CX295529

Overview
NameCX295529
Unique NameCX295529
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295529 vs. ExPASy Swiss-Prot
Match: RAS1_HYDMA (Ras-like protein RAS1 OS=Hydra magnipapillata GN=RAS1 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.302e-14
Identity = 49/164 (29.88%), Postives = 81/164 (49.39%), Query Frame = 1
Query:  112 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKLAGD 594
            FK+V+VG GG GK+    + +   F + Y+PTI  + +      +         DTAGQE++  +R+ Y   G+  + +F VT+  +++ +  +     RV   + +P+VL GNKVD+  R V  K          + Y E SAK+    E+ F  L R++  D
Sbjct:   10 FKMVVVGAGGVGKSALTIQLIQNHFVEDYDPTI-EDSYIKQVVVDGAICILDILDTAGQEEYSAMREHYMRTGEGFLCIFAVTSLKSFQEIDNFRTQALRVKDADKVPMVLVGNKVDLPKRDVSTKDGNDKALSFGIPYVETSAKTKQGVEEAFFTLVREILAD 172          
BLAST of CX295529 vs. ExPASy Swiss-Prot
Match: RAP2B_RAT (Ras-related protein Rap-2b OS=Rattus norvegicus GN=Rap2b PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.302e-14
Identity = 49/173 (28.32%), Postives = 93/173 (53.76%), Query Frame = 1
Query:  112 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL------QYYEISAKSNYNFEKPFLYLARKL--AGDPN 600
            +K+V++G GG GK+    + +TG F +KY+PTI  + +  +   +         DTAG E+F  +RD Y  +GQ  I+++ +  + +++++      + RV   E +P++L GNKVD++      ++V++   K L       + E SAK+  + ++ F  + R++  A  PN
Sbjct:    4 YKVVVLGSGGVGKSALTVQFVTGSFIEKYDPTI-EDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYERVPMILVGNKVDLEGE----REVSYGEGKALAEEWSCPFMETSAKNKASVDELFAEIVRQMNYAAQPN 171          
BLAST of CX295529 vs. ExPASy Swiss-Prot
Match: RAP2B_MOUSE (Ras-related protein Rap-2b OS=Mus musculus GN=Rap2b PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.302e-14
Identity = 49/173 (28.32%), Postives = 93/173 (53.76%), Query Frame = 1
Query:  112 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL------QYYEISAKSNYNFEKPFLYLARKL--AGDPN 600
            +K+V++G GG GK+    + +TG F +KY+PTI  + +  +   +         DTAG E+F  +RD Y  +GQ  I+++ +  + +++++      + RV   E +P++L GNKVD++      ++V++   K L       + E SAK+  + ++ F  + R++  A  PN
Sbjct:    4 YKVVVLGSGGVGKSALTVQFVTGSFIEKYDPTI-EDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYERVPMILVGNKVDLEGE----REVSYGEGKALAEEWSCPFMETSAKNKASVDELFAEIVRQMNYAAQPN 171          
BLAST of CX295529 vs. ExPASy Swiss-Prot
Match: RAP2B_HUMAN (Ras-related protein Rap-2b OS=Homo sapiens GN=RAP2B PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.302e-14
Identity = 49/173 (28.32%), Postives = 93/173 (53.76%), Query Frame = 1
Query:  112 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL------QYYEISAKSNYNFEKPFLYLARKL--AGDPN 600
            +K+V++G GG GK+    + +TG F +KY+PTI  + +  +   +         DTAG E+F  +RD Y  +GQ  I+++ +  + +++++      + RV   E +P++L GNKVD++      ++V++   K L       + E SAK+  + ++ F  + R++  A  PN
Sbjct:    4 YKVVVLGSGGVGKSALTVQFVTGSFIEKYDPTI-EDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYERVPMILVGNKVDLEGE----REVSYGEGKALAEEWSCPFMETSAKNKASVDELFAEIVRQMNYAAQPN 171          
BLAST of CX295529 vs. ExPASy Swiss-Prot
Match: RAP2A_PIG (Ras-related protein Rap-2a OS=Sus scrofa GN=RAP2A PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.302e-14
Identity = 49/173 (28.32%), Postives = 93/173 (53.76%), Query Frame = 1
Query:  112 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL------QYYEISAKSNYNFEKPFLYLARKL--AGDPN 600
            +K+V++G GG GK+    + +TG F +KY+PTI  + +  +   +         DTAG E+F  +RD Y  +GQ  I+++ +  + +++++      + RV   E +P++L GNKVD++      ++V++   K L       + E SAK+  + ++ F  + R++  A  PN
Sbjct:    4 YKVVVLGSGGVGKSALTVQFVTGSFIEKYDPTI-EDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYERVPMILVGNKVDLEGE----REVSYGEGKALAEEWSCPFMETSAKNKASVDELFAEIVRQMNYAAQPN 171          
BLAST of CX295529 vs. ExPASy Swiss-Prot
Match: RALBA_XENLA (Ras-related protein ralB-A OS=Xenopus laevis GN=ralb-A PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.302e-14
Identity = 47/162 (29.01%), Postives = 87/162 (53.70%), Query Frame = 1
Query:  115 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKN-RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 585
            K+++VG GG GK+    + +  EF + YEPT   + +      +  +++    DTAGQE +  +RD Y+  G+  +++F +T   ++     +   + RV    + IP+++ GNK D+++ RQV   +     ++  +QY E SAK+  N +K F  L R++
Sbjct:   16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLIVGNKSDLEDRRQVPMDEARGKAEEWGVQYVETSAKTRANVDKVFFDLMREI 176          
BLAST of CX295529 vs. ExPASy Swiss-Prot
Match: RAB32_PIG (Ras-related protein Rab-32 OS=Sus scrofa GN=RAB32 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.302e-14
Identity = 51/168 (30.36%), Postives = 87/168 (51.79%), Query Frame = 1
Query:  112 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVE--VHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVK--NRQVKAKQVTFHRKKNLQ-YYEISAKSNYNFEKPFLYLARKL 585
            FK++++G+ G GKT+ +KR++   F + Y  TIGV+  +  L++ +    +R   WD AGQE+FG +   YY     A+++FD++    ++ V  W  DL           IP VL  NK D K  + Q  ++   F ++     ++E SAK N N ++   +L   +
Sbjct:   28 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSRT-LVRLQLWDIAGQERFGNMTRVYYKEAVGALVVFDISRGSPFEAVLKWKNDLDSKVHLPNGSPIPAVLLANKCDQKKDSGQNPSQMDQFCKEHGFTGWFETSAKDNINIDEAARFLVENI 194          
BLAST of CX295529 vs. ExPASy Swiss-Prot
Match: RAB31_MOUSE (Ras-related protein Rab-31 OS=Mus musculus GN=Rab31 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.302e-14
Identity = 53/165 (32.12%), Postives = 85/165 (51.52%), Query Frame = 1
Query:  115 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN---CGKI--RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 585
            K+ ++GD G GK++ V R +   F+    PTIG       F T    CG    +F  WDTAGQE+F  L   YY     A+I++D+T + ++  +  W ++L     ENI + + GNK D+ + R+V  K    + +       E SAK+  N E+ F  ++R++
Sbjct:    7 KVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGAS-----FMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFHTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 166          
BLAST of CX295529 vs. ExPASy Swiss-Prot
Match: RAB1C_DICDI (Ras-related protein Rab-1C OS=Dictyostelium discoideum GN=Rab1C PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.302e-14
Identity = 45/157 (28.66%), Postives = 81/157 (51.59%), Query Frame = 1
Query:  115 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLA 576
            K++++GD G GK+  + R     F   Y  TIGV+        +  KI+   WDTAGQE+F  +   YY      II++D+T+  ++ ++  W  D+ R    ++  ++ GNK D+ +++    ++   F  + N+   E SAK +   ++ F+ LA
Sbjct:   35 KILVIGDSGVGKSCMLLRFADNRFTDSYISTIGVDFCIRTIELDGKKIKLQIWDTAGQERFKTITTSYYRGAHGLIIVYDITSMDSFNSIKRWLIDVDRFASPSVLKLIVGNKCDLNSKRAVDFKIAKKFADELNIPIMETSAKESTAIDEAFIKLA 191          
BLAST of CX295529 vs. ExPASy Swiss-Prot
Match: RHOG_MOUSE (Rho-related GTP-binding protein RhoG OS=Mus musculus GN=Rhog PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.230e-14
Identity = 41/119 (34.45%), Postives = 64/119 (53.78%), Query Frame = 1
Query:  109 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVK 462
            S K V+VGDG  GKT  +  + T  F K+Y PT+  + +      +   +    WDTAGQE++  LR   Y      +I F + +  +Y+NV   WH ++C  C ++PI+L G K D++
Sbjct:    3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTV-FDNYSAQSAVDGRTVNLNLWDTAGQEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLR 120          
The following BLAST results are available for this feature:
BLAST of CX295529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAS1_HYDMA6.302e-1429.88Ras-like protein RAS1 OS=Hydra magnipapillata GN=R... [more]
RAP2B_RAT6.302e-1428.32Ras-related protein Rap-2b OS=Rattus norvegicus GN... [more]
RAP2B_MOUSE6.302e-1428.32Ras-related protein Rap-2b OS=Mus musculus GN=Rap2... [more]
RAP2B_HUMAN6.302e-1428.32Ras-related protein Rap-2b OS=Homo sapiens GN=RAP2... [more]
RAP2A_PIG6.302e-1428.32Ras-related protein Rap-2a OS=Sus scrofa GN=RAP2A ... [more]
RALBA_XENLA6.302e-1429.01Ras-related protein ralB-A OS=Xenopus laevis GN=ra... [more]
RAB32_PIG6.302e-1430.36Ras-related protein Rab-32 OS=Sus scrofa GN=RAB32 ... [more]
RAB31_MOUSE6.302e-1432.12Ras-related protein Rab-31 OS=Mus musculus GN=Rab3... [more]
RAB1C_DICDI6.302e-1428.66Ras-related protein Rab-1C OS=Dictyostelium discoi... [more]
RHOG_MOUSE8.230e-1434.45Rho-related GTP-binding protein RhoG OS=Mus muscul... [more]

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Properties
Property NameValue
Genbank descriptionC05073B09SK DroRLeaf1 Citrus clementina cDNA clone C05073B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295529 ID=CX295529; Name=CX295529; organism=Citrus clementina; type=EST; length=703bp
GAGGCCTCTCGCCGCCCCGACACTGAGCGCTCTCTCGCTTCAATTCAAAA
TCCAAACGCAACAAATCAACTCATGGCTCTGCCGAATCAGCAAACTGTTG
ATTATCCAAGCTTCAAACTTGTAATTGTCGGCGATGGTGGCACTGGGAAG
ACTACCTTTGTGAAGAGGCATCTTACTGGTGAATTCGAGAAGAAATATGA
ACCGACCATTGGTGTGGAAGTTCATCCATTGGACTTCTTTACCAACTGTG
GAAAAATACGATTCTATTGCTGGGACACTGCCGGACAAGAGAAGTTTGGT
GGTCTTAGAGATGGATACTACATCCATGGGCAATGTGCTATCATCATGTT
TGATGTTACTGCCCGCTTGACGTATAAGAATGTTCCGACGTGGCACCGTG
ATCTCTGCAGGGTGTGTGAAAACATCCCAATTGTTCTTTGCGGGAACAAG
GTCGATGTGAAGAACAGGCAGGTGAAAGCAAAGCAGGTTACTTTCCACAG
GAAGAAGAATTTGCAGTACTATGAGATCTCAGCCAAGAGCAATTACAACT
TTGAGAAGCCTTTTCTTTACCTTGCCAGAAAACTTGCTGGGGATCCTAAC
TTGCATTTTGTCGAGTCTCCTGCCCTTGCTCCCCCAGAGGTGCAAATCGA
TTTGGCTGCTCAGCAACACATGAAGCTGAACTTGCTGCTGCTGCTAGTCA
ACT
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