CX295521

Overview
NameCX295521
Unique NameCX295521
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAB38_MOUSE (Ras-related protein Rab-38 OS=Mus musculus GN=Rab38 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.184e-15
Identity = 56/166 (33.73%), Postives = 93/166 (56.02%), Query Frame = -1
Query:  214 FKIRTVEQDGKTV-KLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----ENVNKLLVGNKCDLTDKKVVSYETAK--AFADEIG-IPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKASCCS 687
            F ++ +  D +TV +LQ+WD AGQERF  +T  YYR A G  IV+DVT   +F  V +W N++D   +    + V+ +L+ NKCD   K V+     K   F  E G + + ETSAK+++N+++A   +   +K+ +A++  +  +  P + +K    + K   CS
Sbjct:   46 FALKVLHWDPETVVRLQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLTLPNGKPVSVVLLANKCD-QGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCL---VKHILANECDLLESIEPDI-VKPHLTSPKVVSCS 206          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAS_SCHPO (Ras-like protein 1 OS=Schizosaccharomyces pombe GN=ras1 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.464e-15
Identity = 46/142 (32.39%), Postives = 76/142 (53.52%), Query Frame = -1
Query:  253 EQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENV-NKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIK--NRMASQPAMNNARPPTVQI 669
            E DG+   L + DTAGQE +  +   Y R   G ++VY++T + SF+ +  +  +I R   ++    +LV NKCDL  ++VVS    +  A  +   ++ETSAK  +NVE+AF ++   I+  N+   +   N     T Q+
Sbjct:   50 EIDGEGALLDVLDTAGQEEYSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQILRVKDKDTFPVVLVANKCDLEAERVVSRAEGEQLAKSMHCLYVETSAKLRLNVEEAFYSLVRTIRRYNKSEEKGFQNKQAVQTAQV 191          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAS2_HYDMA (Ras-like protein RAS2 OS=Hydra magnipapillata GN=RAS2 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.464e-15
Identity = 43/120 (35.83%), Postives = 68/120 (56.67%), Query Frame = -1
Query:  307 DGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKN 663
            D K   L I DTAGQE F  +   Y R   G ++V+ VTD+ SF+ + ++  +I R    E    +LVGNK DL +++ VS   A+    ++ + ++E+SAK  +NV+ AF  +   I+N
Sbjct:   52 DDKVAHLDILDTAGQEEFSAMRDEYMRTGEGFLLVFSVTDRSSFDEIPRFHTQILRVKDIEEFPMILVGNKSDLENERTVSTAEAQELGRKLKVSYLESSAKQRINVDAAFHDLVRAIRN 171          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAP1B_CYPCA (Ras-related protein Rap-1b OS=Cyprinus carpio GN=rap1b PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.464e-15
Identity = 45/127 (35.43%), Postives = 72/127 (56.69%), Query Frame = -1
Query:  304 RTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADE-IGIPFMETSAKDSMNVEQAFMAMTADIKNR 678
            + VE DG+   L+I DTAG E+F  +   Y +   G  +VY +T Q +FN+++    +I R   +++V  +LVGNKCDL D++VV  E  +  A +     F+E+SAK  +NV + F  +   I  +
Sbjct:   42 KQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPIILVGNKCDLEDERVVGKEQGQNLARQWNSCAFLESSAKSKINVNEIFYDLVRQINRK 168          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RB32C_DICDI (Ras-related protein Rab-32C OS=Dictyostelium discoideum GN=rab32C PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 7.136e-15
Identity = 43/119 (36.13%), Postives = 67/119 (56.30%), Query Frame = -1
Query:  337 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDR-YASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGI-PFMETSAKDSMNVEQA 687
            F+ + +E  G+ V LQ+WD AGQERF  +T  Y++ AHG +IV+D T   +F   K W ++ID  + +EN+  +L+ NKCDL        E    F ++     +  TSAK+   + +A
Sbjct:   65 FQQKVLEIMGQKVLLQLWDIAGQERFGHMTRVYFQNAHGAVIVFDATRSGTFLGAKAWKDDIDYCFNNENLPTILLANKCDLLTPPYTFPEDINTFCEQNRFNKYFYTSAKEDTGINEA 183          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RASK_XENLA (GTPase KRas OS=Xenopus laevis GN=kras PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.136e-15
Identity = 45/119 (37.82%), Postives = 67/119 (56.30%), Query Frame = -1
Query:  310 DGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIK 663
            DG+T  L I DTAGQE +  +   Y R   G + V+ + + +SF ++  +  +I R   SE+V  +LVGNKC L   + V  + A+  A   GIPF+ETSAK    V+ AF  +  +I+
Sbjct:   47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNIKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCAL-PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR 164          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAS1_NEUCR (Protein ras-1 OS=Neurospora crassa GN=ras-1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.136e-15
Identity = 49/159 (30.82%), Postives = 80/159 (50.31%), Query Frame = -1
Query:  214 DGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNR--------MASQPAMNNARPPTVQIKGQPVNQKASCCS 663
            D +   L I DTAGQE +  +   Y R   G ++V+ +  +ESF  ++ +  +I R    ++   ++VGNK DL  ++VVS +  +A A E G  ++ETSAK   NVE AF  +  +I+            +  A NN     + +  + V  +A CC+
Sbjct:   52 DNEVALLDILDTAGQEEYSAMREQYMRTGEGFLLVFAINSRESFEEIRIYQQQILRVKDRDSFPMIIVGNKYDLRGERVVSEQEGQALAAEFGTKYIETSAKTQHNVENAFYDLVREIRKEDKKLGEKVGGTSFANNNGAVKQMDVGDEDV--QAGCCA 208          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAB7L_PONAB (Ras-related protein Rab-7L1 OS=Pongo abelii GN=RAB7L1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.136e-15
Identity = 45/118 (38.14%), Postives = 71/118 (60.17%), Query Frame = -1
Query:  325 DGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIP-FMETSAKDSMNVEQAFMAM 663
            D + V+LQ+WD AGQERF ++T  YYR A   +I++DVT+  +F+N ++W  ++D   +    E V  LL+ NKCDL+    VS +    F+ E G   + ETS K++ N+ +A   +
Sbjct:   53 DYEIVRLQLWDIAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLANKCDLS-PWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVL 169          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAB7L_HUMAN (Ras-related protein Rab-7L1 OS=Homo sapiens GN=RAB7L1 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.136e-15
Identity = 45/118 (38.14%), Postives = 71/118 (60.17%), Query Frame = -1
Query:  325 DGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIP-FMETSAKDSMNVEQAFMAM 663
            D + V+LQ+WD AGQERF ++T  YYR A   +I++DVT+  +F+N ++W  ++D   +    E V  LL+ NKCDL+    VS +    F+ E G   + ETS K++ N+ +A   +
Sbjct:   53 DYEIVRLQLWDIAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLANKCDLS-PWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVL 169          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAB34_MOUSE (Ras-related protein Rab-34 OS=Mus musculus GN=Rab34 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 7.136e-15
Identity = 58/170 (34.12%), Postives = 83/170 (48.82%), Query Frame = -1
Query:  217 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNE-IDRYASENVNKLLVGNKCDLTDKKVVSY--ETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTA-DIKNRMASQPAMNNAR--PPTVQIKGQPVN-------QKASCC 687
            F++   E  G    LQ+WDTAGQERF+ I S+YYRGA  IIIV+++ D  S  + KQWL + +      NV   LVG+K DL+     S   + A   A EI   +   S+    NV + F  + A   +  + +    + AR     V+I     N       +KA+CC
Sbjct:   89 FEMERFEVLGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFNLNDVASLEHTKQWLTDALKENDPSNVLLFLVGSKKDLSTPAQYSLMEKDALKVAQEIKAEYWAVSSLTGENVREFFFRVAALTFEANVLADVEKSGARHIADVVRINSDDKNLYLTASKKKATCC 258          
The following BLAST results are available for this feature:
BLAST of CX295521 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB38_MOUSE4.184e-1533.73Ras-related protein Rab-38 OS=Mus musculus GN=Rab3... [more]
RAS_SCHPO5.464e-1532.39Ras-like protein 1 OS=Schizosaccharomyces pombe GN... [more]
RAS2_HYDMA5.464e-1535.83Ras-like protein RAS2 OS=Hydra magnipapillata GN=R... [more]
RAP1B_CYPCA5.464e-1535.43Ras-related protein Rap-1b OS=Cyprinus carpio GN=r... [more]
RB32C_DICDI7.136e-1536.13Ras-related protein Rab-32C OS=Dictyostelium disco... [more]
RASK_XENLA7.136e-1537.82GTPase KRas OS=Xenopus laevis GN=kras PE=2 SV=1[more]
RAS1_NEUCR7.136e-1530.82Protein ras-1 OS=Neurospora crassa GN=ras-1 PE=2 S... [more]
RAB7L_PONAB7.136e-1538.14Ras-related protein Rab-7L1 OS=Pongo abelii GN=RAB... [more]
RAB7L_HUMAN7.136e-1538.14Ras-related protein Rab-7L1 OS=Homo sapiens GN=RAB... [more]
RAB34_MOUSE7.136e-1534.12Ras-related protein Rab-34 OS=Mus musculus GN=Rab3... [more]

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Properties
Property NameValue
Genbank descriptionC05073A12SK DroRLeaf1 Citrus clementina cDNA clone C05073A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295521 ID=CX295521; Name=CX295521; organism=Citrus clementina; type=EST; length=687bp
GCCACTATCAAGCAACTCCTCATTTGTACATGCCATATAATAGTAATATA
GACTGAAAGAATTGAAATTTCACAATAACTTACAAAAACTAGTAAAGCAA
TCCGTCATATGATTCATGGGGTAGGAATAGTTTTTCACTGGTTCCTACAA
CGTGATTGAGAAAGCTACCCATAAACAAATGCACGCAATGAAGGATAAGA
CAAACGATTAAGTTGAGCAGCAGCTGGCCTTCTGGTTCACCGGTTGTCCT
TTTATCTGCACAGTTGGTGGCCTTGCATTGTTCATTGCAGGTTGACTTGC
CATCCTGTTCTTAATGTCAGCAGTCATAGCCATAAAAGCTTGTTCCACGT
TCATAGAATCCTTTGCGCTGGTCTCCATGAACGGGATGCCAATTTCATCA
GCAAATGCCTTCGCTGTTTCATAAGAGACAACCTTCTTATCAGTGAGATC
ACACTTGTTTCCAACCAGAAGCTTGTTTACATTTTCACTTGCATAGCGAT
CAATTTCATTCAACCACTGCTTAACGTTGTTGAAGCTCTCTTGGTCTGTA
ACATCATAAACAATGATAATGCCATGTGCTCCACGGTAGTAGCTGCTAGT
GATTGTCCTGAATCGTTCTTGCCCTGCAGTGTCCCAAATTTGGAGTTTTA
CAGTCTTCCCGTCTTGCTCCACTGTGCGAATTTTAAA
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