CX295521

Overview
NameCX295521
Unique NameCX295521
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9361 contig Ccv1_Contig9361:299..985. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RSR1_YEAST (Ras-related protein RSR1 OS=Saccharomyces cerevisiae GN=RSR1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.712e-14
Identity = 46/143 (32.17%), Postives = 77/143 (53.85%), Query Frame = -1
Query:  256 RTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIG-IPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQ 678
            +T+E D K   L+I DTAG  +F  +   Y +   G ++VY VTD++S   + +   ++ R   S+ V  +L+GNK DL +++V+S E     + + G +PF ETSA    NV++ F+ +   I        A+ +AR  + Q
Sbjct:   42 KTIEIDNKVFDLEILDTAGIAQFTAMRELYIKSGMGFLLVYSVTDRQSLEELMELREQVLRIKDSDRVPMVLIGNKADLINERVISVEEGIEVSSKWGRVPFYETSALLRSNVDEVFVDLVRQIIRNEMESVAVKDARNQSQQ 184          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RRAS_HUMAN (Ras-related protein R-Ras OS=Homo sapiens GN=RRAS PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.712e-14
Identity = 42/119 (35.29%), Postives = 65/119 (54.62%), Query Frame = -1
Query:  310 DGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIK 663
            DG   +L I DTAGQE F  +   Y R  HG ++V+ + D++SFN V +   +I R    ++   +LVGNK DL  ++ V    A AF     + + E SAK  +NV++AF  +   ++
Sbjct:   73 DGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVR 191          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RIT1_MOUSE (GTP-binding protein Rit1 OS=Mus musculus GN=Rit1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.712e-14
Identity = 46/129 (35.66%), Postives = 68/129 (52.71%), Query Frame = -1
Query:  304 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNR 687
            +KIR +  D +   L I DTAGQ  F  +   Y R   G II Y +TD+ SF+ V+++   I R   +++   +LVGNK DL   + VS E   + A E   PF ETSA     ++  F A+  +I+ +
Sbjct:   58 YKIR-IRIDDEPANLDILDTAGQAEFTAMRDQYMRAGEGFIICYSITDRRSFHEVREFKQLIYRVRRTDDTPVVLVGNKSDLKQLRQVSKEEGLSLAREFSCPFFETSAAYRYYIDDVFHALVREIRKK 185          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RIT1_HUMAN (GTP-binding protein Rit1 OS=Homo sapiens GN=RIT1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.712e-14
Identity = 46/129 (35.66%), Postives = 68/129 (52.71%), Query Frame = -1
Query:  304 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNR 687
            +KIR +  D +   L I DTAGQ  F  +   Y R   G II Y +TD+ SF+ V+++   I R   +++   +LVGNK DL   + V+ E   A A E   PF ETSA     ++  F A+  +I+ +
Sbjct:   58 YKIR-IRIDDEPANLDILDTAGQAEFTAMRDQYMRAGEGFIICYSITDRRSFHEVREFKQLIYRVRRTDDTPVVLVGNKSDLKQLRQVTKEEGLALAREFSCPFFETSAAYRYYIDDVFHALVREIRRK 185          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RASN_DANRE (GTPase NRas OS=Danio rerio GN=nras PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.542e-14
Identity = 45/120 (37.50%), Postives = 67/120 (55.83%), Query Frame = -1
Query:  307 DGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKN 663
            DG+T  L I DTAGQE +  +   Y R   G + V+ + + +SF +V  +  +I R   S++V  +LVGN CDL   + V  + A+  A   GI F+ETSAK    VE AF  +  +I++
Sbjct:   47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADVHLYREQIKRVKDSDDVPMVLVGNICDLA--RTVDTKQAQELARSYGIEFVETSAKTRQGVEDAFYTLVREIRH 164          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RASM_HUMAN (Ras-related protein M-Ras OS=Homo sapiens GN=MRAS PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.626e-14
Identity = 47/129 (36.43%), Postives = 72/129 (55.81%), Query Frame = -1
Query:  301 IRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKD-SMNVEQAFMAMTADIKNRM 681
            ++  E D +   L + DTAGQE F  +   Y R   G +IVY VTD+ SF +V ++   I R    E+   +LV NK DL   + ++ E  K  A +  IP++ETSAKD  +NV++AF  +   I+ ++
Sbjct:   51 LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKITREQGKEMATKHNIPYIETSAKDPPLNVDKAFHDLVRVIRQQI 179          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAS2_NEUCR (Protein ras-2 OS=Neurospora crassa GN=ras-2 PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.626e-14
Identity = 46/160 (28.75%), Postives = 75/160 (46.88%), Query Frame = -1
Query:  244 DGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA--------------------SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQ 663
            DG+   L++ DTAGQE +  +   + R   G ++VY ++ + SF  +K++ ++I R                      S  V  +LVGNK D   ++ VS +   A A E+G  F E SAK   NVE+AF  +   ++ +     +   A PP+   K +
Sbjct:   52 DGQACMLEVLDTAGQEEYTALRDQWIRDGEGFVLVYSISSRSSFARIKKFHHQIQRVKESTSSPSAYPGSSPLAATNPSAPVPIMLVGNKSDRVTEREVSTQEGHALARELGCEFTEASAKTRTNVEKAFYDVVKQLRKQRQQGQSTPRALPPSGNSKSE 211          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RABN1_DICDI (Ras-related protein RabN1 OS=Dictyostelium discoideum GN=rabN1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.626e-14
Identity = 49/166 (29.52%), Postives = 86/166 (51.81%), Query Frame = -1
Query:  220 DGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNK--------LLVGNKCDL--TDKKVVSYETAKAFADEI-------GIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNAR-PPTVQIKGQPVNQKASC 663
            D + V    WDTAGQERF ++   +YR A+  ++ +D+ ++ESF N+ +W+ E+     EN  +        +L+G K D+  TDK  +S E  + +   I        + + ETSAK+S N+++ F  ++    N   S   +N ++  PT++I      + +SC
Sbjct:   52 DDELVGYHFWDTAGQERFTSLNRHFYRNANCCVLCFDIHNEESFKNLDKWITELHSKCLENGLESEKLSPPFVLIGTKSDIPRTDKS-ISNERIEQWCKNIEDQRIIDKVHYFETSAKNSKNIKEPFNIISKFALNYFNSMQKLNESKLNPTLEISNNNNIKSSSC 216          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RBL2A_HUMAN (Rab-like protein 2A OS=Homo sapiens GN=RABL2A PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.041e-14
Identity = 41/114 (35.96%), Postives = 64/114 (56.14%), Query Frame = -1
Query:  334 TVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAF 675
            T   DGKT+ +  WDTAGQERF+++ +SYY  AH  I+V+D+  + ++ N+  W  E+  +  E +  ++V NK D  +    S+  AK F+    +P    SA D  NV + F
Sbjct:   62 TATVDGKTILVDFWDTAGQERFQSMHASYYHKAHACIMVFDIQRKVTYRNLSTWYTELREFRPE-IPCIVVANKIDDINVTQKSFNFAKKFS----LPLYFVSAADGTNVVKLF 170          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAB36_HUMAN (Ras-related protein Rab-36 OS=Homo sapiens GN=RAB36 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.041e-14
Identity = 53/167 (31.74%), Postives = 82/167 (49.10%), Query Frame = -1
Query:  223 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNE-IDRYASENVNKLLVGNKCDLTDKKVVSYETAKA--FADEIGIPFMETSAKDSMNVEQAFMAMTA---------DIKNRMASQPAMNNARPPTVQIKGQPVNQKAS 687
            F+I   E  G    LQIWDTAGQE+F+ I S+YYRGA  II  +D+TD ++  + +QWL + +    + +    LVG K DL          A A   A E+   +   SAK   NV+  F  + A         D++ + +++  + N     +Q++G P   + S
Sbjct:  160 FEIERFEIAGIPYSLQIWDTAGQEKFKCIASAYYRGAQVIITAFDLTDVQTLEHTRQWLEDALRENEAGSCFIFLVGTKKDLLSGAACEQAEADAVHLAREMQAEYWSVSAKTGENVKAFFSRVAALAFEQSVLQDLERQSSARLQVGNG--DLIQMEGSPPETQES 324          
The following BLAST results are available for this feature:
BLAST of CX295521 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RSR1_YEAST2.712e-1432.17Ras-related protein RSR1 OS=Saccharomyces cerevisi... [more]
RRAS_HUMAN2.712e-1435.29Ras-related protein R-Ras OS=Homo sapiens GN=RRAS ... [more]
RIT1_MOUSE2.712e-1435.66GTP-binding protein Rit1 OS=Mus musculus GN=Rit1 P... [more]
RIT1_HUMAN2.712e-1435.66GTP-binding protein Rit1 OS=Homo sapiens GN=RIT1 P... [more]
RASN_DANRE3.542e-1437.50GTPase NRas OS=Danio rerio GN=nras PE=2 SV=1[more]
RASM_HUMAN4.626e-1436.43Ras-related protein M-Ras OS=Homo sapiens GN=MRAS ... [more]
RAS2_NEUCR4.626e-1428.75Protein ras-2 OS=Neurospora crassa GN=ras-2 PE=3 S... [more]
RABN1_DICDI4.626e-1429.52Ras-related protein RabN1 OS=Dictyostelium discoid... [more]
RBL2A_HUMAN6.041e-1435.96Rab-like protein 2A OS=Homo sapiens GN=RABL2A PE=2... [more]
RAB36_HUMAN6.041e-1431.74Ras-related protein Rab-36 OS=Homo sapiens GN=RAB3... [more]

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Properties
Property NameValue
Genbank descriptionC05073A12SK DroRLeaf1 Citrus clementina cDNA clone C05073A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295521 ID=CX295521; Name=CX295521; organism=Citrus clementina; type=EST; length=687bp
GCCACTATCAAGCAACTCCTCATTTGTACATGCCATATAATAGTAATATA
GACTGAAAGAATTGAAATTTCACAATAACTTACAAAAACTAGTAAAGCAA
TCCGTCATATGATTCATGGGGTAGGAATAGTTTTTCACTGGTTCCTACAA
CGTGATTGAGAAAGCTACCCATAAACAAATGCACGCAATGAAGGATAAGA
CAAACGATTAAGTTGAGCAGCAGCTGGCCTTCTGGTTCACCGGTTGTCCT
TTTATCTGCACAGTTGGTGGCCTTGCATTGTTCATTGCAGGTTGACTTGC
CATCCTGTTCTTAATGTCAGCAGTCATAGCCATAAAAGCTTGTTCCACGT
TCATAGAATCCTTTGCGCTGGTCTCCATGAACGGGATGCCAATTTCATCA
GCAAATGCCTTCGCTGTTTCATAAGAGACAACCTTCTTATCAGTGAGATC
ACACTTGTTTCCAACCAGAAGCTTGTTTACATTTTCACTTGCATAGCGAT
CAATTTCATTCAACCACTGCTTAACGTTGTTGAAGCTCTCTTGGTCTGTA
ACATCATAAACAATGATAATGCCATGTGCTCCACGGTAGTAGCTGCTAGT
GATTGTCCTGAATCGTTCTTGCCCTGCAGTGTCCCAAATTTGGAGTTTTA
CAGTCTTCCCGTCTTGCTCCACTGTGCGAATTTTAAA
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