CX295538

Overview
NameCX295538
Unique NameCX295538
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length771
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15236 contig Ccv1_Contig15236:146..918. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295538 vs. ExPASy Swiss-Prot
Match: TLP_WHEAT (Thaumatin-like protein PWIR2 OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.154e-17
Identity = 49/125 (39.20%), Postives = 71/125 (56.80%), Query Frame = 1
Query:   43 GFELASKAKKTLDVPSPWK-GRFWARTQCSRDSSGKFTCATADCGSGQVTCNGNGAAPPASLVEFTIAADKGQDFFDLSLVDGFNLPLSVAPQGGSGATCTTSSCKANVNAVCPSELAVKGSDGN 414
            GF L S    +++VP+  + GR WART CS +  G  +C T DCG GQ++C+ +G  PPA+L E+TI     QDF+D+S++DGFNL +  +   G    C   SC        P+++A     GN
Sbjct:   43 GFALGSGQTSSINVPAGTQAGRIWARTGCSFNG-GSGSCQTGDCG-GQLSCSLSGR-PPATLAEYTIGGGSTQDFYDISVIDGFNLAMDFSCSTGDALQCRDPSCPPPQAYQHPNDVATHACSGN 164          
BLAST of CX295538 vs. ExPASy Swiss-Prot
Match: TLP_ORYSJ (Thaumatin-like protein OS=Oryza sativa subsp. japonica GN=Os12g0628600 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.478e-14
Identity = 44/105 (41.90%), Postives = 63/105 (60.00%), Query Frame = 1
Query:   43 GFELASKAKKTLDVPSPWK-GRFWARTQCSRDSSGKFTCATADCGSGQVTCNGNGAAPPASLVEFTIAADKGQDFFDLSLVDGFNLPLSVAPQGGSGATCTTSSC 354
            G +L+     T++VP+    GR W RT CS D SG+ +CAT DC +G ++C  +G   P +L EFTI     QDF+DLS++DG+N+ +S +   G   TC  S C
Sbjct:   49 GVQLSPGQTWTINVPAGTSSGRVWGRTGCSFDGSGRGSCATGDC-AGALSCTLSG-QKPLTLAEFTIGG--SQDFYDLSVIDGYNVAMSFSCSSGVTVTCRDSRC 149          
BLAST of CX295538 vs. ExPASy Swiss-Prot
Match: RST1_AVESA (Thaumatin-like pathogenesis-related protein 1 OS=Avena sativa GN=RASTL-1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.299e-14
Identity = 46/125 (36.80%), Postives = 73/125 (58.40%), Query Frame = 1
Query:   43 GFELASKAKKTLDVPSPWK-GRFWARTQCSRDSSGKFTCATADCGSGQVTCNGNGAAPPASLVEFTIAADKGQDFFDLSLVDGFNLPLSVAPQGGSGATCTTSSCKANVNAVCPSELAVKGSDGN 414
            GF+L SK    ++VP+    GR W RT CS ++ G+ +CAT DC +G ++C  +G   PA+L E+TI     QDF+D+S++DGFNL +  +   G    C  ++C    +   P+++A    +GN
Sbjct:   44 GFQLNSKQSSNINVPAGTSAGRIWGRTGCSFNN-GRGSCATGDC-AGALSCTLSGQ--PATLAEYTIGGS--QDFYDISVIDGFNLAMDFSCSTGVALKCRDANCPDAYHH--PNDVATHACNGN 160          
BLAST of CX295538 vs. ExPASy Swiss-Prot
Match: RST3_AVESA (Thaumatin-like pathogenesis-related protein 3 OS=Avena sativa GN=RASTL-3 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.615e-14
Identity = 46/125 (36.80%), Postives = 72/125 (57.60%), Query Frame = 1
Query:   43 GFELASKAKKTLDVPSPWK-GRFWARTQCSRDSSGKFTCATADCGSGQVTCNGNGAAPPASLVEFTIAADKGQDFFDLSLVDGFNLPLSVAPQGGSGATCTTSSCKANVNAVCPSELAVKGSDGN 414
            GF+L SK    ++VP+    GR W RT CS ++ G+ +CAT DC +G ++C  +G   PA+L E+TI     QDF+D+S++DG+NL +  +   G    C  S C    +   P+++A    +GN
Sbjct:   44 GFQLNSKQSSNINVPAGTSAGRIWGRTGCSFNN-GRGSCATGDC-AGALSCTLSGQ--PATLAEYTIGGS--QDFYDISVIDGYNLAMDFSCSTGVALKCRDSGCPDAYHH--PNDVATHACNGN 160          
BLAST of CX295538 vs. ExPASy Swiss-Prot
Match: RST2_AVESA (Thaumatin-like pathogenesis-related protein 2 OS=Avena sativa GN=RASTL-2 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.578e-14
Identity = 45/125 (36.00%), Postives = 73/125 (58.40%), Query Frame = 1
Query:   43 GFELASKAKKTLDVPSPWK-GRFWARTQCSRDSSGKFTCATADCGSGQVTCNGNGAAPPASLVEFTIAADKGQDFFDLSLVDGFNLPLSVAPQGGSGATCTTSSCKANVNAVCPSELAVKGSDGN 414
            GF+L SK    ++VP+    GR W RT CS ++ G+ +CAT DC +G ++C  +G   PA+L E+TI     QDF+D+S++DG+NL +  +   G    C  ++C    +   P+++A    +GN
Sbjct:   44 GFQLNSKQSSNINVPAGTSAGRIWGRTGCSFNN-GRGSCATGDC-AGALSCTLSGQ--PATLAEYTIGGS--QDFYDISVIDGYNLAMDFSCSTGVALKCRDANCPDAYHH--PNDVATHACNGN 160          
The following BLAST results are available for this feature:
BLAST of CX295538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
TLP_WHEAT4.154e-1739.20Thaumatin-like protein PWIR2 OS=Triticum aestivum ... [more]
TLP_ORYSJ1.478e-1441.90Thaumatin-like protein OS=Oryza sativa subsp. japo... [more]
RST1_AVESA4.299e-1436.80Thaumatin-like pathogenesis-related protein 1 OS=A... [more]
RST3_AVESA5.615e-1436.80Thaumatin-like pathogenesis-related protein 3 OS=A... [more]
RST2_AVESA9.578e-1436.00Thaumatin-like pathogenesis-related protein 2 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionC05073C07SK DroRLeaf1 Citrus clementina cDNA clone C05073C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295538 ID=CX295538; Name=CX295538; organism=Citrus clementina; type=EST; length=771bp
GAGGGCCCTACCGCAGATGGAGGTGCTCAGCTGTCAGAAAATGGGTTCGA
GTTAGCATCCAAAGCAAAAAAGACTCTCGATGTTCCTTCCCCTTGGAAAG
GCCGTTTCTGGGCTCGAACACAGTGCTCTAGAGATTCCTCCGGCAAGTTC
ACTTGCGCCACTGCAGATTGTGGCTCAGGCCAAGTCACATGCAACGGTAA
TGGTGCAGCCCCACCGGCATCTCTCGTGGAATTCACAATTGCTGCAGACA
AAGGACAAGATTTCTTCGATCTTAGCCTCGTTGATGGCTTTAACTTGCCT
CTTTCAGTTGCCCCACAAGGCGGTTCTGGTGCTACTTGCACGACATCTAG
CTGTAAAGCCAACGTGAATGCTGTTTGTCCATCAGAGCTAGCAGTCAAAG
GATCCGATGGGAATGTTATTGCTTGCAAGAGTGCATGTGCAGCTTTTAAT
GAACCACAATATTGTTGCACTGGGGCATTCAATAAACCTGAGACTTGCCC
ACCGACTAAATATTCTAAGATTTTCAAAGACCAGTGCCCTCAAGCTTATA
GCTATGCTTATGATGATCGCACTAGCACATTTTCTTGCACTGGTGGTCCT
AATTACGATATTACTTTCTGTCCCTGAGAGATATTAGTAAGTAACGGAGG
TTGCCTAAAACTTTCAGCTTAAAATTTTAACATAATTTTAAGGTAATGAT
ATCATGCAATATTTAATAGTAGATGATGAAAATAAAGATAATTTTTTGTG
GTATCAAATTCATCATCATCT
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