CX295574

Overview
NameCX295574
Unique NameCX295574
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length662
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: RA54B_MOUSE (DNA repair and recombination protein RAD54B OS=Mus musculus GN=Rad54b PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.672e-16
Identity = 40/88 (45.45%), Postives = 57/88 (64.77%), Query Frame = 3
Query:   12 NRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKI--LKNPQQRRFFKARNMKDLFTLNDDGN 269
            + +I++D DWNP+TD+QA  R WR GQK  V +YRL+T GTIEEK+Y RQI K  L+  +  L    +   F    +K+LFTL++  +
Sbjct:  711 SHLILYDIDWNPATDIQAMSRVWRDGQKHPVHIYRLLTTGTIEEKIYQRQISKQGLSGAVVDLTRSSEHIQFSVEELKNLFTLHESSH 798          
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: RAD54_HUMAN (DNA repair and recombination protein RAD54-like OS=Homo sapiens GN=RAD54L PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 5.954e-16
Identity = 38/84 (45.24%), Postives = 57/84 (67.86%), Query Frame = 3
Query:   12 NRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQ-RRFFKARNMKDLFTLND 260
            NR+++FDPDWNP+ D QA  R WR GQK+   +YRL++ GTIEEK++ RQ +K  L++ ++   Q   R F    +K+LF L++
Sbjct:  586 NRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDEEQDVERHFSLGELKELFILDE 669          
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: RA54B_HUMAN (DNA repair and recombination protein RAD54B OS=Homo sapiens GN=RAD54B PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.954e-16
Identity = 40/88 (45.45%), Postives = 56/88 (63.64%), Query Frame = 3
Query:   12 NRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKI--LKNPQQRRFFKARNMKDLFTLNDDGN 269
            + +I++D DWNP+TD+QA  R WR GQK  V +YRL+T GTIEEK+Y RQI K  L   +  L    +   F    +K+LFTL++  +
Sbjct:  733 SHLILYDIDWNPATDIQAMSRVWRDGQKYPVHIYRLLTTGTIEEKIYQRQISKQGLCGAVVDLTKTSEHIQFSVEELKNLFTLHESSD 820          
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: RA54B_CHICK (DNA repair and recombination protein RAD54B OS=Gallus gallus GN=RAD54B PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.954e-16
Identity = 39/88 (44.32%), Postives = 58/88 (65.91%), Query Frame = 3
Query:   12 NRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKI--LKNPQQRRFFKARNMKDLFTLNDDGN 269
            + +I++D DWNP+TD+QA  R WR GQK  V +YRL+T GTIEEK+Y RQI K  L+  +  L    +   F    +++LFTL+++ +
Sbjct:  740 SHLILYDIDWNPATDIQAMARVWRDGQKCTVHIYRLLTTGTIEEKIYQRQISKQDLSGAVVDLSKTSEHIHFSVEELRNLFTLHENSS 827          
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: RAD54_YEAST (DNA repair and recombination protein RAD54 OS=Saccharomyces cerevisiae GN=RAD54 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.262e-15
Identity = 38/85 (44.71%), Postives = 56/85 (65.88%), Query Frame = 3
Query:   12 NRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQ-RRFFKARNMKDLFTLNDD 263
            NR+I+ DPDWNP+ D QA  R WR GQK+D  +YR I+ GTIEEK++ RQ  K  L++ ++   +   R F + N++ LF  N++
Sbjct:  745 NRLILMDPDWNPAADQQALARVWRDGQKKDCFIYRFISTGTIEEKIFQRQSMKMSLSSCVVDAKEDVERLFSSDNLRQLFQKNEN 829          
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: ATRX_PONPY (Transcriptional regulator ATRX OS=Pongo pygmaeus GN=ATRX PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.123e-14
Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = 3
Query:   12 NRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARNMKDLFTLNDD 263
            NRVIIFD  WNPS D+Q+  R +R GQ + V VYR + +GT+E+K+Y RQ+ K  L+ +++   Q  R F    + +L+T   D
Sbjct: 2130 NRVIIFDASWNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVDQQQVERHFTMNELTELYTFEPD 2213          
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: ATRX_PANTR (Transcriptional regulator ATRX OS=Pan troglodytes GN=ATRX PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.123e-14
Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = 3
Query:   12 NRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARNMKDLFTLNDD 263
            NRVIIFD  WNPS D+Q+  R +R GQ + V VYR + +GT+E+K+Y RQ+ K  L+ +++   Q  R F    + +L+T   D
Sbjct: 2130 NRVIIFDASWNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVDQQQVERHFTMNELTELYTFEPD 2213          
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: ATRX_MOUSE (Transcriptional regulator ATRX OS=Mus musculus GN=Atrx PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.123e-14
Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = 3
Query:   12 NRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARNMKDLFTLNDD 263
            NRVIIFD  WNPS D+Q+  R +R GQ + V VYR + +GT+E+K+Y RQ+ K  L+ +++   Q  R F    + +L+T   D
Sbjct: 2113 NRVIIFDASWNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVDQQQVERHFTMNELTELYTFEPD 2196          
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: ATRX_HUMAN (Transcriptional regulator ATRX OS=Homo sapiens GN=ATRX PE=1 SV=4)

HSP 1 Score: 80.1073 bits (196), Expect = 1.123e-14
Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = 3
Query:   12 NRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARNMKDLFTLNDD 263
            NRVIIFD  WNPS D+Q+  R +R GQ + V VYR + +GT+E+K+Y RQ+ K  L+ +++   Q  R F    + +L+T   D
Sbjct: 2130 NRVIIFDASWNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVDQQQVERHFTMNELTELYTFEPD 2213          
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: RDH54_YEAST (DNA repair and recombination protein RDH54 OS=Saccharomyces cerevisiae GN=RDH54 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.267e-14
Identity = 40/110 (36.36%), Postives = 63/110 (57.27%), Query Frame = 3
Query:   12 NRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRR-------FFKARNMKDLFTLNDDGNGGSTETSNIFSQLSEDV 320
            +R+I+FD DWNPS D+QA  R  R GQK+   +YRL+T G I+EK+  RQ+ K+ L+ K L + + R         F   ++KDLF+++ D    + +       L E++
Sbjct:  719 SRLILFDNDWNPSVDLQAMSRIHRDGQKKPCFIYRLVTTGCIDEKILQRQLMKNSLSQKFLGDSEMRNKESSNDDLFNKEDLKDLFSVHTDTKSNTHDLICSCDGLGEEI 828          
The following BLAST results are available for this feature:
BLAST of CX295574 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
RA54B_MOUSE2.672e-1645.45DNA repair and recombination protein RAD54B OS=Mus... [more]
RAD54_HUMAN5.954e-1645.24DNA repair and recombination protein RAD54-like OS... [more]
RA54B_HUMAN5.954e-1645.45DNA repair and recombination protein RAD54B OS=Hom... [more]
RA54B_CHICK5.954e-1644.32DNA repair and recombination protein RAD54B OS=Gal... [more]
RAD54_YEAST2.262e-1544.71DNA repair and recombination protein RAD54 OS=Sacc... [more]
ATRX_PONPY1.123e-1442.86Transcriptional regulator ATRX OS=Pongo pygmaeus G... [more]
ATRX_PANTR1.123e-1442.86Transcriptional regulator ATRX OS=Pan troglodytes ... [more]
ATRX_MOUSE1.123e-1442.86Transcriptional regulator ATRX OS=Mus musculus GN=... [more]
ATRX_HUMAN1.123e-1442.86Transcriptional regulator ATRX OS=Homo sapiens GN=... [more]
RDH54_YEAST3.267e-1436.36DNA repair and recombination protein RDH54 OS=Sacc... [more]

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Properties
Property NameValue
Genbank descriptionC05073F07SK DroRLeaf1 Citrus clementina cDNA clone C05073F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295574 ID=CX295574; Name=CX295574; organism=Citrus clementina; type=EST; length=662bp
CTGACTGGTGCAACAGGGTGATCATTTTTGACCCTGATTGGAACCCATCA
ACTGACGTGCAGGCTAGGGAGCGTGCTTGGCGTATCGGTCAAAAACAGGA
TGTAACTGTATATAGATTGATTACACGCGGAACTATTGAGGAGAAAGTGT
ACCACCGACAGATATACAAGCATTTTCTCACAAATAAGATATTGAAGAAC
CCACAGCAGAGAAGGTTTTTTAAAGCTCGTAATATGAAAGATCTTTTCAC
TCTCAATGATGATGGGAATGGTGGGTCTACTGAAACTTCTAATATTTTTA
GTCAGTTGTCTGAAGATGTGAATGTTGTTGGGGATCAGAAAGATAAGGAG
GACAAGCAGAAACATAAGAAAGCTGCTTCAGCAAACGCTGATGATGCTGT
AGGTGACAAAGAAAACAACTTAGAGATTGGGTCCTCCAGGAGAAAAGGGA
AAGAAAAAGTTGATAATATTGGTGACGAAGTAGATGAAGAAACAAATATT
TTAAAGAGCCTCTTTGACGCCAATGGAATACATGTAAGTTTTCCTCTGTT
TGCTTACATGATTGCCTTTGGTTGCGTAGGCTGTACACTCTTTTTCTGTG
GAGGAGTTAATCTTCTTGCCTCTAACTCATTGATCAAAAGACTTACCCTG
CTACTACTATAA
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