF+ETSAK    VE AF  +  +I  R      +N++   T    G P
Sbjct:   47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL-PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREI--RQYRMKKLNSSEDGTQGCMGLP 185          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RASN_PONAB (GTPase NRas OS=Pongo abelii GN=NRAS PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.454e-16
Identity = 46/119 (38.66%), Postives = 68/119 (57.14%), Query Frame = -1
Query:  310 DGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIK 663
            DG+T  L I DTAGQE +  +   Y R   G++ V+ + + +SF ++  +  +I R   S++V  +LVGNKCDL   + V  + A   A   GIPF+ETSAK    VE AF  +  +I+
Sbjct:   47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGLLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL-PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIR 164          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RASN_CHICK (GTPase NRas OS=Gallus gallus GN=NRAS PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.454e-16
Identity = 46/119 (38.66%), Postives = 68/119 (57.14%), Query Frame = -1
Query:  310 DGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIK 663
            DG+T  L I DTAGQE +  +   Y R   G + V+ + + +SF ++  +  +I R   S++V  +LVGNKCDL   + V  + A+  A   GIPF+ETSAK    VE AF  +  +I+
Sbjct:   47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL-PTRTVDTKQAQELAKSYGIPFIETSAKTRQGVEDAFYTLVREIR 164          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RASN_XENLA (GTPase NRas OS=Xenopus laevis GN=nras PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.430e-16
Identity = 46/118 (38.98%), Postives = 67/118 (56.78%), Query Frame = -1
Query:  313 DGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADI 663
            DG+T  L I DTAGQE +  +   Y R   G + V+ + + +SF ++  +  +I R   S++V  +LVGNKCDL   + V  + A+  A   GIPF+ETSAK    VE AF  +  +I
Sbjct:   47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINAYREQIKRVKDSDDVPMVLVGNKCDL-PSRTVDTKQAQELARSYGIPFIETSAKTRQGVEDAFYTLVREI 163          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RASN_MOUSE (GTPase NRas OS=Mus musculus GN=Nras PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.430e-16
Identity = 50/142 (35.21%), Postives = 75/142 (52.82%), Query Frame = -1
Query:  241 DGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQP 663
            DG+T  L I DTAGQE +  +   Y R   G + V+ + + +SF ++  +  +I R   S++V  +LVGNKCDL   + V  + A   A   GIPF+ETSAK    VE AF  +  +I+     +  +N++   T    G P
Sbjct:   47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL-PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRLKK--LNSSDDGTQGCMGSP 185          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RASN_PIG (GTPase NRas OS=Sus scrofa GN=NRAS PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.101e-15
Identity = 46/119 (38.66%), Postives = 67/119 (56.30%), Query Frame = -1
Query:  310 DGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIK 663
            DG+T  L I DTAGQE +  +   Y R   G + V+ + + +SF ++  +  +I R   S++V  +LVGNKCDL   + V  + A   A   GIPF+ETSAK    VE AF  +  +I+
Sbjct:   47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL-PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIR 164          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RASN_MONDO (GTPase NRas OS=Monodelphis domestica GN=NRAS PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.101e-15
Identity = 46/119 (38.66%), Postives = 67/119 (56.30%), Query Frame = -1
Query:  310 DGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIK 663
            DG+T  L I DTAGQE +  +   Y R   G + V+ + + +SF ++  +  +I R   S++V  +LVGNKCDL   + V  + A   A   GIPF+ETSAK    VE AF  +  +I+
Sbjct:   47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL-PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIR 164          
The following BLAST results are available for this feature:
BLAST of CX295521 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RASH_RRASV4.942e-1637.31Transforming protein p29 OS=Rasheed rat sarcoma vi... [more]
RASH_MOUSE4.942e-1636.57GTPase HRas OS=Mus musculus GN=Hras1 PE=1 SV=1[more]
RAB38_HUMAN4.942e-1634.94Ras-related protein Rab-38 OS=Homo sapiens GN=RAB3... [more]
RASN_RAT6.454e-1635.92GTPase NRas OS=Rattus norvegicus GN=Nras PE=2 SV=1[more]
RASN_PONAB6.454e-1638.66GTPase NRas OS=Pongo abelii GN=NRAS PE=2 SV=1[more]
RASN_CHICK6.454e-1638.66GTPase NRas OS=Gallus gallus GN=NRAS PE=2 SV=1[more]
RASN_XENLA8.430e-1638.98GTPase NRas OS=Xenopus laevis GN=nras PE=2 SV=1[more]
RASN_MOUSE8.430e-1635.21GTPase NRas OS=Mus musculus GN=Nras PE=2 SV=1[more]
RASN_PIG1.101e-1538.66GTPase NRas OS=Sus scrofa GN=NRAS PE=2 SV=1[more]
RASN_MONDO1.101e-1538.66GTPase NRas OS=Monodelphis domestica GN=NRAS PE=2 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05073A12SK DroRLeaf1 Citrus clementina cDNA clone C05073A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295521 ID=CX295521; Name=CX295521; organism=Citrus clementina; type=EST; length=687bp
GCCACTATCAAGCAACTCCTCATTTGTACATGCCATATAATAGTAATATA
GACTGAAAGAATTGAAATTTCACAATAACTTACAAAAACTAGTAAAGCAA
TCCGTCATATGATTCATGGGGTAGGAATAGTTTTTCACTGGTTCCTACAA
CGTGATTGAGAAAGCTACCCATAAACAAATGCACGCAATGAAGGATAAGA
CAAACGATTAAGTTGAGCAGCAGCTGGCCTTCTGGTTCACCGGTTGTCCT
TTTATCTGCACAGTTGGTGGCCTTGCATTGTTCATTGCAGGTTGACTTGC
CATCCTGTTCTTAATGTCAGCAGTCATAGCCATAAAAGCTTGTTCCACGT
TCATAGAATCCTTTGCGCTGGTCTCCATGAACGGGATGCCAATTTCATCA
GCAAATGCCTTCGCTGTTTCATAAGAGACAACCTTCTTATCAGTGAGATC
ACACTTGTTTCCAACCAGAAGCTTGTTTACATTTTCACTTGCATAGCGAT
CAATTTCATTCAACCACTGCTTAACGTTGTTGAAGCTCTCTTGGTCTGTA
ACATCATAAACAATGATAATGCCATGTGCTCCACGGTAGTAGCTGCTAGT
GATTGTCCTGAATCGTTCTTGCCCTGCAGTGTCCCAAATTTGGAGTTTTA
CAGTCTTCCCGTCTTGCTCCACTGTGCGAATTTTAAA
back to top