CX295545

Overview
NameCX295545
Unique NameCX295545
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length579
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6597 contig Ccv1_Contig6597:328..904. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295545 vs. ExPASy Swiss-Prot
Match: Y1634_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g63430 OS=Arabidopsis thaliana GN=At1g63430 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.402e-11
Identity = 35/90 (38.89%), Postives = 51/90 (56.67%), Query Frame = 2
Query:  128 GSFPPQLSQLASLQVLDLYNNNMTGDLPLAVTQLRNLRHLHLGGNFFSGQIPPEYGIWEFLEYLAVSGNELGGKIPGEIGNLTKLQQLYI 397
            G   P+L Q+  LQ L L+ N + G +P  +  L+NL+ L LG N   G IP E G    +  + +  N L GK+P E+GNL  L++L+I
Sbjct:   83 GFLAPELGQITYLQELILHGNILIGTIPKEIGNLKNLKILDLGNNHLMGPIPAEIGSLSGIMIINLQSNGLTGKLPAELGNLKYLRELHI 172          
BLAST of CX295545 vs. ExPASy Swiss-Prot
Match: RPKL_ARATH (Receptor protein kinase-like protein At4g34220 OS=Arabidopsis thaliana GN=At4g34220 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.402e-11
Identity = 43/144 (29.86%), Postives = 67/144 (46.53%), Query Frame = 2
Query:   26 NLSVAANQLSGPIPPEISAXXXXXXXXXXXXVFNGSFPPQLSQLASLQVLDLYNNNMTGDLPLAVTQLRNLRHLHLGGNFFSGQIPPEYGIWEFLEYLAVSGNELGGKIPG--EIGNLTKLQQLYIGYYNSYTGGLPPEIGNLS 451
            +L +    L G I P++ +             FNGS P  +     LQ + L +NN++GDLP +V  + NL+ L+L  N F+G+IP    + + L  +++S N   G IP   E   +  L        N   G LP ++G  S
Sbjct:   83 SLVLPNKHLLGSITPDLFSIPYLRILDLSSNFFNGSLPDSVFNATELQSISLGSNNLSGDLPKSVNSVTNLQLLNLSANAFTGEIPLNISLLKNLTVVSLSKNTFSGDIPSGFEAAQILDLSS------NLLNGSLPKDLGGKS 220          
BLAST of CX295545 vs. ExPASy Swiss-Prot
Match: Y1699_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g69990 OS=Arabidopsis thaliana GN=At1g69990 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.508e-11
Identity = 41/114 (35.96%), Postives = 63/114 (55.26%), Query Frame = 2
Query:  173 LDLYNNNMTGDLPLAVTQLRNLRHLHLGGNFFSGQIPPEYGIW-EFLEYLAVSGNELGGKIPGEIGNLTKLQQLYIGYYNSYTGGLPPEIGNLSSLVRFDAANCGLSGEIPTDI 511
            L L +  ++G +P ++   R+L+ L L  N FSG IP +   W  +L  L +SGN+L G IP +I +   L  L +   N  TG +P E+  L+ L R   A+  LSG IP+++
Sbjct:   70 LQLQSMQLSGQIPESLKLCRSLQSLDLSFNDFSGLIPSQICSWLPYLVTLDLSGNKLSGSIPSQIVDCKFLNSLALNQ-NKLTGSIPSELTRLNRLQRLSLADNDLSGSIPSEL 182          
BLAST of CX295545 vs. ExPASy Swiss-Prot
Match: FEI2_ARATH (LRR receptor-like serine/threonine-protein kinase FEI 2 OS=Arabidopsis thaliana GN=FEI2 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.508e-11
Identity = 37/87 (42.53%), Postives = 51/87 (58.62%), Query Frame = 2
Query:  272 GQIPPEYGIWEFLEYLAVSGNELGGKIPGEIGNLTKLQQLYIGYYNSY-TGGLPPEIGNLSSLVRFDAANCGLSGEIPTDIGRLQNL 529
            G +PPE G  + L  L +  N L   IP  +GN T L+ +Y+   N+Y TG +P EIGNLS L   D +N  L+G IP  +G+L+ L
Sbjct:   87 GPLPPELGKLDQLRLLMLHNNALYQSIPASLGNCTALEGIYL--QNNYITGTIPSEIGNLSGLKNLDLSNNNLNGAIPASLGQLKRL 171          
BLAST of CX295545 vs. ExPASy Swiss-Prot
Match: YG015_MOUSE (Leucine-rich repeat and death domain-containing protein LOC401387 homolog OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.806e-11
Identity = 59/177 (33.33%), Postives = 92/177 (51.98%), Query Frame = 2
Query:   20 LQNLSVAANQLSGPIPPEISAXXXXXXXXXXXXVFNGSFPPQLSQLASLQVLDLYNNNMTGDLPLAVTQLRNLRHLHLGGNFFSGQIPPEYGIWEFLEYLAVSGNELGGK----IPGEIGNLTKLQQLYIGYYNSYTGGLPPEIGNLSSLVRFDAANCGLSGEIPTDIGRLQNLDTL 538
            L+ L +A NQ+   IP  ISA             F  SFP +L  L +L+VLD+  N +   +PL +++L+ ++ LHL  N F+   P E    + LE L +S  +  GK    +P E+ ++T+L+ L I   N+    +P  IG L SLV F A+N  +S  +P+    L+ L +L
Sbjct:  529 LEYLDLAKNQIM-TIPSCISAMVSLHVLILSDNKFE-SFPKELCSLKNLRVLDISENKLQ-KIPLEISKLKRIQKLHLSNNIFT-NFPVELCQRQTLEELNIS--QTSGKKVTRLPEEVSHMTQLKILNIS--NNAIKDIPKNIGELRSLVSFYASNNQIS-SLPSSFLSLEVLQSL 696          
BLAST of CX295545 vs. ExPASy Swiss-Prot
Match: Y5720_ARATH (Probable inactive receptor kinase At5g67200 OS=Arabidopsis thaliana GN=At5g67200 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.806e-11
Identity = 46/119 (38.66%), Postives = 63/119 (52.94%), Query Frame = 2
Query:  146 LSQLASLQVLDLYNNNMTGDLPLAVTQLRNLRHLHLGGNFFSGQIPPEYGIWEFLEYLAVSGNELGGKIPGEIGNLTKLQQLYIGYYNSYTGGLPPEIGNLSSLVRFDAANCGLSGEIP 502
            LS+L  L+VL L NN++ G +P  ++ L NL+ L L  N FSG  PP       L  L++S N   G IP EI  L +L  L +  +N + G LP    N S L  F+ +   L+G IP
Sbjct:   93 LSRLDQLRVLSLENNSLFGPIP-DLSHLVNLKSLFLSRNQFSGAFPPSILSLHRLMILSISHNNFSGSIPSEINALDRLTSLNLD-FNRFNGTLPSL--NQSFLTSFNVSGNNLTGVIP 207          
The following BLAST results are available for this feature:
BLAST of CX295545 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
Y1634_ARATH4.402e-1138.89Probable LRR receptor-like serine/threonine-protei... [more]
RPKL_ARATH4.402e-1129.86Receptor protein kinase-like protein At4g34220 OS=... [more]
Y1699_ARATH7.508e-1135.96Probable LRR receptor-like serine/threonine-protei... [more]
FEI2_ARATH7.508e-1142.53LRR receptor-like serine/threonine-protein kinase ... [more]
YG015_MOUSE9.806e-1133.33Leucine-rich repeat and death domain-containing pr... [more]
Y5720_ARATH9.806e-1138.66Probable inactive receptor kinase At5g67200 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionC05073D02SK DroRLeaf1 Citrus clementina cDNA clone C05073D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295545 ID=CX295545; Name=CX295545; organism=Citrus clementina; type=EST; length=579bp
AGGGGCCCACCTCCGCTTCCTCCAGAACCTCTCCGTCGCCGCCAACCAGC
TCTCCGGCCCCATTCCCCCGGAGATCTCCGCCCTCTCCTCTCTCCGCCTC
CTGAACCTCTCCAACAATGTCTTCAACGGCTCATTCCCACCCCAGCTGTC
ACAGCTTGCTAGCTTACAAGTACTCGACTTGTATAACAACAACATGACCG
GTGACTTGCCGCTTGCTGTTACCCAGCTGAGAAACTTGCGCCACTTGCAT
CTCGGTGGCAACTTTTTCTCCGGTCAGATCCCGCCGGAGTACGGCATCTG
GGAGTTTCTGGAATACTTGGCGGTTTCCGGTAACGAACTCGGAGGCAAAA
TCCCCGGCGAAATCGGTAACCTAACGAAGCTGCAGCAGCTGTACATTGGT
TATTACAACAGCTACACCGGCGGTTTGCCTCCGGAAATCGGAAACTTATC
GTCGTTGGTCCGATTCGACGCTGCCAACTGTGGGCTTTCTGGTGAAATAC
CGACCGATATAGGGAGGTTGCAAAACTTGGACACTCTGTTCTTCAGTGAA
CGCTCTGCTGGCCATTACACAACTGGGTA
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