CX295521

Overview
NameCX295521
Unique NameCX295521
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9361 contig Ccv1_Contig9361:299..985. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAB3A_PIG (Ras-related protein Rab-3A OS=Sus scrofa GN=RAB3A PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.478e-36
Identity = 74/162 (45.68%), Postives = 110/162 (67.90%), Query Frame = -1
Query:  220 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMA-----SQPAMNNARP-PTVQIKGQPVNQKASC 687
            FK++T+ ++ K +KLQIWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ +N   LLVGNKCD+ D++VVS E  +  AD +G  F E SAKD++NV+Q F  +   I  +M+     + PA+  A+  P +  +  P +Q  +C
Sbjct:   59 FKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTADPAVTGAKQGPQLTDQQAPPHQDCAC 220          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAB3A_MOUSE (Ras-related protein Rab-3A OS=Mus musculus GN=Rab3a PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.478e-36
Identity = 74/162 (45.68%), Postives = 110/162 (67.90%), Query Frame = -1
Query:  220 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMA-----SQPAMNNARP-PTVQIKGQPVNQKASC 687
            FK++T+ ++ K +KLQIWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ +N   LLVGNKCD+ D++VVS E  +  AD +G  F E SAKD++NV+Q F  +   I  +M+     + PA+  A+  P +  +  P +Q  +C
Sbjct:   59 FKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTADPAVTGAKQGPQLTDQQAPPHQDCAC 220          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAB3A_MACFA (Ras-related protein Rab-3A OS=Macaca fascicularis GN=RAB3A PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.478e-36
Identity = 74/162 (45.68%), Postives = 110/162 (67.90%), Query Frame = -1
Query:  220 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMA-----SQPAMNNARP-PTVQIKGQPVNQKASC 687
            FK++T+ ++ K +KLQIWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ +N   LLVGNKCD+ D++VVS E  +  AD +G  F E SAKD++NV+Q F  +   I  +M+     + PA+  A+  P +  +  P +Q  +C
Sbjct:   59 FKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTADPAVTGAKQGPQLSDQQVPPHQDCAC 220          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAB3A_HUMAN (Ras-related protein Rab-3A OS=Homo sapiens GN=RAB3A PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.478e-36
Identity = 74/162 (45.68%), Postives = 110/162 (67.90%), Query Frame = -1
Query:  220 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMA-----SQPAMNNARP-PTVQIKGQPVNQKASC 687
            FK++T+ ++ K +KLQIWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ +N   LLVGNKCD+ D++VVS E  +  AD +G  F E SAKD++NV+Q F  +   I  +M+     + PA+  A+  P +  +  P +Q  +C
Sbjct:   59 FKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTADPAVTGAKQGPQLSDQQVPPHQDCAC 220          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAB3A_BOVIN (Ras-related protein Rab-3A OS=Bos taurus GN=RAB3A PE=1 SV=3)

HSP 1 Score: 152.91 bits (385), Expect = 1.478e-36
Identity = 74/162 (45.68%), Postives = 110/162 (67.90%), Query Frame = -1
Query:  220 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMA-----SQPAMNNARP-PTVQIKGQPVNQKASC 687
            FK++T+ ++ K +KLQIWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ +N   LLVGNKCD+ D++VVS E  +  AD +G  F E SAKD++NV+Q F  +   I  +M+     + PA+  A+  P +  +  P +Q  +C
Sbjct:   59 FKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTADPAVTGAKQGPQLTDQQAPPHQDCAC 220          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAB37_MOUSE (Ras-related protein Rab-37 OS=Mus musculus GN=Rab37 PE=1 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.478e-36
Identity = 75/157 (47.77%), Postives = 106/157 (67.52%), Query Frame = -1
Query:  214 RTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQK--ASCCS 678
            + V  DG  VKLQIWDTAGQERFR++T +YYR A  ++++YD+T+Q SF+N++ WL EI  YA  +V  +L+GNK D++ ++V+  E  +  A E G+PFMETSAK  MNVE AF+A+  ++K R   QP       P+ QI+    +QK  +SCCS
Sbjct:   70 KVVTVDGARVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNQSSFDNIRAWLTEIHEYAQRDVVIMLLGNKADVSSERVIRSEDGETLAREYGVPFMETSAKTGMNVELAFLAIAKELKYRAGRQP-----DEPSFQIRDYVESQKKRSSCCS 221          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: SEC4_YEAST (Ras-related protein SEC4 OS=Saccharomyces cerevisiae GN=SEC4 PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.521e-36
Identity = 75/160 (46.88%), Postives = 111/160 (69.38%), Query Frame = -1
Query:  217 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQP--AMNNARPPTVQI-KGQPVNQKASCC 687
            FKI+TV+ +GK VKLQ+WDTAGQERFRTIT++YYRGA GII+VYDVTD+ +F N+KQW   ++ +A++    LLVGNK D+ + +VV+ +  +A A E+GIPF+E+SAK+  NV + F  +   I+ ++ S     + N +   + I  G   + K++CC
Sbjct:   57 FKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNKLVGVGNGKEGNISINSGSGNSSKSNCC 215          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RABF1_DICDI (Ras-related protein RabF1 OS=Dictyostelium discoideum GN=rabF1-1 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.299e-36
Identity = 73/129 (56.59%), Postives = 98/129 (75.97%), Query Frame = -1
Query:  301 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRM 687
            FKI+TV  +GK +KLQIWDTAG++RFR + +S+YRG HG+IIVYDVTDQ SF NV  W+ +I RYA+ENV K+++GNK DL  +KVV    A+ FAD + IPF E SAK S+N+E+AF+++     NR+
Sbjct:   44 FKIKTVYIEGKPIKLQIWDTAGEKRFR-VHNSHYRGCHGVIIVYDVTDQRSFENVPSWIEDIRRYANENVIKIIIGNKNDLVSQKVVDPFLAQEFADSLDIPFKEISAKQSINIEEAFISLVKLCINRI 171          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAB3_DROME (Ras-related protein Rab-3 OS=Drosophila melanogaster GN=Rab3 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.615e-36
Identity = 66/130 (50.77%), Postives = 101/130 (77.69%), Query Frame = -1
Query:  298 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMA 687
            FK++TV +  K VKLQIWDTAGQER+RTIT++YYRGA G I++YDVT+++SFN+V+ W+ +I  Y+ +N   +LVGNKCD+ D++V+S+E  +  AD++G+ F ETSAK+++NV+  F  +   I ++M+
Sbjct:   58 FKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEDSFNSVQDWVTQIKTYSWDNAQVILVGNKCDMEDQRVISFERGRQLADQLGVEFFETSAKENVNVKAVFERLVDIICDKMS 187          
BLAST of CX295521 vs. ExPASy Swiss-Prot
Match: RAB3_CAEEL (Ras-related protein Rab-3 OS=Caenorhabditis elegans GN=rab-3 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.615e-36
Identity = 75/165 (45.45%), Postives = 110/165 (66.67%), Query Frame = -1
Query:  220 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQ---------PVNQKASC 687
            FK++TV +  K VKLQIWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN+V+ W  +I  Y+ EN   +LVGNKCD+  ++VVS +  +  AD++G+ F ETSAK+++NV+  F  +   I ++MA     +  + P  Q KGQ         P  Q+ +C
Sbjct:   59 FKVKTVFRGDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWCTQIKTYSWENAQVVLVGNKCDMDSERVVSMDRGRQLADQLGLEFFETSAKENINVKAVFEKLVEIICDKMAE----SLDKDPQQQPKGQKLEANPTQKPAQQQCNC 219          
The following BLAST results are available for this feature:
BLAST of CX295521 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB3A_PIG1.478e-3645.68Ras-related protein Rab-3A OS=Sus scrofa GN=RAB3A ... [more]
RAB3A_MOUSE1.478e-3645.68Ras-related protein Rab-3A OS=Mus musculus GN=Rab3... [more]
RAB3A_MACFA1.478e-3645.68Ras-related protein Rab-3A OS=Macaca fascicularis ... [more]
RAB3A_HUMAN1.478e-3645.68Ras-related protein Rab-3A OS=Homo sapiens GN=RAB3... [more]
RAB3A_BOVIN1.478e-3645.68Ras-related protein Rab-3A OS=Bos taurus GN=RAB3A ... [more]
RAB37_MOUSE1.478e-3647.77Ras-related protein Rab-37 OS=Mus musculus GN=Rab3... [more]
SEC4_YEAST2.521e-3646.88Ras-related protein SEC4 OS=Saccharomyces cerevisi... [more]
RABF1_DICDI4.299e-3656.59Ras-related protein RabF1 OS=Dictyostelium discoid... [more]
RAB3_DROME5.615e-3650.77Ras-related protein Rab-3 OS=Drosophila melanogast... [more]
RAB3_CAEEL5.615e-3645.45Ras-related protein Rab-3 OS=Caenorhabditis elegan... [more]

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Properties
Property NameValue
Genbank descriptionC05073A12SK DroRLeaf1 Citrus clementina cDNA clone C05073A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295521 ID=CX295521; Name=CX295521; organism=Citrus clementina; type=EST; length=687bp
GCCACTATCAAGCAACTCCTCATTTGTACATGCCATATAATAGTAATATA
GACTGAAAGAATTGAAATTTCACAATAACTTACAAAAACTAGTAAAGCAA
TCCGTCATATGATTCATGGGGTAGGAATAGTTTTTCACTGGTTCCTACAA
CGTGATTGAGAAAGCTACCCATAAACAAATGCACGCAATGAAGGATAAGA
CAAACGATTAAGTTGAGCAGCAGCTGGCCTTCTGGTTCACCGGTTGTCCT
TTTATCTGCACAGTTGGTGGCCTTGCATTGTTCATTGCAGGTTGACTTGC
CATCCTGTTCTTAATGTCAGCAGTCATAGCCATAAAAGCTTGTTCCACGT
TCATAGAATCCTTTGCGCTGGTCTCCATGAACGGGATGCCAATTTCATCA
GCAAATGCCTTCGCTGTTTCATAAGAGACAACCTTCTTATCAGTGAGATC
ACACTTGTTTCCAACCAGAAGCTTGTTTACATTTTCACTTGCATAGCGAT
CAATTTCATTCAACCACTGCTTAACGTTGTTGAAGCTCTCTTGGTCTGTA
ACATCATAAACAATGATAATGCCATGTGCTCCACGGTAGTAGCTGCTAGT
GATTGTCCTGAATCGTTCTTGCCCTGCAGTGTCCCAAATTTGGAGTTTTA
CAGTCTTCCCGTCTTGCTCCACTGTGCGAATTTTAAA
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