CX295546

Overview
NameCX295546
Unique NameCX295546
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295546 vs. ExPASy Swiss-Prot
Match: XTH26_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 26 OS=Arabidopsis thaliana GN=XTH26 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.549e-17
Identity = 49/160 (30.63%), Postives = 79/160 (49.38%), Query Frame = 3
Query:    3 EERYQLWFHPTKQFHRYSILWTSNNIIFYVDEVPIREVVRSTAMGGDFPSKP-MSLYTTIWDASNWATSGGKAKVNYKYAPFTSEFKDFVLEGCPVDPIEQVPSSNCQDTDSR---LAEKGLSVITPAGXXXXXXXXXXYIYYSYCYDTIRYP-VPLPEC 467
            E++++ WF+PT  FH Y+I W  + ++++VD  PIR      + G  +P+K  M ++ ++W+A +WAT GG+ K N+  APF +E + +    C       V    C D   R         S +T +           ++ Y YC DT R+  V  PEC
Sbjct:  130 EQQFRPWFNPTNGFHNYTIHWNPSEVVWFVDGTPIRVFRNYESEGIAYPNKQGMKVFASLWNAEDWATQGGRVKTNWTLAPFVAEGRRYKARACLWK--GSVSIKQCVDPTIRSNWWTSPSFSQLTASQLTKMQKIRDGFMIYDYCKDTNRFKGVMPPEC 287          
BLAST of CX295546 vs. ExPASy Swiss-Prot
Match: XTH11_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 11 OS=Arabidopsis thaliana GN=XTH11 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.448e-12
Identity = 44/155 (28.39%), Postives = 66/155 (42.58%), Query Frame = 3
Query:    3 EERYQLWFHPTKQFHRYSILWTSNNIIFYVDEVPIREVVRSTAMGGDFPSKPMSLYTTIWDASNWATSGGKAKVNYKYAPFTSEFKDFVLEGCPVDPIEQVPSSNCQDTDSRLAEKGLSVITPAGXXXXXXXXXXYIYYSYCYDTIRYPVPLPEC 467
            ++R++LWF PTK +H YS LW  N ++FYVD+ PIR           +   P   Y ++       +    + ++ K  P+ ++F+   +EGC     E +    C D       K LS                Y+ Y YC D  RYP    EC
Sbjct:  125 DQRFRLWFDPTKDYHSYSFLWNPNQLVFYVDDTPIRV----------YSKNPDVYYPSVQTMFLMGSVQNGSIIDPKQMPYIAKFQASKIEGCKT---EFMGIDKCTDPKFWWNRKQLS---SKEKTLYLNARKTYLDYDYCSDRQRYPKVPQEC 263          
The following BLAST results are available for this feature:
BLAST of CX295546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
XTH26_ARATH1.549e-1730.63Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH11_ARATH7.448e-1228.39Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionC05073D03SK DroRLeaf1 Citrus clementina cDNA clone C05073D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295546 ID=CX295546; Name=CX295546; organism=Citrus clementina; type=EST; length=694bp
GGGAAGAGAGATACCAGCTTTGGTTTCATCCCACGAAGCAATTTCATAGA
TATAGCATTCTTTGGACAAGCAACAACATTATATTCTATGTGGATGAAGT
ACCAATAAGGGAAGTCGTGCGCTCAACGGCAATGGGTGGAGATTTCCCAT
CAAAGCCAATGTCATTGTACACAACAATTTGGGATGCCTCAAATTGGGCC
ACATCAGGTGGCAAAGCCAAAGTTAATTACAAGTACGCACCATTCACTTC
TGAATTTAAAGACTTTGTGTTAGAGGGCTGCCCGGTTGATCCCATTGAGC
AAGTCCCCTCCTCCAACTGCCAAGACACCGATTCCCGGCTTGCCGAGAAA
GGCCTCTCCGTCATCACTCCGGCCGGGAGACGGGCCATGCGTAGATTCCG
GGAACGTTACATATACTATTCATATTGTTATGACACAATACGATACCCCG
TGCCATTACCCGAATGTGTTCTTGTTCCATCAGAACGACAACGTTTTAAA
GACACCGGTAGGTTGAAATTCGGCGGCAGCCATAAGAGTCATAGACATAG
GTCGAGGCGGCAGCCGGGAGCTTCAAATTCCGAGGATCCGGACATGTAAA
TTAATTTATTGTGGTGGTGTTTTTATGTTCATGATTATTTTTTTGTTTTT
TTTGTTTTTTTGTTTTAACGTATAGCTTTGTTTTGTGATTAGAA
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