CX295574

Overview
NameCX295574
Unique NameCX295574
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length662
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: RAD26_MOUSE (Putative DNA repair and recombination protein RAD26-like OS=Mus musculus GN=Rad26l PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.267e-14
Identity = 37/72 (51.39%), Postives = 53/72 (73.61%), Query Frame = 3
Query:   12 NRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKA 227
            N VI+FDP WNP+ D+QA +RA+RIGQ +DV V RLI+ GT+EE +Y RQ+YK  L   ++ +   +R+F+A
Sbjct:  594 NVVILFDPTWNPANDLQAVDRAYRIGQCRDVKVLRLISLGTVEEIMYLRQVYKQQLHCVVVGSENAKRYFEA 665          
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: RAD26_HUMAN (Putative DNA repair and recombination protein RAD26-like OS=Homo sapiens GN=RAD26L PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.267e-14
Identity = 37/72 (51.39%), Postives = 53/72 (73.61%), Query Frame = 3
Query:   12 NRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKA 227
            N V++FDP WNP+ D+QA +RA+RIGQ +DV V RLI+ GT+EE +Y RQIYK  L   ++ +   +R+F+A
Sbjct:  607 NVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVLRLISLGTVEEIMYLRQIYKQQLHCVVVGSENAKRYFEA 678          
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: BTAF1_HUMAN (TATA-binding protein-associated factor 172 OS=Homo sapiens GN=BTAF1 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 7.278e-14
Identity = 40/92 (43.48%), Postives = 55/92 (59.78%), Query Frame = 3
Query:   18 VIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQR-RFFKARNMKDLFTLNDDGNGGSTETS 290
            V+  + DWNP  D+QA +RA RIGQK+ V VYRLITRGT+EEK+   Q +K  + N ++       +      + DLFTL+ DG     +TS
Sbjct: 1721 VVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQENSSLQSMGTDQLLDLFTLDKDGKAEKADTS 1812          
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: ATRX_CAEEL (Transcriptional regulator ATRX homolog OS=Caenorhabditis elegans GN=xnp-1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.341e-12
Identity = 32/79 (40.51%), Postives = 51/79 (64.56%), Query Frame = 3
Query:   12 NRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARNMKDLF 248
            NRVIIFD  WNPS D Q+  R +R GQ + V +YR I +GT+EE++Y RQ+ K   + +++   Q +R +   ++ +L+
Sbjct: 1063 NRVIIFDACWNPSHDTQSLFRVYRFGQTKPVYIYRFIAQGTMEERIYKRQVTKESTSMRVVDEAQIQRHYLGNDLTELY 1141          
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: ATRX_DROME (Transcriptional regulator ATRX homolog OS=Drosophila melanogaster GN=XNP PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.993e-12
Identity = 32/80 (40.00%), Postives = 49/80 (61.25%), Query Frame = 3
Query:   12 NRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARNMKDLFT 251
            NRV+IFD  WNPS D Q+  R +R GQ +   +YRLI  GT+E+KVY RQ+ K     +++   Q  R +   ++ +L++
Sbjct: 1010 NRVVIFDVSWNPSHDTQSIFRVYRFGQIKPCYIYRLIAMGTMEQKVYERQVAKQATAKRVIDEQQISRHYNQTDLMELYS 1089          
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: CHD2_HUMAN (Chromodomain-helicase-DNA-binding protein 2 OS=Homo sapiens GN=CHD2 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.162e-11
Identity = 30/60 (50.00%), Postives = 44/60 (73.33%), Query Frame = 3
Query:   18 VIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILK 197
            V+IFD DWNP  D+QA+ RA RIGQK+ V +YRL+T+GT+EE++  R   K  L + +++
Sbjct:  882 VVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQ 941          
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: DOM_DROME (Helicase domino OS=Drosophila melanogaster GN=dom PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.381e-11
Identity = 33/90 (36.67%), Postives = 53/90 (58.89%), Query Frame = 3
Query:   18 VIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQ-QRRFFKARNMKDLFTLNDDGNGGSTE 284
            VI +D DWNP+ D QA++R  RIGQ +DV +YRL++  TIE  +  +   K  L++  ++       +FK+  +KDLFT+       S++
Sbjct: 1748 VIFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLVSERTIEVNILKKANQKRMLSDMAIEGGNFTTTYFKSSTIKDLFTMEQSEQDESSQ 1837          
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: ISW2_YEAST (ISWI chromatin-remodeling complex ATPase ISW2 OS=Saccharomyces cerevisiae GN=ISW2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.415e-11
Identity = 34/75 (45.33%), Postives = 44/75 (58.67%), Query Frame = 3
Query:   18 VIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARNMKD 242
            VI+FD DWNP  D+QA +RA RIGQK+ V VYR +T   IEEKV  R   K  L   +++    ++     N KD
Sbjct:  581 VILFDSDWNPQADLQAMDRAHRIGQKKQVHVYRFVTENAIEEKVIERAAQKLRLDQLVIQQGTGKKTASLGNSKD 655          
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: INO80_SCHPO (Putative DNA helicase ino80 OS=Schizosaccharomyces pombe GN=ino80 PE=1 SV=4)

HSP 1 Score: 68.1662 bits (165), Expect = 4.415e-11
Identity = 33/65 (50.77%), Postives = 43/65 (66.15%), Query Frame = 3
Query:   18 VIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQR 212
            VI +D DWNPS D QA +RA RIGQ++ VTVYR ITRGTIEE++  R   K  +   ++   + R
Sbjct: 1519 VIFYDSDWNPSIDSQAMDRAHRIGQQKQVTVYRFITRGTIEERIVIRAKEKEEVQKVVISGGETR 1583          
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: INO80_NEOFI (Putative DNA helicase ino80 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=ino80 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.415e-11
Identity = 31/51 (60.78%), Postives = 39/51 (76.47%), Query Frame = 3
Query:   18 VIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYK 170
            VI +D DWNP+ D QA +RA R+GQ + VTVYRLITRGTIEE++  R + K
Sbjct: 1508 VIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLITRGTIEERIRKRALQK 1558          
The following BLAST results are available for this feature:
BLAST of CX295574 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
RAD26_MOUSE4.267e-1451.39Putative DNA repair and recombination protein RAD2... [more]
RAD26_HUMAN4.267e-1451.39Putative DNA repair and recombination protein RAD2... [more]
BTAF1_HUMAN7.278e-1443.48TATA-binding protein-associated factor 172 OS=Homo... [more]
ATRX_CAEEL2.341e-1240.51Transcriptional regulator ATRX homolog OS=Caenorha... [more]
ATRX_DROME3.993e-1240.00Transcriptional regulator ATRX homolog OS=Drosophi... [more]
CHD2_HUMAN1.162e-1150.00Chromodomain-helicase-DNA-binding protein 2 OS=Hom... [more]
DOM_DROME3.381e-1136.67Helicase domino OS=Drosophila melanogaster GN=dom ... [more]
ISW2_YEAST4.415e-1145.33ISWI chromatin-remodeling complex ATPase ISW2 OS=S... [more]
INO80_SCHPO4.415e-1150.77Putative DNA helicase ino80 OS=Schizosaccharomyces... [more]
INO80_NEOFI4.415e-1160.78Putative DNA helicase ino80 OS=Neosartorya fischer... [more]

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Properties
Property NameValue
Genbank descriptionC05073F07SK DroRLeaf1 Citrus clementina cDNA clone C05073F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295574 ID=CX295574; Name=CX295574; organism=Citrus clementina; type=EST; length=662bp
CTGACTGGTGCAACAGGGTGATCATTTTTGACCCTGATTGGAACCCATCA
ACTGACGTGCAGGCTAGGGAGCGTGCTTGGCGTATCGGTCAAAAACAGGA
TGTAACTGTATATAGATTGATTACACGCGGAACTATTGAGGAGAAAGTGT
ACCACCGACAGATATACAAGCATTTTCTCACAAATAAGATATTGAAGAAC
CCACAGCAGAGAAGGTTTTTTAAAGCTCGTAATATGAAAGATCTTTTCAC
TCTCAATGATGATGGGAATGGTGGGTCTACTGAAACTTCTAATATTTTTA
GTCAGTTGTCTGAAGATGTGAATGTTGTTGGGGATCAGAAAGATAAGGAG
GACAAGCAGAAACATAAGAAAGCTGCTTCAGCAAACGCTGATGATGCTGT
AGGTGACAAAGAAAACAACTTAGAGATTGGGTCCTCCAGGAGAAAAGGGA
AAGAAAAAGTTGATAATATTGGTGACGAAGTAGATGAAGAAACAAATATT
TTAAAGAGCCTCTTTGACGCCAATGGAATACATGTAAGTTTTCCTCTGTT
TGCTTACATGATTGCCTTTGGTTGCGTAGGCTGTACACTCTTTTTCTGTG
GAGGAGTTAATCTTCTTGCCTCTAACTCATTGATCAAAAGACTTACCCTG
CTACTACTATAA
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