CX295539

Overview
NameCX295539
Unique NameCX295539
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length646
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14242 contig Ccv1_Contig14242:32..677. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295539 vs. ExPASy Swiss-Prot
Match: CMTD1_MOUSE (Catechol-O-methyltransferase domain-containing protein 1 OS=Mus musculus GN=Comtd1 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 8.560e-28
Identity = 68/174 (39.08%), Postives = 105/174 (60.34%), Query Frame = 1
Query:   67 QSEKLYEYILETSVYPREPQCLKEIRELTDKHPWSAMMTAPDEAQFLSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKNNYINYHKRLIELVKVGGVIGYDNTLWGGSVV 588
            +   L++Y+L  S+  RE   L+ +R LT + P    M   ++AQ L+ L +LI AK  +++G FTGYS LA ALA+P+ G+++  ++  E  + G P+ ++A V  KID R  PAL  LD+L+   +  GTFD   VDADK N   Y++R ++L++ GGV+     LW G V+
Sbjct:   50 EDNPLWQYLLSRSM--REHPALRSLRLLTLEQPQGDSMMTCEQAQLLANLARLIKAKKALDLGTFTGYSALALALALPEAGRVVTCEVDAEPPKLGRPMWKQAEVEQKIDLRLQPALQTLDELLAAGE-AGTFDIAVVDADKENCTAYYERCLQLLRPGGVLAVLRVLWRGEVL 220          
BLAST of CX295539 vs. ExPASy Swiss-Prot
Match: CAMT2_DICDI (Probable caffeoyl-CoA O-methyltransferase 2 OS=Dictyostelium discoideum GN=omt6 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.907e-27
Identity = 63/165 (38.18%), Postives = 106/165 (64.24%), Query Frame = 1
Query:  118 EPQCLKEIRELTDKHPWSAMMTAPDEAQFLSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKNNYINYHKRLIELVKVGGVIGYDNTLWGGSVVAQPDADLD 612
            + + ++  +E  ++H    M+T  ++  F  +L++++NAK T++IGVFTG S L  ALA+ D+G+++A D++ E+ +  L    KAGV HKI+ +  PA   L +LI D+    T+DFVF+DADK  Y  Y++  ++L++ GG+I  DN L  G  VA P+A+++
Sbjct:   35 QKELIQFTKENIERH---IMLTQAEQCSFFKLLIQVLNAKKTIDIGVFTGLSSLTAALAMGDEGRVVACDVSTEYTQHALKFWAKAGVDHKINLKIQPASKTLQELI-DQGEENTYDFVFIDADKTGYDTYYELSLKLIRKGGIIAIDNVLQHGR-VADPNANVE 194          
BLAST of CX295539 vs. ExPASy Swiss-Prot
Match: CAMT1_DICDI (Probable caffeoyl-CoA O-methyltransferase 1 OS=Dictyostelium discoideum GN=omt5 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.248e-27
Identity = 62/165 (37.58%), Postives = 106/165 (64.24%), Query Frame = 1
Query:  118 EPQCLKEIRELTDKHPWSAMMTAPDEAQFLSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKNNYINYHKRLIELVKVGGVIGYDNTLWGGSVVAQPDADLD 612
            + + ++  +E  ++H    M+T  ++  F  +L++++NAK T++IGVFTG S L  ALA+ D+G+++A D++ ++ +  L    KAGV HKI+ +  PA   L +LI D+    T+DFVF+DADK  Y  Y++  ++L++ GG+I  DN L  G  VA P+A+++
Sbjct:   34 QKELIQFTKENIERH---IMLTQAEQCSFFKLLIQVLNAKKTIDIGVFTGLSSLTAALAMGDEGRVVACDVSTDYTQHALKFWAKAGVDHKINLKIQPASKTLQELI-DQGEENTYDFVFIDADKTGYDTYYELSLKLIRKGGIIAIDNVLQHGR-VADPNANVE 193          
The following BLAST results are available for this feature:
BLAST of CX295539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
CMTD1_MOUSE8.560e-2839.08Catechol-O-methyltransferase domain-containing pro... [more]
CAMT2_DICDI1.907e-2738.18Probable caffeoyl-CoA O-methyltransferase 2 OS=Dic... [more]
CAMT1_DICDI4.248e-2737.58Probable caffeoyl-CoA O-methyltransferase 1 OS=Dic... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05073C08SK DroRLeaf1 Citrus clementina cDNA clone C05073C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295539 ID=CX295539; Name=CX295539; organism=Citrus clementina; type=EST; length=646bp
CGGGAAGGTCAGGAGGAAAACAAGGATCGTTACTACAAAACTCTACATGG
GAACAAGACCCTTTTACAGAGTGAAAAACTTTATGAGTATATACTTGAAA
CCAGTGTATATCCAAGAGAACCACAATGCTTGAAGGAGATCCGCGAGTTG
ACGGACAAGCATCCATGGAGCGCCATGATGACTGCACCTGATGAAGCACA
ATTTTTGAGCATGCTACTCAAGCTTATCAATGCCAAGAATACCATGGAAA
TTGGCGTTTTCACTGGTTACTCTCTCCTAGCCACTGCCCTCGCCATTCCC
GACGATGGCAAGATACTGGCCCTGGACATCACCAAGGAACACTACGAGAA
GGGTCTCCCTATAATTCAAAAAGCTGGTGTTGCCCACAAGATTGATTTCA
GAGAAGGCCCTGCTCTTCCTCTTCTTGATCAATTGATCCAAGACGAAAAA
TATCATGGGACATTCGACTTCGTCTTTGTTGATGCTGACAAGAATAACTA
CATTAATTACCACAAGAGGCTTATTGAGCTTGTGAAGGTTGGGGGAGTGA
TTGGCTACGACAACACCTTGTGGGGTGGATCTGTGGTGGCACAACCTGAT
GCCGACCTGGATGAGCTATCTAGCTGAGGATCTGTGCAGACTCACA
back to top