CX295540

Overview
NameCX295540
Unique NameCX295540
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length638
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295540 vs. ExPASy Swiss-Prot
Match: Y2239_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g23950 OS=Arabidopsis thaliana GN=At2g23950 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.987e-13
Identity = 45/116 (38.79%), Postives = 70/116 (60.34%), Query Frame = 2
Query:   29 VVGTYGYMSPEYALDGFFSVKSDVFSFGVVVLEIISGKRNTGFYNS-EQALSLLGYAWKLWQEGKALDMMDQKLHASSKPNEILKCINVGLLCVQEDPNDRPTMSDVVIMLGSEAM 373
            V GT G+++PEY   G  S K+DVF FG+++LE+I+G R   F  S  Q  ++L +  KL +E K  +++D++L  +    E+ + + V LLC Q  P  RP MS+VV ML  + +
Sbjct:  458 VRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGMRALEFGKSVSQKGAMLEWVRKLHKEMKVEELVDRELGTTYDRIEVGEMLQVALLCTQFLPAHRPKMSEVVQMLEGDGL 573          
BLAST of CX295540 vs. ExPASy Swiss-Prot
Match: RCH2_ARATH (Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.987e-13
Identity = 41/114 (35.96%), Postives = 70/114 (61.40%), Query Frame = 2
Query:   23 NRVVGTYGYMSPEYALDGFFSVKSDVFSFGVVVLEIISGKRNTGFYNSEQALSLLGYAWKLWQEGKALDMMDQKLHA--SSKPNEILKCINVGLLCVQEDPNDRPTMSDVVIML 358
            N V G+YGY++PEY      + KSDV+S+GVVVLE+++GK+        + + L+ +   + Q   +L+++D  L +   ++ +E+++ +   LLCV   P++RPTM DV  ML
Sbjct:  954 NTVAGSYGYIAPEYGYSMKITEKSDVYSYGVVVLEVLTGKQPID-PTVPEGIHLVDW---VRQNRGSLEVLDSTLRSRTEAEADEMMQVLGTALLCVNSSPDERPTMKDVAAML 1063          
BLAST of CX295540 vs. ExPASy Swiss-Prot
Match: PSKR1_ARATH (Phytosulfokine receptor 1 OS=Arabidopsis thaliana GN=PSKR1 PE=2 SV=4)

HSP 1 Score: 75.8702 bits (185), Expect = 1.987e-13
Identity = 35/110 (31.82%), Postives = 60/110 (54.55%), Query Frame = 2
Query:   29 VVGTYGYMSPEYALDGFFSVKSDVFSFGVVVLEIISGKRNTGFYNSEQALSLLGYAWKLWQEGKALDMMDQKLHASSKPNEILKCINVGLLCVQEDPNDRPTMSDVVIML 358
            +VGT GY+ PEY      + K DV+SFGVV+LE+++ KR       +    L+ +  K+  E +A ++ D  +++     E+ + + +  LC+ E+P  RPT   +V  L
Sbjct:  896 LVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTDKRPVDMCKPKGCRDLISWVVKMKHESRASEVFDPLIYSKENDKEMFRVLEIACLCLSENPKQRPTTQQLVSWL 1005          
BLAST of CX295540 vs. ExPASy Swiss-Prot
Match: WAKLA_ARATH (Wall-associated receptor kinase-like 1 OS=Arabidopsis thaliana GN=WAKL1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.595e-13
Identity = 35/106 (33.02%), Postives = 62/106 (58.49%), Query Frame = 2
Query:   29 VVGTYGYMSPEYALDGFFSVKSDVFSFGVVVLEIISGKRNTGFYNSEQALSLLGYAWKLWQEGKALDMMDQKLHASSKPNEILKCINVGLLCVQEDPNDRPTMSDV 346
            V GT+GYM PEY L   ++ KSDV+SFGVV++E+I+G++      SE+   L  +  +  +E + +D++D ++   SK  +++    +   C+     +RP M +V
Sbjct:  590 VAGTFGYMDPEYFLSSQYTHKSDVYSFGVVLVELITGEKPLSRVRSEEGRGLATHFLEAMKENRVIDIIDIRIKDESKLEQVMAVAKLARKCLNRKGKNRPNMKEV 695          
BLAST of CX295540 vs. ExPASy Swiss-Prot
Match: PSYR1_ARATH (Tyrosine-sulfated glycopeptide receptor 1 OS=Arabidopsis thaliana GN=PSYR1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.595e-13
Identity = 34/107 (31.78%), Postives = 63/107 (58.88%), Query Frame = 2
Query:   29 VVGTYGYMSPEYALDGFFSVKSDVFSFGVVVLEIISGKRNTGFYNSEQALSLLGYAWKLWQEGKALDMMDQKLHASSKPNEILKCINVGLLCVQEDPNDRPTMSDVV 349
            +VGT GY+ PEY      +++ DV+SFGVV+LE+++GKR    +  + +  L+ +   + ++GK  ++ D  L  S     +L+ +++  +CV ++P  RP +  VV
Sbjct:  965 LVGTLGYIPPEYGQAWVATLRGDVYSFGVVMLELLTGKRPMEVFRPKMSRELVAWVHTMKRDGKPEEVFDTLLRESGNEEAMLRVLDIACMCVNQNPMKRPNIQQVV 1071          
BLAST of CX295540 vs. ExPASy Swiss-Prot
Match: Y2296_ARATH (Probable receptor-like protein kinase At2g42960 OS=Arabidopsis thaliana GN=At2g42960 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.427e-13
Identity = 38/114 (33.33%), Postives = 66/114 (57.89%), Query Frame = 2
Query:   26 RVVGTYGYMSPEYALDGFFSVKSDVFSFGVVVLEIISGKRNTGFYNSEQALSLLGYAWKLWQEGKALDMMDQKLHASSKPNEILKCINVGLLCVQEDPNDRPTMSDVVIMLGSE 367
            RV+GT+GY++PEYA  G  + KSD++SFGV++LE I+G+    +      ++L+ +   +    +A +++D +L      + + + + V L CV  +   RP MS V  ML S+
Sbjct:  344 RVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAITGRDPVDYGRPANEVNLVEWLKMMVGTRRAEEVVDPRLEPRPSKSALKRALLVSLRCVDPEAEKRPRMSQVARMLESD 457          
BLAST of CX295540 vs. ExPASy Swiss-Prot
Match: NAK_ARATH (Probable serine/threonine-protein kinase NAK OS=Arabidopsis thaliana GN=NAK PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 4.427e-13
Identity = 43/109 (39.45%), Postives = 62/109 (56.88%), Query Frame = 2
Query:   26 RVVGTYGYMSPEYALDGFFSVKSDVFSFGVVVLEIISGKRNTGFYNSEQALSLLGYAWK-LWQEGKALDMMDQKLHASSKPNEILKCINVGLLCVQEDPNDRPTMSDVV 349
            RV+GT GY +PEY   G  SVKSDV+SFGVV+LE++SG+R           +L+ +A   L  + + L +MD +L         LK   + L C+  D   RPTM+++V
Sbjct:  239 RVMGTQGYAAPEYLATGHLSVKSDVYSFGVVLLELLSGRRAIDKNQPVGEHNLVDWARPYLTNKRRLLRVMDPRLQGQYSLTRALKIAVLALDCISIDAKSRPTMNEIV 347          
BLAST of CX295540 vs. ExPASy Swiss-Prot
Match: WAKLB_ARATH (Wall-associated receptor kinase-like 2 OS=Arabidopsis thaliana GN=WAKL2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.782e-13
Identity = 35/111 (31.53%), Postives = 64/111 (57.66%), Query Frame = 2
Query:   26 RVVGTYGYMSPEYALDGFFSVKSDVFSFGVVVLEIISGKRNTGFYNSEQALSLLGYAWKLWQEGKALDMMDQKLHASSKPNEILKCINVGLLCVQEDPNDRPTMSDVVIML 358
            +V GT+GY+ PEY     F+ KSDV+SFGVV++E+++G++ +    SE+   L  +  +  +E + LD++D ++      ++++   N+   C+      RP M +V I L
Sbjct:  576 QVAGTFGYVDPEYFQSSKFTEKSDVYSFGVVLVELLTGEKPSSRVRSEENRGLAAHFVEAVKENRVLDIVDDRIKDECNMDQVMSVANLARRCLNRKGKKRPNMREVSIEL 686          
BLAST of CX295540 vs. ExPASy Swiss-Prot
Match: Y1755_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g07550 OS=Arabidopsis thaliana GN=At1g07550 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.552e-13
Identity = 44/141 (31.21%), Postives = 72/141 (51.06%), Query Frame = 2
Query:   20 PNRVVGTYGYMSPEYALDGFFSVKSDVFSFGVVVLEIISGKRNTGFYNSEQALSLLGYAWKLWQEGKALDMMDQKLHASSKPNEILKCINVGLLCVQEDPNDRPTMSDVVIMLG-----------SEAMNLATPKRPAFVI 409
            P  V GT+GY+ PEY      S+KSDV+SFGVV+LEIISG+       S +  +++ +   + + G    ++D  LH     +   K + + + CV     +RP MS VV +L            S+ ++L++P   + V+
Sbjct:  717 PTVVAGTFGYLDPEYHKTSLLSMKSDVYSFGVVLLEIISGQDVIDL--SRENCNIVEWTSFILENGDIESIVDPNLHQDYDTSSAWKVVELAMSCVNRTSKERPNMSQVVHVLNECLETCEKWRKSQEVDLSSPLELSIVV 855          
BLAST of CX295540 vs. ExPASy Swiss-Prot
Match: Y1124_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g12460 OS=Arabidopsis thaliana GN=At1g12460 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.552e-13
Identity = 41/108 (37.96%), Postives = 66/108 (61.11%), Query Frame = 2
Query:   44 GYMSPEYALDGF-FSVKSDVFSFGVVVLEIISGKRNTGFYNSEQALSLLGYAWKLWQEGKALDMMDQKLHASSKPNEILKCINVGLLCVQEDPNDRPTMSDVVIMLGS 364
            GY++PE A      S K DV+S+GVV+LE+++G++     +  Q L L  Y   L + G A D  D++L    + NE+++ + +GLLC  E+P  RP+M++VV +L S
Sbjct:  769 GYIAPELAQQSLRASEKCDVYSYGVVLLELVTGRKPVESPSENQVLILRDYVRDLLETGSASDCFDRRLR-EFEENELIQVMKLGLLCTSENPLKRPSMAEVVQVLES 875          
The following BLAST results are available for this feature:
BLAST of CX295540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
Y2239_ARATH1.987e-1338.79Probable LRR receptor-like serine/threonine-protei... [more]
RCH2_ARATH1.987e-1335.96Receptor-like protein kinase 2 OS=Arabidopsis thal... [more]
PSKR1_ARATH1.987e-1331.82Phytosulfokine receptor 1 OS=Arabidopsis thaliana ... [more]
WAKLA_ARATH2.595e-1333.02Wall-associated receptor kinase-like 1 OS=Arabidop... [more]
PSYR1_ARATH2.595e-1331.78Tyrosine-sulfated glycopeptide receptor 1 OS=Arabi... [more]
Y2296_ARATH4.427e-1333.33Probable receptor-like protein kinase At2g42960 OS... [more]
NAK_ARATH4.427e-1339.45Probable serine/threonine-protein kinase NAK OS=Ar... [more]
WAKLB_ARATH5.782e-1331.53Wall-associated receptor kinase-like 2 OS=Arabidop... [more]
Y1755_ARATH7.552e-1331.21Probable LRR receptor-like serine/threonine-protei... [more]
Y1124_ARATH7.552e-1337.96Probable LRR receptor-like serine/threonine-protei... [more]

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Properties
Property NameValue
Genbank descriptionC05073C09SK DroRLeaf1 Citrus clementina cDNA clone C05073C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295540 ID=CX295540; Name=CX295540; organism=Citrus clementina; type=EST; length=638bp
GATTCGGCCGAGGGGGAACCCAAATCGAGTGGTTGGAACTTATGGCTATA
TGTCTCCAGAGTATGCATTAGATGGATTTTTCTCAGTCAAGTCCGATGTT
TTCAGCTTTGGCGTAGTTGTGCTTGAGATTATCAGTGGAAAAAGAAACAC
TGGATTTTATAATTCAGAACAAGCTTTGAGCCTTCTAGGTTACGCGTGGA
AATTGTGGCAAGAAGGCAAGGCATTAGATATGATGGATCAGAAACTACAT
GCCAGCTCCAAACCAAATGAAATCTTAAAGTGCATAAATGTTGGGCTCTT
ATGTGTGCAGGAAGATCCAAACGATCGTCCCACGATGTCTGATGTTGTTA
TCATGCTTGGCAGTGAAGCTATGAACCTTGCAACTCCTAAACGACCAGCC
TTTGTCATCAGGAGAGGATCTTCTAGCTCGGCATCTTCTTCTAATAAACC
AGAATCAAACAACGAACTAACAAATACTTTAGAATGTAGATAATCAGGGA
GAATTCTTAATAAGTTTGTCCTCCTTTTGTTAATCCTGCACAATCAGCTT
ATTGTACATCATCAAATGTTGGTTCTTATATCAGAAGTTGCCTGCTATGT
ATCCTTTATTATTAGGTACTTCTCTTCAGGAAAAAAAA
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