CX295529

Overview
NameCX295529
Unique NameCX295529
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295529 vs. ExPASy Swiss-Prot
Match: RB11B_BOVIN (Ras-related protein Rab-11B OS=Bos taurus GN=RAB11B PE=2 SV=3)

HSP 1 Score: 96.2857 bits (238), Expect = 1.712e-19
Identity = 55/154 (35.71%), Postives = 83/154 (53.90%), Query Frame = 1
Query:  112 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPF 564
            FK+V++GD G GK+  + R    EF  + + TIGVE        +   I+   WDTAGQE++  +   YY     A++++D+   LTY+NV  W ++L      NI I+L GNK D+++ R V   +   F  K NL + E SA  + N E+ F
Sbjct:   12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAF 165          
BLAST of CX295529 vs. ExPASy Swiss-Prot
Match: RAB4A_RAT (Ras-related protein Rab-4A OS=Rattus norvegicus GN=Rab4a PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.712e-19
Identity = 60/184 (32.61%), Postives = 100/184 (54.35%), Query Frame = 1
Query:   91 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDV-KNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAP 633
            +T D+  FK +++G+ GTGK+  + + +  +F+     TIGVE            ++   WDTAGQE+F  +   YY     A++++D+T+R TY  +  W  D   +  +NI I+LCGNK D+  +R+V   + + F ++  L + E SA +  N E+ F+  ARK+     L+ +ES  L P
Sbjct:    3 ETYDF-LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFMQCARKI-----LNKIESGELDP 180          
BLAST of CX295529 vs. ExPASy Swiss-Prot
Match: RAB9B_PONAB (Ras-related protein Rab-9B OS=Pongo abelii GN=RAB9B PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.236e-19
Identity = 53/164 (32.32%), Postives = 87/164 (53.05%), Query Frame = 1
Query:  115 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--LQYYEISAKSNYNFEKPFLYLARKL 585
            K++++GDGG GK++ + R++T +F+ +   TIGVE    D   +   +    WDTAGQE+F  LR  +Y    C ++ F V  R +++N+  W ++          E+ P V+ GNKVD ++RQV  ++      +N    Y E SAK + N    F    R++
Sbjct:    9 KVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKVDKEDRQVTTEEAQAWCMENGDYPYLETSAKDDTNVTVAFEEAVRQV 172          
BLAST of CX295529 vs. ExPASy Swiss-Prot
Match: RAB9B_MOUSE (Ras-related protein Rab-9B OS=Mus musculus GN=Rab9b PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.236e-19
Identity = 53/164 (32.32%), Postives = 86/164 (52.44%), Query Frame = 1
Query:  115 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKAK--QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 585
            K++++GDGG GK++ + R++T +F+ +   TIGVE    D   +   +    WDTAGQE+F  LR  +Y    C ++ F V  R +++N+  W ++          ++ P V+ GNKVD ++RQV  +  Q       N  Y E SAK + N    F    R++
Sbjct:    9 KVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPDHFPFVVLGNKVDKEDRQVTTEEAQAWCMENGNYPYLETSAKDDTNVTVAFEEAVRQV 172          
BLAST of CX295529 vs. ExPASy Swiss-Prot
Match: RAB9B_HUMAN (Ras-related protein Rab-9B OS=Homo sapiens GN=RAB9B PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.236e-19
Identity = 53/164 (32.32%), Postives = 87/164 (53.05%), Query Frame = 1
Query:  115 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--LQYYEISAKSNYNFEKPFLYLARKL 585
            K++++GDGG GK++ + R++T +F+ +   TIGVE    D   +   +    WDTAGQE+F  LR  +Y    C ++ F V  R +++N+  W ++          E+ P V+ GNKVD ++RQV  ++      +N    Y E SAK + N    F    R++
Sbjct:    9 KVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKVDKEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQV 172          
BLAST of CX295529 vs. ExPASy Swiss-Prot
Match: RAB7_ARATH (Ras-related protein Rab7 OS=Arabidopsis thaliana GN=RAB7 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.236e-19
Identity = 51/165 (30.91%), Postives = 89/165 (53.94%), Query Frame = 1
Query:  115 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRD-LCRVCEN----IPIVLCGNKVDV---KNRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLAR 579
            K++I+GD G GKT+ + +++  +F ++Y+ TIG +    +   +   +    WDTAGQE+F  L   +Y    C ++++DV    +++++  WH + L R         P +L GNKVD+    +R V  K+       K N+ Y+E SAK +YN +  FL + +
Sbjct:   10 KVIILGDSGVGKTSLMNQYVNNKFSQQYKATIGADFVTKELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNHLKSFESLDNWHNEFLTRASPRDPMAFPFILLGNKVDIDGGNSRVVSEKKAREWCAEKGNIVYFETSAKEDYNVDDSFLCITK 174          
BLAST of CX295529 vs. ExPASy Swiss-Prot
Match: RAB4A_HUMAN (Ras-related protein Rab-4A OS=Homo sapiens GN=RAB4A PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.236e-19
Identity = 60/184 (32.61%), Postives = 100/184 (54.35%), Query Frame = 1
Query:   91 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDV-KNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAP 633
            +T D+  FK +++G+ GTGK+  + + +  +F+     TIGVE            ++   WDTAGQE+F  +   YY     A++++D+T+R TY  +  W  D   +  +NI I+LCGNK D+  +R+V   + + F ++  L + E SA +  N E+ F+  ARK+     L+ +ES  L P
Sbjct:    3 ETYDF-LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI-----LNKIESGELDP 180          
BLAST of CX295529 vs. ExPASy Swiss-Prot
Match: RAB4A_BOVIN (Ras-related protein Rab-4A OS=Bos taurus GN=RAB4A PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.236e-19
Identity = 60/184 (32.61%), Postives = 100/184 (54.35%), Query Frame = 1
Query:   91 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDV-KNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAP 633
            +T D+  FK +++G+ GTGK+  + + +  +F+     TIGVE            ++   WDTAGQE+F  +   YY     A++++D+T+R TY  +  W  D   +  +NI I+LCGNK D+  +R+V   + + F ++  L + E SA +  N E+ F+  ARK+     L+ +ES  L P
Sbjct:    3 ETYDF-LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDTDREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI-----LNKIESGELDP 180          
BLAST of CX295529 vs. ExPASy Swiss-Prot
Match: RAB1_THEPA (Ras-related protein Rab-1 OS=Theileria parva GN=rab1 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.236e-19
Identity = 55/175 (31.43%), Postives = 93/175 (53.14%), Query Frame = 1
Query:  112 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQVTFH--RKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPA 624
            FK++++GD GTGK++ + R     + + Y  TIGV+        +   I+   WDTAGQE+F  +   YY      I ++DVT +L++ ++  TW +D+ +    N+  +L GNK+D+   +V +     H   + N+ Y E SAK++ N EK F  +A+ L      +   +PA
Sbjct:    8 FKIIVIGDSGTGKSSLLLRFADNTYSESYMSTIGVDFKIKTVKIDNTTIKLQIWDTAGQERFRTITSTYYRGAHGIICVYDVTNKLSFDHITETWLQDIDKYATSNVCKLLIGNKIDLAESRVVSADEAKHVAEQNNMNYIEASAKTDSNVEKAFTTIAKALKDKVTQYPSNAPA 182          
BLAST of CX295529 vs. ExPASy Swiss-Prot
Match: RAB18_CHICK (Ras-related protein Rab-18 OS=Gallus gallus GN=RAB18 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.920e-19
Identity = 58/173 (33.53%), Postives = 89/173 (51.45%), Query Frame = 1
Query:  109 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV--LCGNKVDVKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVES 618
            + K++I+G+ G GK++ + R     F+ +   TIGV+        +  K +   WDTAGQE+F  L   YY   Q  I+++DVT R T+  +  W  +L   C    IV  L GNK+D +NR+V   + + F RK ++ + E SAK+    +  F  L  K+   P L   ES
Sbjct:    8 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVKMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESES 180          
The following BLAST results are available for this feature:
BLAST of CX295529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11B_BOVIN1.712e-1935.71Ras-related protein Rab-11B OS=Bos taurus GN=RAB11... [more]
RAB4A_RAT1.712e-1932.61Ras-related protein Rab-4A OS=Rattus norvegicus GN... [more]
RAB9B_PONAB2.236e-1932.32Ras-related protein Rab-9B OS=Pongo abelii GN=RAB9... [more]
RAB9B_MOUSE2.236e-1932.32Ras-related protein Rab-9B OS=Mus musculus GN=Rab9... [more]
RAB9B_HUMAN2.236e-1932.32Ras-related protein Rab-9B OS=Homo sapiens GN=RAB9... [more]
RAB7_ARATH2.236e-1930.91Ras-related protein Rab7 OS=Arabidopsis thaliana G... [more]
RAB4A_HUMAN2.236e-1932.61Ras-related protein Rab-4A OS=Homo sapiens GN=RAB4... [more]
RAB4A_BOVIN2.236e-1932.61Ras-related protein Rab-4A OS=Bos taurus GN=RAB4A ... [more]
RAB1_THEPA2.236e-1931.43Ras-related protein Rab-1 OS=Theileria parva GN=ra... [more]
RAB18_CHICK2.920e-1933.53Ras-related protein Rab-18 OS=Gallus gallus GN=RAB... [more]

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Properties
Property NameValue
Genbank descriptionC05073B09SK DroRLeaf1 Citrus clementina cDNA clone C05073B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295529 ID=CX295529; Name=CX295529; organism=Citrus clementina; type=EST; length=703bp
GAGGCCTCTCGCCGCCCCGACACTGAGCGCTCTCTCGCTTCAATTCAAAA
TCCAAACGCAACAAATCAACTCATGGCTCTGCCGAATCAGCAAACTGTTG
ATTATCCAAGCTTCAAACTTGTAATTGTCGGCGATGGTGGCACTGGGAAG
ACTACCTTTGTGAAGAGGCATCTTACTGGTGAATTCGAGAAGAAATATGA
ACCGACCATTGGTGTGGAAGTTCATCCATTGGACTTCTTTACCAACTGTG
GAAAAATACGATTCTATTGCTGGGACACTGCCGGACAAGAGAAGTTTGGT
GGTCTTAGAGATGGATACTACATCCATGGGCAATGTGCTATCATCATGTT
TGATGTTACTGCCCGCTTGACGTATAAGAATGTTCCGACGTGGCACCGTG
ATCTCTGCAGGGTGTGTGAAAACATCCCAATTGTTCTTTGCGGGAACAAG
GTCGATGTGAAGAACAGGCAGGTGAAAGCAAAGCAGGTTACTTTCCACAG
GAAGAAGAATTTGCAGTACTATGAGATCTCAGCCAAGAGCAATTACAACT
TTGAGAAGCCTTTTCTTTACCTTGCCAGAAAACTTGCTGGGGATCCTAAC
TTGCATTTTGTCGAGTCTCCTGCCCTTGCTCCCCCAGAGGTGCAAATCGA
TTTGGCTGCTCAGCAACACATGAAGCTGAACTTGCTGCTGCTGCTAGTCA
ACT
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