CX295540

Overview
NameCX295540
Unique NameCX295540
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length638
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295540 vs. ExPASy Swiss-Prot
Match: Y5659_ARATH (Probable inactive receptor kinase At5g16590 OS=Arabidopsis thaliana GN=At5g16590 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.090e-11
Identity = 39/131 (29.77%), Postives = 71/131 (54.20%), Query Frame = 2
Query:    2 IRPRGNPNRVVGTYGYMSPEYALDGFFSVKSDVFSFGVVVLEIISGKRNTGFYNSEQALSLLGYAWKLWQEGKALDMMDQKL--HASSKPNEILKCINVGLLCVQEDPNDRPTMSDVVIMLGSEAMNLATP 388
            I P   PNR+ G   Y +PE       S K+DV+SFGV++LE+++GK  T     E+ + L  +   + ++    D+ D +L  + S     +++ +N+G+ C  + P+ RPTM +V  ++   + + A+P
Sbjct:  493 ISPTSTPNRIDG---YRAPEVTDARKISQKADVYSFGVLILELLTGKSPTHQQLHEEGVDLPRWVSSITEQQSPSDVFDPELTRYQSDSNENMIRLLNIGISCTTQYPDSRPTMPEVTRLIEEVSRSPASP 620          
BLAST of CX295540 vs. ExPASy Swiss-Prot
Match: Y5148_ARATH (Probable leucine-rich repeat receptor-like protein kinase At5g61480 OS=Arabidopsis thaliana GN=At5g61480 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.090e-11
Identity = 43/124 (34.68%), Postives = 67/124 (54.03%), Query Frame = 2
Query:   29 VVGTYGYMSPEYALDGFFSVKSDVFSFGVVVLEIISGKRNTGFYNSEQALSLLGYAWKLWQEGKALDMMDQKLHASSK--PNEILKCINVGLLCVQEDPNDRPTMSDVVIMLGSEAMNLATPKR 394
            V G+YGY++PEYA       KSD++S+GV++LEII+GKR+      E    +     KL  +    +++D+ +  S      E+ + + + LLC    P DRP M DV+++L       A PKR
Sbjct:  886 VAGSYGYIAPEYAYTLQVDKKSDIYSYGVILLEIITGKRSVEPEFGEGNSIVDWVRSKLKTKEDVEEVLDKSMGRSCSLIREEMKQMLRIALLCTSRSPTDRPPMRDVLLILQE-----AKPKR 1004          
BLAST of CX295540 vs. ExPASy Swiss-Prot
Match: WAKLP_ARATH (Wall-associated receptor kinase-like 15 OS=Arabidopsis thaliana GN=WAKL15 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.090e-11
Identity = 40/104 (38.46%), Postives = 64/104 (61.54%), Query Frame = 2
Query:   35 GTYGYMSPEYALDGFFSVKSDVFSFGVVVLEIISGKRNTGFYNSEQALSLLGYAWKLWQEGKALDMMDQ--KLHASSKPNEILKCINV-GLLCVQEDPNDRPTM 337
            GT GY+ PEY L+   + KSDV+SFGVV+ E+++ K+   F   E+ ++L+ +  K  +EG+ +D++D    + A+ K  E +K + V   LCV+E    RPTM
Sbjct:  522 GTLGYLDPEYYLNFQLTDKSDVYSFGVVLFELLTCKKAIDFNREEEDVNLVVFVRKALKEGRLMDVIDPVIGIGATEKEIESMKALGVLAELCVKETRQCRPTM 625          
BLAST of CX295540 vs. ExPASy Swiss-Prot
Match: WAKLM_ARATH (Wall-associated receptor kinase-like 17 OS=Arabidopsis thaliana GN=WAKL17 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.424e-11
Identity = 34/107 (31.78%), Postives = 62/107 (57.94%), Query Frame = 2
Query:   29 VVGTYGYMSPEYALDGFFSVKSDVFSFGVVVLEIISG-KRNTGFYNSEQALSLLGYAWKLWQEGKALDMMDQKLHASSKPNEILKCINVGLLCVQEDPNDRPTMSDV 346
            + GT GY+ PEY     ++ KSDV+SFGV++ E+I+G K      N+++ ++L  +     +E +  D+MD ++   SKP +++   N+ + C+     +RP M +V
Sbjct:  606 ISGTVGYVDPEYYRSSQYTEKSDVYSFGVILAELITGDKPVIMVQNTQEIIALAEHFRVAMKERRLSDIMDARIRDDSKPEQVMAVANLAMKCLSSRGRNRPNMREV 712          
BLAST of CX295540 vs. ExPASy Swiss-Prot
Match: WAKLD_ARATH (Wall-associated receptor kinase-like 4 OS=Arabidopsis thaliana GN=WAKL4 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.424e-11
Identity = 34/111 (30.63%), Postives = 61/111 (54.95%), Query Frame = 2
Query:   26 RVVGTYGYMSPEYALDGFFSVKSDVFSFGVVVLEIISGKRNTGFYNSEQALSLLGYAWKLWQEGKALDMMDQKLHASSKPNEILKCINVGLLCVQEDPNDRPTMSDVVIML 358
            +V GT+GY+ PEY     F+ KSDV+SFGVV++E+I+GK  +    SE+      +     +E + LD++D+++      ++++    +   C+      RP M +V + L
Sbjct:  584 QVAGTFGYVDPEYFQSSKFTDKSDVYSFGVVLVELITGKNPSSRVQSEENRGFAAHFVAAVKENRFLDIVDERIKDECNLDQVMAVAKLAKRCLNRKGKKRPNMREVSVEL 694          
BLAST of CX295540 vs. ExPASy Swiss-Prot
Match: CX32_ARATH (Probable serine/threonine-protein kinase Cx32, chloroplastic OS=Arabidopsis thaliana GN=At4g35600 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.424e-11
Identity = 41/116 (35.34%), Postives = 64/116 (55.17%), Query Frame = 2
Query:   26 RVVGTYGYMSPEYALDGFFSVKSDVFSFGVVVLEIISG--KRNTGFYNSEQALSLLGYAW---KLWQEGKALDMMDQKLHASSKPNEILKCINVGLLCVQEDPNDRPTMSDVVIML 358
            R++GTYGY +PEY   G   VKSDVF+FGVV+LEI++G    NT     +++L      W   +L  + +   +MD+ +          +   + L C++ DP +RP M +VV +L
Sbjct:  254 RIMGTYGYAAPEYMATGHLYVKSDVFAFGVVLLEIMTGLTAHNTKRPRGQESL----VDWLRPELSNKHRVKQIMDKGIKGQYTTKVATEMARITLSCIEPDPKNRPHMKEVVEVL 365          
BLAST of CX295540 vs. ExPASy Swiss-Prot
Match: Y4291_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g29180 OS=Arabidopsis thaliana GN=At4g29180 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.860e-11
Identity = 35/107 (32.71%), Postives = 61/107 (57.01%), Query Frame = 2
Query:   29 VVGTYGYMSPEYALDGFFSVKSDVFSFGVVVLEIISGKRNTGFYNSEQALSLLGYAWKLWQEGKALDMMDQKLHASSKPNEILKCINVGLLCVQEDPNDRPTMSDVV 349
            V+GT GY+ PEY      + KSDV+SFG+V+LE+I+GKR+    +  + ++++ Y     + G    ++D +LH     N   K + V + CV++   +RP  + +V
Sbjct:  741 VMGTPGYVDPEYYNTFKLNEKSDVYSFGIVLLELITGKRSIMKTDDGEKMNVVHYVEPFLKMGDIDGVVDPRLHGDFSSNSAWKFVEVAMSCVRDRGTNRPNTNQIV 847          
BLAST of CX295540 vs. ExPASy Swiss-Prot
Match: Y1341_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g34110 OS=Arabidopsis thaliana GN=At1g34110 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.860e-11
Identity = 40/114 (35.09%), Postives = 63/114 (55.26%), Query Frame = 2
Query:   23 NRVVGTYGYMSPEYALDGFFSVKSDVFSFGVVVLEIISGKRNTGFYNSEQALSLLGYAWKLWQEGKALDMMDQKLHA--SSKPNEILKCINVGLLCVQEDPNDRPTMSDVVIML 358
            +RV G+YGY++PEY      + KSDV+S+GVV+LEI+SG+        +    +     K+     AL ++D KL         E+L+ + + + CV   P +RPTM +VV +L
Sbjct:  936 SRVAGSYGYIAPEYGYTMNITEKSDVYSYGVVLLEILSGRSAVEPQIGDGLHIVEWVKKKMGTFEPALSVLDVKLQGLPDQIVQEMLQTLGIAMFCVNPSPVERPTMKEVVTLL 1049          
BLAST of CX295540 vs. ExPASy Swiss-Prot
Match: WAK5_ARATH (Wall-associated receptor kinase 5 OS=Arabidopsis thaliana GN=WAK5 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.860e-11
Identity = 38/121 (31.40%), Postives = 66/121 (54.55%), Query Frame = 2
Query:   29 VVGTYGYMSPEYALDGFFSVKSDVFSFGVVVLEIISGKRNTGFYNSEQALSLLGYAWKLWQEGKALDMMDQKLHASSKPNEILKCINVGLLCVQEDPNDRPTMSDVVIMLGSEAMNLATPK 391
            V GT GY+ PEY   G  + KSDV+SFGVV++E++SG++   F   + +  L+ Y     +E +  +++D ++       EI +   + + C +    +RP+M +V   L  EA+ + T K
Sbjct:  569 VQGTLGYLDPEYYNTGLLNEKSDVYSFGVVLMELLSGEKALCFERPQSSKHLVSYFVSAMKENRLHEIIDGQVMNEYNQREIQESARIAVECTRIMGEERPSMKEVAAEL--EALRVKTTK 687          
BLAST of CX295540 vs. ExPASy Swiss-Prot
Match: RPK2_ARATH (LRR receptor-like serine/threonine-protein kinase RPK2 OS=Arabidopsis thaliana GN=RPK2 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.860e-11
Identity = 34/109 (31.19%), Postives = 68/109 (62.39%), Query Frame = 2
Query:   29 VVGTYGYMSPEYALDGFFSVKSDVFSFGVVVLEIISGKR--NTGFYNSEQALSLLGYAWKLWQEGKALDMMDQKLHASSKPNEILKCINVGLLCVQEDPNDRPTMSDVV 349
            V GT+GY++PEYA+    S K+DV+S+GVV+LE++S K+  +  F +     +++ +A  L ++G+A +     L  +   +++++ +++ ++C  +  + RPTM  VV
Sbjct: 1032 VAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFVSYGNGFNIVQWACMLLRQGRAKEFFTAGLWDAGPHDDLVEVLHLAVVCTVDSLSTRPTMKQVV 1140          
The following BLAST results are available for this feature:
BLAST of CX295540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
Y5659_ARATH1.090e-1129.77Probable inactive receptor kinase At5g16590 OS=Ara... [more]
Y5148_ARATH1.090e-1134.68Probable leucine-rich repeat receptor-like protein... [more]
WAKLP_ARATH1.090e-1138.46Wall-associated receptor kinase-like 15 OS=Arabido... [more]
WAKLM_ARATH1.424e-1131.78Wall-associated receptor kinase-like 17 OS=Arabido... [more]
WAKLD_ARATH1.424e-1130.63Wall-associated receptor kinase-like 4 OS=Arabidop... [more]
CX32_ARATH1.424e-1135.34Probable serine/threonine-protein kinase Cx32, chl... [more]
Y4291_ARATH1.860e-1132.71Probable LRR receptor-like serine/threonine-protei... [more]
Y1341_ARATH1.860e-1135.09Probable LRR receptor-like serine/threonine-protei... [more]
WAK5_ARATH1.860e-1131.40Wall-associated receptor kinase 5 OS=Arabidopsis t... [more]
RPK2_ARATH1.860e-1131.19LRR receptor-like serine/threonine-protein kinase ... [more]

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Properties
Property NameValue
Genbank descriptionC05073C09SK DroRLeaf1 Citrus clementina cDNA clone C05073C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295540 ID=CX295540; Name=CX295540; organism=Citrus clementina; type=EST; length=638bp
GATTCGGCCGAGGGGGAACCCAAATCGAGTGGTTGGAACTTATGGCTATA
TGTCTCCAGAGTATGCATTAGATGGATTTTTCTCAGTCAAGTCCGATGTT
TTCAGCTTTGGCGTAGTTGTGCTTGAGATTATCAGTGGAAAAAGAAACAC
TGGATTTTATAATTCAGAACAAGCTTTGAGCCTTCTAGGTTACGCGTGGA
AATTGTGGCAAGAAGGCAAGGCATTAGATATGATGGATCAGAAACTACAT
GCCAGCTCCAAACCAAATGAAATCTTAAAGTGCATAAATGTTGGGCTCTT
ATGTGTGCAGGAAGATCCAAACGATCGTCCCACGATGTCTGATGTTGTTA
TCATGCTTGGCAGTGAAGCTATGAACCTTGCAACTCCTAAACGACCAGCC
TTTGTCATCAGGAGAGGATCTTCTAGCTCGGCATCTTCTTCTAATAAACC
AGAATCAAACAACGAACTAACAAATACTTTAGAATGTAGATAATCAGGGA
GAATTCTTAATAAGTTTGTCCTCCTTTTGTTAATCCTGCACAATCAGCTT
ATTGTACATCATCAAATGTTGGTTCTTATATCAGAAGTTGCCTGCTATGT
ATCCTTTATTATTAGGTACTTCTCTTCAGGAAAAAAAA
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