CX295558

Overview
NameCX295558
Unique NameCX295558
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295558 vs. ExPASy Swiss-Prot
Match: WAKLD_ARATH (Wall-associated receptor kinase-like 4 OS=Arabidopsis thaliana GN=WAKL4 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.631e-11
Identity = 63/233 (27.04%), Postives = 90/233 (38.63%), Query Frame = 2
Query:   35 IAKAPPTPHLTKPNCPYSCGNNVTIPFPFGI-GENCYFDQRYAIDCR--SNKPILRSINLEVLEFLLEKSTMRVNQSVIR-------------SCQDKTKEPSFVNLEKLPFYFSYYDNIFSGIGCNNLASMSSADHDFILGGCFSICDPRNKTD----DDSCNGIACCKAGVPWALKXXXXXXXXXXXXXXXXQEEGKCKYAFMVEKEWFESNFKSAEAVQDWKSVPVILDW 673
            ++ A   P+L    C   CG  ++IPFPFGI G+ CY +  Y + C   ++ P L  IN E++   L   T   +  V+              + Q  T +P  V  +  P YF    N+   +GCN  A M       I  GC S CD RN +     +  C+G  CC+  +P                      EG CK AF+   ++   N    E         V L W
Sbjct:   23 VSSARKPPYL----CNRVCGG-ISIPFPFGIGGKECYLNPWYEVVCNTTTSVPFLSRINRELVNIYLPDPTEYYSNGVVHIKGPVTSSGCSTGTSQPLTPQPLNVAGQGSP-YFLTDKNLLMAVGCNVKAVMMDVKSQII--GCESSCDERNSSSQVVRNKICSGNKCCQTRIPEG--QPQVIGVNIEIPENKNTTEGGCKVAFLTSNKYSSLNVTEPEEFHSDGYAVVELGW 245          
BLAST of CX295558 vs. ExPASy Swiss-Prot
Match: WAK3_ARATH (Wall-associated receptor kinase 3 OS=Arabidopsis thaliana GN=WAK3 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.631e-11
Identity = 60/225 (26.67%), Postives = 101/225 (44.89%), Query Frame = 2
Query:   59 HLTKPNCPYSCGNNVTIPFPFGIGENCYF--DQRYAIDCRSNKPILRSINLEVLEFLLEKSTMRVNQSVIRSCQDKTKEPSFVNL-EKLPFYFSY-YDNIFSGIGCNNLASMSSADHDFILGGCFSICDPRNKTDDDSCNGIACCKA---GVPW--------ALKXXXXXXXXXXXXXXXXQEEGKCKYAFMVEKEWFESNFKSAEAVQDWKSV---PVILDWRI 679
            H  + +C   CGN VTI +PFGI   CY+  D  + + C   + +L    ++V   +     + V       C ++  E +   L  +L   FS   +N F+ +GCN L+ +S+        GC S+C+ + +  +  CNG+ CC      VP+        +++                 +   C YAF+VE   F  NF S++ +++ ++V   PV LDW I
Sbjct:   25 HQPREDCKLKCGN-VTIEYPFGISTGCYYPGDDNFNLTCVVEEKLLLFGIIQVTN-ISHSGHVSVLFERFSECYEQKNETNGTALGYQLGSSFSLSSNNKFTLVGCNALSLLSTFGKQNYSTGCLSLCNSQPEA-NGRCNGVGCCTTEDFSVPFDSDTFQFGSVRLRNQVNNSLDLFNTSVYQFNPCTYAFLVEDGKF--NFDSSKDLKNLRNVTRFPVALDWSI 244          
The following BLAST results are available for this feature:
BLAST of CX295558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
WAKLD_ARATH1.631e-1127.04Wall-associated receptor kinase-like 4 OS=Arabidop... [more]
WAK3_ARATH1.631e-1126.67Wall-associated receptor kinase 3 OS=Arabidopsis t... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05073E03SK DroRLeaf1 Citrus clementina cDNA clone C05073E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295558 ID=CX295558; Name=CX295558; organism=Citrus clementina; type=EST; length=685bp
TATAATATTGCTGCTTCCCTGGCCAATAAAATCAATAGCGAAAGCACCAC
CGACACCACATTTAACGAAGCCAAATTGTCCATACAGTTGTGGAAACAAT
GTTACAATTCCATTTCCATTCGGAATTGGAGAAAATTGTTACTTTGATCA
ACGTTATGCAATAGACTGCAGATCCAATAAGCCAATCCTGAGAAGCATCA
ACCTGGAAGTGCTTGAATTCTTACTTGAAAAGAGCACAATGAGAGTAAAT
CAATCAGTGATCAGATCTTGTCAGGATAAAACTAAAGAACCAAGTTTTGT
AAACCTGGAGAAGCTCCCTTTTTACTTCTCATATTATGACAATATATTCT
CCGGCATCGGCTGCAACAACCTTGCCTCAATGTCATCAGCTGATCATGAC
TTCATTCTTGGTGGTTGCTTCTCTATTTGTGATCCAAGAAACAAGACAGA
TGATGATAGCTGCAATGGAATTGCGTGTTGCAAAGCAGGGGTCCCTTGGG
CTCTCAAAAGTTTTAATATTTCTATAAATAATGCAGCAAGTAGCAGGAGC
AGCAGCCAGGAGGAGGGGAAATGCAAATATGCATTTATGGTAGAAAAAGA
ATGGTTTGAAAGCAATTTTAAGAGTGCTGAAGCTGTTCAAGATTGGAAAT
CAGTACCTGTTATACTGGATTGGAGGATTCCCATT
back to top