CX295521

Overview
NameCX295521
Unique NameCX295521
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAP1B_MACFA (Ras-related protein Rap-1b OS=Macaca fascicularis GN=RAP1B PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.590e-14
Identity = 44/127 (34.65%), Postives = 71/127 (55.91%), Query Frame = -1
Query:  304 RTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADE-IGIPFMETSAKDSMNVEQAFMAMTADIKNR 678
            + VE D +   L+I DTAG E+F  +   Y +   G  +VY +T Q +FN+++    +I R   +++V  +LVGNKCDL D++VV  E  +  A +     F+E+SAK  +NV + F  +   I  +
Sbjct:   42 KQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINRK 168          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAP1B_HUMAN (Ras-related protein Rap-1b OS=Homo sapiens GN=RAP1B PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.590e-14
Identity = 44/127 (34.65%), Postives = 71/127 (55.91%), Query Frame = -1
Query:  304 RTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADE-IGIPFMETSAKDSMNVEQAFMAMTADIKNR 678
            + VE D +   L+I DTAG E+F  +   Y +   G  +VY +T Q +FN+++    +I R   +++V  +LVGNKCDL D++VV  E  +  A +     F+E+SAK  +NV + F  +   I  +
Sbjct:   42 KQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINRK 168          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAP1B_CHICK (Ras-related protein Rap-1b OS=Gallus gallus GN=RAP1B PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.590e-14
Identity = 44/127 (34.65%), Postives = 71/127 (55.91%), Query Frame = -1
Query:  304 RTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADE-IGIPFMETSAKDSMNVEQAFMAMTADIKNR 678
            + VE D +   L+I DTAG E+F  +   Y +   G  +VY +T Q +FN+++    +I R   +++V  +LVGNKCDL D++VV  E  +  A +     F+E+SAK  +NV + F  +   I  +
Sbjct:   42 KQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINRK 168          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAP1B_BOVIN (Ras-related protein Rap-1b OS=Bos taurus GN=RAP1B PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.590e-14
Identity = 44/127 (34.65%), Postives = 71/127 (55.91%), Query Frame = -1
Query:  304 RTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADE-IGIPFMETSAKDSMNVEQAFMAMTADIKNR 678
            + VE D +   L+I DTAG E+F  +   Y +   G  +VY +T Q +FN+++    +I R   +++V  +LVGNKCDL D++VV  E  +  A +     F+E+SAK  +NV + F  +   I  +
Sbjct:   42 KQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINRK 168          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RABL_DICDI (Ras-related protein RabL OS=Dictyostelium discoideum GN=rabL PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.590e-14
Identity = 44/124 (35.48%), Postives = 73/124 (58.87%), Query Frame = -1
Query:  334 IRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL--TDKKVVS---YETAKAFADE---IGIPFMETSAKDSMNVEQAF 681
            I+ ++ + K V L +WDT GQERF+  +  Y+RGA+   + +D+ ++ESF N+ +W++EI +Y   N+  +LVG K D+  TDK +      +  K   D+     + + ETSAK S NV + +
Sbjct:   46 IKELKVENKHVFLMVWDTCGQERFQAFSPPYFRGANCYTLCFDIHNEESFINLGKWMDEIIKYCYGNIPFVLVGTKSDIPRTDKSISKARIEQWCKNIEDQGIIDKVHYFETSAKLSQNVTELY 169          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAB32_HUMAN (Ras-related protein Rab-32 OS=Homo sapiens GN=RAB32 PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.590e-14
Identity = 47/143 (32.87%), Postives = 73/143 (51.05%), Query Frame = -1
Query:  277 FKIRTVEQDGKT-VKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA----SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIP-FMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNN 687
            F ++ +  D +T V+LQ+WD AGQERF  +T  YY+ A G  +V+D++   +F  V +W +++D          +  +L+ NKCD       S      F  E G   + ETSAKD++N+E+A   +   I     S P   N
Sbjct:   62 FALKVLNWDSRTLVRLQLWDIAGQERFGNMTRVYYKEAVGAFVVFDISRSSTFEAVLKWKSDLDSKVHLPNGSPIPAVLLANKCDQNKDSSQSPSQVDQFCKEHGFAGWFETSAKDNINIEEAARFLVEKILVNHQSFPNEEN 204          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RP1BL_HUMAN (Ras-related protein Rap-1b-like protein OS=Homo sapiens PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.076e-14
Identity = 44/125 (35.20%), Postives = 70/125 (56.00%), Query Frame = -1
Query:  304 VEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADE-IGIPFMETSAKDSMNVEQAFMAMTADIKNR 672
            VE D +   L+I DTAG E+F  +   Y +   G  +VY +T Q +FN+++    +I R   +++V  +LVGNKCDL D++VV  E  +  A +     F+E+SAK  +NV + F  +   I  +
Sbjct:   44 VEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINRK 168          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RASV_DICDI (Ras-like protein rasV OS=Dictyostelium discoideum GN=rasV PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.076e-14
Identity = 39/119 (32.77%), Postives = 66/119 (55.46%), Query Frame = -1
Query:  304 KTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNR 657
            K+  L I DTAGQ+    +   + R   G ++VY +T + SFN V  +  +I R    ++V  +++GNK DL +++ V+Y   K  A  +G+ FME SAK+  N+++ F      +K +
Sbjct:   79 KSYILDILDTAGQDELTAMRDQWIRSCEGFVLVYSITCKSSFNQVLNFREQIIRVLDRDDVPIMMIGNKSDLVNERQVTYHEGKELAQRLGMSFMEVSAKNRSNIDEVFHEAVCCVKRK 197          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAPC_DICDI (Ras-related protein rapC OS=Dictyostelium discoideum GN=rapC PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.076e-14
Identity = 41/134 (30.60%), Postives = 74/134 (55.22%), Query Frame = -1
Query:  271 GKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQES---FNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGI-PFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNAR 660
            G+ + L+I DT+G ER+  +   Y R A   ++VY +T + S     N+K ++ ++       +  +++GNKCDL D +VV  E  +A   + GI  F+ETSAK  MN++ A+  +T  + ++ +     +N +
Sbjct:   49 GEHIMLEIMDTSGTERYLAMRDLYIRNAQAFVLVYSITSRVSLLELENIKNYICQVKDRPISQIPMVVLGNKCDLEDTRVVFPEEVEALTKKWGIEDFLETSAKIDMNIQSAYDCLTLQLMSKQSFLNGSSNGK 182          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAB34_RAT (Ras-related protein Rab-34 OS=Rattus norvegicus GN=Rab34 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.076e-14
Identity = 49/126 (38.89%), Postives = 67/126 (53.17%), Query Frame = -1
Query:  319 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWL-NEIDRYASENVNKLLVGNKCDLTDKKVVSY--ETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTA 687
            F++   E  G    LQ+WDTAGQERF+ I S+YYRGA  IIIV+++ D  S  + KQWL + +      NV   LVG+K DL+     S   + A   A EI   +   S+    NV + F  + A
Sbjct:   89 FEMERFEVLGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFNLNDVASLEHSKQWLADALKENDPSNVLLFLVGSKKDLSTPAQYSLMEKDALKVAQEIKAEYWSVSSLTGENVREFFFRVAA 214          
The following BLAST results are available for this feature:
BLAST of CX295521 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAP1B_MACFA1.590e-1434.65Ras-related protein Rap-1b OS=Macaca fascicularis ... [more]
RAP1B_HUMAN1.590e-1434.65Ras-related protein Rap-1b OS=Homo sapiens GN=RAP1... [more]
RAP1B_CHICK1.590e-1434.65Ras-related protein Rap-1b OS=Gallus gallus GN=RAP... [more]
RAP1B_BOVIN1.590e-1434.65Ras-related protein Rap-1b OS=Bos taurus GN=RAP1B ... [more]
RABL_DICDI1.590e-1435.48Ras-related protein RabL OS=Dictyostelium discoide... [more]
RAB32_HUMAN1.590e-1432.87Ras-related protein Rab-32 OS=Homo sapiens GN=RAB3... [more]
RP1BL_HUMAN2.076e-1435.20Ras-related protein Rap-1b-like protein OS=Homo sa... [more]
RASV_DICDI2.076e-1432.77Ras-like protein rasV OS=Dictyostelium discoideum ... [more]
RAPC_DICDI2.076e-1430.60Ras-related protein rapC OS=Dictyostelium discoide... [more]
RAB34_RAT2.076e-1438.89Ras-related protein Rab-34 OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionC05073A12SK DroRLeaf1 Citrus clementina cDNA clone C05073A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295521 ID=CX295521; Name=CX295521; organism=Citrus clementina; type=EST; length=687bp
GCCACTATCAAGCAACTCCTCATTTGTACATGCCATATAATAGTAATATA
GACTGAAAGAATTGAAATTTCACAATAACTTACAAAAACTAGTAAAGCAA
TCCGTCATATGATTCATGGGGTAGGAATAGTTTTTCACTGGTTCCTACAA
CGTGATTGAGAAAGCTACCCATAAACAAATGCACGCAATGAAGGATAAGA
CAAACGATTAAGTTGAGCAGCAGCTGGCCTTCTGGTTCACCGGTTGTCCT
TTTATCTGCACAGTTGGTGGCCTTGCATTGTTCATTGCAGGTTGACTTGC
CATCCTGTTCTTAATGTCAGCAGTCATAGCCATAAAAGCTTGTTCCACGT
TCATAGAATCCTTTGCGCTGGTCTCCATGAACGGGATGCCAATTTCATCA
GCAAATGCCTTCGCTGTTTCATAAGAGACAACCTTCTTATCAGTGAGATC
ACACTTGTTTCCAACCAGAAGCTTGTTTACATTTTCACTTGCATAGCGAT
CAATTTCATTCAACCACTGCTTAACGTTGTTGAAGCTCTCTTGGTCTGTA
ACATCATAAACAATGATAATGCCATGTGCTCCACGGTAGTAGCTGCTAGT
GATTGTCCTGAATCGTTCTTGCCCTGCAGTGTCCCAAATTTGGAGTTTTA
CAGTCTTCCCGTCTTGCTCCACTGTGCGAATTTTAAA
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