CX295521

Overview
NameCX295521
Unique NameCX295521
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RASN_HUMAN (GTPase NRas OS=Homo sapiens GN=NRAS PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.101e-15
Identity = 46/119 (38.66%), Postives = 67/119 (56.30%), Query Frame = -1
Query:  310 DGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIK 663
            DG+T  L I DTAGQE +  +   Y R   G + V+ + + +SF ++  +  +I R   S++V  +LVGNKCDL   + V  + A   A   GIPF+ETSAK    VE AF  +  +I+
Sbjct:   47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL-PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIR 164          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RASN_CAVPO (GTPase NRas OS=Cavia porcellus GN=NRAS PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.101e-15
Identity = 46/119 (38.66%), Postives = 67/119 (56.30%), Query Frame = -1
Query:  310 DGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIK 663
            DG+T  L I DTAGQE +  +   Y R   G + V+ + + +SF ++  +  +I R   S++V  +LVGNKCDL   + V  + A   A   GIPF+ETSAK    VE AF  +  +I+
Sbjct:   47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL-PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIR 164          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAS3_RHIRA (Ras-like protein 3 OS=Rhizomucor racemosus GN=RAS3 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.438e-15
Identity = 43/125 (34.40%), Postives = 64/125 (51.20%), Query Frame = -1
Query:  292 DGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQ 663
            D +T  L + DTAGQE +  +   Y R   G ++VY +T + SF  V  +  +I R    ++   +LVGNKCDL   + VS +  +  A   G PF ETSAK  + V+  F  +  +I+     Q
Sbjct:   53 DDETALLDVLDTAGQEEYSAMREQYMRNGEGFVLVYSITSRLSFEEVNTFYQQIRRVKDRDSFPMVLVGNKCDLEGDRQVSSQEGRDLAKSFGCPFSETSAKQRIRVDDTFYEVVREIRRMNKEQ 177          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAP2C_MOUSE (Ras-related protein Rap-2c OS=Mus musculus GN=Rap2c PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.438e-15
Identity = 46/119 (38.66%), Postives = 67/119 (56.30%), Query Frame = -1
Query:  334 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAF 687
            F  + +E D     L+I DTAG E+F ++   Y +   G I+VY + +Q+SF ++K   ++I R    E V  +LVGNK DL  ++ V     +A A E G PFMETSAK    V++ F
Sbjct:   39 FYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIVRVKRYEKVPLILVGNKVDLEPEREVMSSEGRALAQEWGCPFMETSAKSKSMVDELF 157          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAP2C_HUMAN (Ras-related protein Rap-2c OS=Homo sapiens GN=RAP2C PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.438e-15
Identity = 46/119 (38.66%), Postives = 67/119 (56.30%), Query Frame = -1
Query:  334 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAF 687
            F  + +E D     L+I DTAG E+F ++   Y +   G I+VY + +Q+SF ++K   ++I R    E V  +LVGNK DL  ++ V     +A A E G PFMETSAK    V++ F
Sbjct:   39 FYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIVRVKRYEKVPLILVGNKVDLEPEREVMSSEGRALAQEWGCPFMETSAKSKSMVDELF 157          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAP2C_BOVIN (Ras-related protein Rap-2c OS=Bos taurus GN=RAP2C PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.438e-15
Identity = 46/119 (38.66%), Postives = 67/119 (56.30%), Query Frame = -1
Query:  334 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAF 687
            F  + +E D     L+I DTAG E+F ++   Y +   G I+VY + +Q+SF ++K   ++I R    E V  +LVGNK DL  ++ V     +A A E G PFMETSAK    V++ F
Sbjct:   39 FYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIVRVKRYEKVPLILVGNKVDLEPEREVMSSEGRALAQEWGCPFMETSAKSKSMVDELF 157          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAP1_PHYPO (Ras-related protein Rap-1 OS=Physarum polycephalum GN=RAP1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.438e-15
Identity = 45/127 (35.43%), Postives = 71/127 (55.91%), Query Frame = -1
Query:  304 RTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEI-GIPFMETSAKDSMNVEQAFMAMTADIKNR 678
            + VE DG+   L+I DTAG E+F  +   Y +   G ++VY +    +FN++     +I R    ++V  +LVGNKCDL +++V+S E     A +  G  F+E SAK+ +NVEQ F  +   I  +
Sbjct:   44 KQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSIIAMSTFNDLPDLREQILRVKDCDDVPMVLVGNKCDLAEQRVISTEQGDELARKFGGCAFLEASAKNKINVEQIFYDLIRQINRK 170          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RASB_DICDI (Ras-like protein rasB OS=Dictyostelium discoideum GN=rasB PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.878e-15
Identity = 45/127 (35.43%), Postives = 67/127 (52.76%), Query Frame = -1
Query:  301 RTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRM 678
            R  + D  T  L I DTAGQ+ +  +   Y R   G + VYDVT + SF  +     +I R   ++ V  +LVGNKCDL + + V+       A    +PF+ETSAK  +NV++ F  +  +IK  +
Sbjct:   45 RQCQVDEDTCLLDILDTAGQDDYSAMRDQYMRTGQGFLCVYDVTSRTSFEEINVVREQIIRVKDNDKVPIVLVGNKCDLENLREVTEGEGSELAKSFSVPFLETSAKKRLNVDECFFEVVREIKKSL 171          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAPA_DICDI (Ras-related protein rapA OS=Dictyostelium discoideum GN=rapA PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.878e-15
Identity = 46/127 (36.22%), Postives = 69/127 (54.33%), Query Frame = -1
Query:  304 RTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIG-IPFMETSAKDSMNVEQAFMAMTADIKNR 678
            + VE D     L+I DTAG E+F  +   Y +   G ++VY +    +FN +     +I R    E+V  +LVGNKCDL D++V+S E  +  A + G   F+E SAK+ +NVEQ F  +   I  +
Sbjct:   44 KQVEVDSNQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSIISNSTFNELPDLREQILRVKDCEDVPMVLVGNKCDLHDQRVISTEQGEELARKFGDCYFLEASAKNKVNVEQIFYNLIRQINRK 170          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAB7L_MOUSE (Ras-related protein Rab-7L1 OS=Mus musculus GN=Rab7l1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.878e-15
Identity = 54/162 (33.33%), Postives = 88/162 (54.32%), Query Frame = -1
Query:  217 DGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY----ASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIP-FMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQI--KGQPVNQKA------SCC 663
            D + V+LQ+WD AGQERF ++T  YYR A   +I++DVT+  +F+N ++W  ++D      + E V  LL+ NK DL+    VS +    F+ E G   + ETS K++ N+ +A          R+  +  MNN+R   + +  +G  +N +A      +CC
Sbjct:   53 DSEMVRLQLWDIAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPSGEPVPCLLLANKSDLS-PWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAM---------RVLVEKMMNNSREDVMSLSTQGNYINLQAKPSSGWTCC 204          
The following BLAST results are available for this feature:
BLAST of CX295521 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RASN_HUMAN1.101e-1538.66GTPase NRas OS=Homo sapiens GN=NRAS PE=1 SV=1[more]
RASN_CAVPO1.101e-1538.66GTPase NRas OS=Cavia porcellus GN=NRAS PE=2 SV=1[more]
RAS3_RHIRA1.438e-1534.40Ras-like protein 3 OS=Rhizomucor racemosus GN=RAS3... [more]
RAP2C_MOUSE1.438e-1538.66Ras-related protein Rap-2c OS=Mus musculus GN=Rap2... [more]
RAP2C_HUMAN1.438e-1538.66Ras-related protein Rap-2c OS=Homo sapiens GN=RAP2... [more]
RAP2C_BOVIN1.438e-1538.66Ras-related protein Rap-2c OS=Bos taurus GN=RAP2C ... [more]
RAP1_PHYPO1.438e-1535.43Ras-related protein Rap-1 OS=Physarum polycephalum... [more]
RASB_DICDI1.878e-1535.43Ras-like protein rasB OS=Dictyostelium discoideum ... [more]
RAPA_DICDI1.878e-1536.22Ras-related protein rapA OS=Dictyostelium discoide... [more]
RAB7L_MOUSE1.878e-1533.33Ras-related protein Rab-7L1 OS=Mus musculus GN=Rab... [more]

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Properties
Property NameValue
Genbank descriptionC05073A12SK DroRLeaf1 Citrus clementina cDNA clone C05073A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295521 ID=CX295521; Name=CX295521; organism=Citrus clementina; type=EST; length=687bp
GCCACTATCAAGCAACTCCTCATTTGTACATGCCATATAATAGTAATATA
GACTGAAAGAATTGAAATTTCACAATAACTTACAAAAACTAGTAAAGCAA
TCCGTCATATGATTCATGGGGTAGGAATAGTTTTTCACTGGTTCCTACAA
CGTGATTGAGAAAGCTACCCATAAACAAATGCACGCAATGAAGGATAAGA
CAAACGATTAAGTTGAGCAGCAGCTGGCCTTCTGGTTCACCGGTTGTCCT
TTTATCTGCACAGTTGGTGGCCTTGCATTGTTCATTGCAGGTTGACTTGC
CATCCTGTTCTTAATGTCAGCAGTCATAGCCATAAAAGCTTGTTCCACGT
TCATAGAATCCTTTGCGCTGGTCTCCATGAACGGGATGCCAATTTCATCA
GCAAATGCCTTCGCTGTTTCATAAGAGACAACCTTCTTATCAGTGAGATC
ACACTTGTTTCCAACCAGAAGCTTGTTTACATTTTCACTTGCATAGCGAT
CAATTTCATTCAACCACTGCTTAACGTTGTTGAAGCTCTCTTGGTCTGTA
ACATCATAAACAATGATAATGCCATGTGCTCCACGGTAGTAGCTGCTAGT
GATTGTCCTGAATCGTTCTTGCCCTGCAGTGTCCCAAATTTGGAGTTTTA
CAGTCTTCCCGTCTTGCTCCACTGTGCGAATTTTAAA
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