CX295574
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: RA54B_MOUSE (DNA repair and recombination protein RAD54B OS=Mus musculus GN=Rad54b PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.672e-16 Identity = 40/88 (45.45%), Postives = 57/88 (64.77%), Query Frame = 3 Query: 12 NRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKI--LKNPQQRRFFKARNMKDLFTLNDDGN 269 + +I++D DWNP+TD+QA R WR GQK V +YRL+T GTIEEK+Y RQI K L+ + L + F +K+LFTL++ + Sbjct: 711 SHLILYDIDWNPATDIQAMSRVWRDGQKHPVHIYRLLTTGTIEEKIYQRQISKQGLSGAVVDLTRSSEHIQFSVEELKNLFTLHESSH 798
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: RAD54_HUMAN (DNA repair and recombination protein RAD54-like OS=Homo sapiens GN=RAD54L PE=1 SV=2) HSP 1 Score: 84.3445 bits (207), Expect = 5.954e-16 Identity = 38/84 (45.24%), Postives = 57/84 (67.86%), Query Frame = 3 Query: 12 NRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQ-RRFFKARNMKDLFTLND 260 NR+++FDPDWNP+ D QA R WR GQK+ +YRL++ GTIEEK++ RQ +K L++ ++ Q R F +K+LF L++ Sbjct: 586 NRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDEEQDVERHFSLGELKELFILDE 669
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: RA54B_HUMAN (DNA repair and recombination protein RAD54B OS=Homo sapiens GN=RAD54B PE=1 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 5.954e-16 Identity = 40/88 (45.45%), Postives = 56/88 (63.64%), Query Frame = 3 Query: 12 NRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKI--LKNPQQRRFFKARNMKDLFTLNDDGN 269 + +I++D DWNP+TD+QA R WR GQK V +YRL+T GTIEEK+Y RQI K L + L + F +K+LFTL++ + Sbjct: 733 SHLILYDIDWNPATDIQAMSRVWRDGQKYPVHIYRLLTTGTIEEKIYQRQISKQGLCGAVVDLTKTSEHIQFSVEELKNLFTLHESSD 820
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: RA54B_CHICK (DNA repair and recombination protein RAD54B OS=Gallus gallus GN=RAD54B PE=2 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 5.954e-16 Identity = 39/88 (44.32%), Postives = 58/88 (65.91%), Query Frame = 3 Query: 12 NRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKI--LKNPQQRRFFKARNMKDLFTLNDDGN 269 + +I++D DWNP+TD+QA R WR GQK V +YRL+T GTIEEK+Y RQI K L+ + L + F +++LFTL+++ + Sbjct: 740 SHLILYDIDWNPATDIQAMARVWRDGQKCTVHIYRLLTTGTIEEKIYQRQISKQDLSGAVVDLSKTSEHIHFSVEELRNLFTLHENSS 827
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: RAD54_YEAST (DNA repair and recombination protein RAD54 OS=Saccharomyces cerevisiae GN=RAD54 PE=1 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.262e-15 Identity = 38/85 (44.71%), Postives = 56/85 (65.88%), Query Frame = 3 Query: 12 NRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQ-RRFFKARNMKDLFTLNDD 263 NR+I+ DPDWNP+ D QA R WR GQK+D +YR I+ GTIEEK++ RQ K L++ ++ + R F + N++ LF N++ Sbjct: 745 NRLILMDPDWNPAADQQALARVWRDGQKKDCFIYRFISTGTIEEKIFQRQSMKMSLSSCVVDAKEDVERLFSSDNLRQLFQKNEN 829
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: ATRX_PONPY (Transcriptional regulator ATRX OS=Pongo pygmaeus GN=ATRX PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.123e-14 Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = 3 Query: 12 NRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARNMKDLFTLNDD 263 NRVIIFD WNPS D+Q+ R +R GQ + V VYR + +GT+E+K+Y RQ+ K L+ +++ Q R F + +L+T D Sbjct: 2130 NRVIIFDASWNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVDQQQVERHFTMNELTELYTFEPD 2213
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: ATRX_PANTR (Transcriptional regulator ATRX OS=Pan troglodytes GN=ATRX PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.123e-14 Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = 3 Query: 12 NRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARNMKDLFTLNDD 263 NRVIIFD WNPS D+Q+ R +R GQ + V VYR + +GT+E+K+Y RQ+ K L+ +++ Q R F + +L+T D Sbjct: 2130 NRVIIFDASWNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVDQQQVERHFTMNELTELYTFEPD 2213
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: ATRX_MOUSE (Transcriptional regulator ATRX OS=Mus musculus GN=Atrx PE=1 SV=2) HSP 1 Score: 80.1073 bits (196), Expect = 1.123e-14 Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = 3 Query: 12 NRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARNMKDLFTLNDD 263 NRVIIFD WNPS D+Q+ R +R GQ + V VYR + +GT+E+K+Y RQ+ K L+ +++ Q R F + +L+T D Sbjct: 2113 NRVIIFDASWNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVDQQQVERHFTMNELTELYTFEPD 2196
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: ATRX_HUMAN (Transcriptional regulator ATRX OS=Homo sapiens GN=ATRX PE=1 SV=4) HSP 1 Score: 80.1073 bits (196), Expect = 1.123e-14 Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = 3 Query: 12 NRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARNMKDLFTLNDD 263 NRVIIFD WNPS D+Q+ R +R GQ + V VYR + +GT+E+K+Y RQ+ K L+ +++ Q R F + +L+T D Sbjct: 2130 NRVIIFDASWNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVDQQQVERHFTMNELTELYTFEPD 2213
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: RDH54_YEAST (DNA repair and recombination protein RDH54 OS=Saccharomyces cerevisiae GN=RDH54 PE=1 SV=2) HSP 1 Score: 78.5666 bits (192), Expect = 3.267e-14 Identity = 40/110 (36.36%), Postives = 63/110 (57.27%), Query Frame = 3 Query: 12 NRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRR-------FFKARNMKDLFTLNDDGNGGSTETSNIFSQLSEDV 320 +R+I+FD DWNPS D+QA R R GQK+ +YRL+T G I+EK+ RQ+ K+ L+ K L + + R F ++KDLF+++ D + + L E++ Sbjct: 719 SRLILFDNDWNPSVDLQAMSRIHRDGQKKPCFIYRLVTTGCIDEKILQRQLMKNSLSQKFLGDSEMRNKESSNDDLFNKEDLKDLFSVHTDTKSNTHDLICSCDGLGEEI 828 The following BLAST results are available for this feature:
BLAST of CX295574 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 47
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Sequences
The
following sequences are available for this feature:
EST sequence >CX295574 ID=CX295574; Name=CX295574; organism=Citrus clementina; type=EST; length=662bpback to top |