CX295529

Overview
NameCX295529
Unique NameCX295529
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295529 vs. ExPASy Swiss-Prot
Match: RB11B_DICDI (Ras-related protein Rab-11B OS=Dictyostelium discoideum GN=rab11B PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.444e-15
Identity = 51/162 (31.48%), Postives = 83/162 (51.23%), Query Frame = 1
Query:   91 QTVDYPSF-KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPF 564
            +T++Y    K+V++GD G GK+  + R+   EF      TIGVE        +   I+   WDTAGQEK+  + + YY     A+I++++  R ++ N+  W +       ++  I+L GNK D+K  R+V   +   F  K  +Q+ E SA  + N E  F
Sbjct:    4 KTIEYDYLCKIVVIGDSGVGKSNLLSRYNKNEFSVGKLSTIGVEFSTKTLKIDNKLIKLQLWDTAGQEKYNSITESYYKGAIGALIVYNIADRNSFNNLEKWLKKFRENAHQDYGIMLVGNKSDLKEYREVSTLEGKQFAEKHYMQFIETSALDSNNVETAF 165          
BLAST of CX295529 vs. ExPASy Swiss-Prot
Match: RASC_DICDI (Ras-like protein rasC OS=Dictyostelium discoideum GN=rasC PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.444e-15
Identity = 54/172 (31.40%), Postives = 84/172 (48.84%), Query Frame = 1
Query:  115 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI----------GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV---TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 585
            KLVIVGDGG GK+    +    +F  +Y+PTI            EV+ LD             DTAGQE++  +RD Y   G+  +I++ + +R +++ V T+   + RV      PIV+ GNK D+ ++  K   +      +     + E SAKS  N E+ F  L R++
Sbjct:    6 KLVIVGDGGVGKSALTIQLTQNQFIAEYDPTIENSYRKQVNIDEEVYMLDIL-----------DTAGQEEYSAMRDQYIRSGRGFLIVYSIISRASFEAVTTFREQILRVKDLSTYPIVIIGNKADLPDKDRKVPPMEGKELAKSFGAPFLETSAKSRVNVEEAFFTLVREI 166          
BLAST of CX295529 vs. ExPASy Swiss-Prot
Match: RACC_DICDI (Rho-related protein racC OS=Dictyostelium discoideum GN=racC PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.444e-15
Identity = 49/166 (29.52%), Postives = 84/166 (50.60%), Query Frame = 1
Query:  115 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN--------RQVKAKQVT-------FHRKKNLQYYEISAKSNYNFEKPF 564
            KLV++GDG  GKT  +  +    F + Y PT+  + + ++       I    WDTAGQE++  LR   Y +    +I F +T  ++++NV T W+ ++   C  +P +L G K+D ++        +Q   K +T         R K ++Y E SAK++ N ++ F
Sbjct:    8 KLVVIGDGAVGKTCLLISYANNRFPEDYIPTV-FDNYVVNLTAGDRNIELGLWDTAGQEEYDKLRPLSYANANVFLICFSITNPVSFENVYTKWYPEVMHFCPEVPQILVGTKLDTRDDRGVLDKLQQTGHKPITTEQGNDLARRIKAIKYMECSAKTSQNLKQVF 172          
BLAST of CX295529 vs. ExPASy Swiss-Prot
Match: RAB3D_HUMAN (Ras-related protein Rab-3D OS=Homo sapiens GN=RAB3D PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.444e-15
Identity = 44/161 (27.33%), Postives = 84/161 (52.17%), Query Frame = 1
Query:   91 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL--QYYEISAKSNYNFEKPF 564
            Q  DY  FKL+++G+   GKT+F+ R+    F   +  T+G++      + +  +I+   WDTAGQE++  +   YY      ++M+D+  + ++  V  W   +     +N  ++L GNK D+++ +V   +       +L  +++E SAK N N ++ F
Sbjct:   17 QNFDY-MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVF 176          
BLAST of CX295529 vs. ExPASy Swiss-Prot
Match: RECG_ENTHI (Rho-related protein racG OS=Entamoeba histolytica GN=RACG PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.722e-15
Identity = 45/126 (35.71%), Postives = 68/126 (53.97%), Query Frame = 1
Query:  115 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV 489
            KLVIVGDG  GKT  +  + T  F  +Y PT+  E +      +  KI    WDTAGQE +  LR   Y      ++ F V A  +Y+NV   W  ++ + C N+PI+L G K+D+++   + K++
Sbjct:    5 KLVIVGDGAVGKTCMLISYTTNAFPNEYIPTV-FENYNSSLVVDDVKINLGLWDTAGQEDYDRLRPLSYPSTDVFLVCFSVIAPASYENVEGKWKPEIDQHCPNVPIILVGTKIDIRDDPEQVKRL 129          
BLAST of CX295529 vs. ExPASy Swiss-Prot
Match: RAS_SCHPO (Ras-like protein 1 OS=Schizosaccharomyces pombe GN=ras1 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 9.722e-15
Identity = 48/162 (29.63%), Postives = 86/162 (53.09%), Query Frame = 1
Query:  112 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 585
            +KLV+VGDGG GK+    + +   F  +Y+PTI             G +     DTAGQE++  +R+ Y   G+  ++++++T+R ++  + T+++ + RV   +  P+VL  NK D++  +V  +A+     +  +  Y E SAK   N E+ F  L R +
Sbjct:    9 YKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKKCEIDGEGAL-LDVLDTAGQEEYSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQILRVKDKDTFPVVLVANKCDLEAERVVSRAEGEQLAKSMHCLYVETSAKLRLNVEEAFYSLVRTI 169          
BLAST of CX295529 vs. ExPASy Swiss-Prot
Match: RAB12_RAT (Ras-related protein Rab-12 (Fragment) OS=Rattus norvegicus GN=Rab12 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.722e-15
Identity = 46/153 (30.07%), Postives = 84/153 (54.90%), Query Frame = 1
Query:  127 VGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVK-NRQVKAKQVTFHRKK--NLQYYEISAKSNYNFEKPFLYL 573
            +G  G GKT+ ++R     F +  + T+GV+           KIR   WDTAGQE+F  +   YY   +  I+++D+T + T+ ++P W + + +   E+  ++L GNK+D + +R++  +Q     ++   ++  E SAK N+N ++ FL L
Sbjct:    1 IGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLAGNKLDCETDREISRQQGEKFAQQITGMRLSEPSAKDNFNVDEIFLKL 153          
BLAST of CX295529 vs. ExPASy Swiss-Prot
Match: RHO1_YEAST (GTP-binding protein RHO1 OS=Saccharomyces cerevisiae GN=RHO1 PE=1 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 1.270e-14
Identity = 54/166 (32.53%), Postives = 80/166 (48.19%), Query Frame = 1
Query:  115 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN--------RQVKAKQVTFHRKKNLQ-------YYEISAKSNYNFEKPF 564
            KLVIVGDG  GKT  +     G+F + Y PT+  E +  D   +  ++    WDTAGQE +  LR   Y      +I F +    + +NV   W  ++   C+ +PI+L G KVD++N        RQ   + VT    +++        YYE SAK+ Y   + F
Sbjct:   12 KLVIVGDGACGKTCLLIVFSKGQFPEVYVPTV-FENYVADVEVDGRRVELALWDTAGQEDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQGVPIILVGCKVDLRNDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVF 176          
BLAST of CX295529 vs. ExPASy Swiss-Prot
Match: RASD_DICDI (Ras-like protein rasD OS=Dictyostelium discoideum GN=rasD PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.270e-14
Identity = 51/162 (31.48%), Postives = 85/162 (52.47%), Query Frame = 1
Query:  112 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 585
            +KLVIVG GG GK+    + +   F  +Y+PTI  + +      +         DTAGQE++  +RD Y   GQ  + ++ +T+R +Y  + ++   + RV   + +P++L GNK D+ + RQV   +     +  N  + E SAKS  N E+ F  L R++
Sbjct:    4 YKLVIVGGGGVGKSALTIQLIQNHFIDEYDPTIE-DSYRKQVSIDDETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSYDEIASFREQILRVKDKDRVPLILVGNKADLDHERQVSVNEGQELAKGFNCPFMESSAKSRINVEEAFYSLVREI 164          
BLAST of CX295529 vs. ExPASy Swiss-Prot
Match: RAP1B_DANRE (Ras-related protein Rap-1b OS=Danio rerio GN=rap1b PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.270e-14
Identity = 49/163 (30.06%), Postives = 88/163 (53.99%), Query Frame = 1
Query:  112 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAK---QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 585
            +KLV++G GG GK+    + + G F +KY+PTI  + +      +  +      DTAG E+F  +RD Y  +GQ   +++ +TA+ T+ ++      + RV   +++P++L GNK D+++ +V  K   Q    +  +  + E SAKS  N  + F  L R++
Sbjct:    4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNSCAFLESSAKSKINVNEIFYDLVRQI 165          
The following BLAST results are available for this feature:
BLAST of CX295529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11B_DICDI7.444e-1531.48Ras-related protein Rab-11B OS=Dictyostelium disco... [more]
RASC_DICDI7.444e-1531.40Ras-like protein rasC OS=Dictyostelium discoideum ... [more]
RACC_DICDI7.444e-1529.52Rho-related protein racC OS=Dictyostelium discoide... [more]
RAB3D_HUMAN7.444e-1527.33Ras-related protein Rab-3D OS=Homo sapiens GN=RAB3... [more]
RECG_ENTHI9.722e-1535.71Rho-related protein racG OS=Entamoeba histolytica ... [more]
RAS_SCHPO9.722e-1529.63Ras-like protein 1 OS=Schizosaccharomyces pombe GN... [more]
RAB12_RAT9.722e-1530.07Ras-related protein Rab-12 (Fragment) OS=Rattus no... [more]
RHO1_YEAST1.270e-1432.53GTP-binding protein RHO1 OS=Saccharomyces cerevisi... [more]
RASD_DICDI1.270e-1431.48Ras-like protein rasD OS=Dictyostelium discoideum ... [more]
RAP1B_DANRE1.270e-1430.06Ras-related protein Rap-1b OS=Danio rerio GN=rap1b... [more]

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Properties
Property NameValue
Genbank descriptionC05073B09SK DroRLeaf1 Citrus clementina cDNA clone C05073B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295529 ID=CX295529; Name=CX295529; organism=Citrus clementina; type=EST; length=703bp
GAGGCCTCTCGCCGCCCCGACACTGAGCGCTCTCTCGCTTCAATTCAAAA
TCCAAACGCAACAAATCAACTCATGGCTCTGCCGAATCAGCAAACTGTTG
ATTATCCAAGCTTCAAACTTGTAATTGTCGGCGATGGTGGCACTGGGAAG
ACTACCTTTGTGAAGAGGCATCTTACTGGTGAATTCGAGAAGAAATATGA
ACCGACCATTGGTGTGGAAGTTCATCCATTGGACTTCTTTACCAACTGTG
GAAAAATACGATTCTATTGCTGGGACACTGCCGGACAAGAGAAGTTTGGT
GGTCTTAGAGATGGATACTACATCCATGGGCAATGTGCTATCATCATGTT
TGATGTTACTGCCCGCTTGACGTATAAGAATGTTCCGACGTGGCACCGTG
ATCTCTGCAGGGTGTGTGAAAACATCCCAATTGTTCTTTGCGGGAACAAG
GTCGATGTGAAGAACAGGCAGGTGAAAGCAAAGCAGGTTACTTTCCACAG
GAAGAAGAATTTGCAGTACTATGAGATCTCAGCCAAGAGCAATTACAACT
TTGAGAAGCCTTTTCTTTACCTTGCCAGAAAACTTGCTGGGGATCCTAAC
TTGCATTTTGTCGAGTCTCCTGCCCTTGCTCCCCCAGAGGTGCAAATCGA
TTTGGCTGCTCAGCAACACATGAAGCTGAACTTGCTGCTGCTGCTAGTCA
ACT
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