CX295574

Overview
NameCX295574
Unique NameCX295574
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length662
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: INO80_GIBZE (Putative DNA helicase INO80 OS=Gibberella zeae GN=INO80 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.415e-11
Identity = 31/60 (51.67%), Postives = 43/60 (71.67%), Query Frame = 3
Query:   18 VIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILK 197
            VI +D DWNP+ D QA +RA R+GQ + VTVYRLITRGTIEE++  R + K  +   +++
Sbjct: 1716 VIFYDSDWNPTIDSQAMDRAHRLGQTKQVTVYRLITRGTIEERIRKRAMQKEEVQRVVIQ 1775          
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: INO80_COCIM (Putative DNA helicase INO80 OS=Coccidioides immitis GN=INO80 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.415e-11
Identity = 31/51 (60.78%), Postives = 39/51 (76.47%), Query Frame = 3
Query:   18 VIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYK 170
            VI +D DWNP+ D QA +RA R+GQ + VTVYRLITRGTIEE++  R + K
Sbjct: 1470 VIFYDSDWNPTIDSQAMDRAHRLGQTKQVTVYRLITRGTIEERIRKRALQK 1520          
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: INO80_ASPTN (Putative DNA helicase ino80 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=ino80 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.415e-11
Identity = 31/51 (60.78%), Postives = 39/51 (76.47%), Query Frame = 3
Query:   18 VIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYK 170
            VI +D DWNP+ D QA +RA R+GQ + VTVYRLITRGTIEE++  R + K
Sbjct: 1489 VIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLITRGTIEERIRKRALQK 1539          
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: INO80_ASPOR (Putative DNA helicase ino80 OS=Aspergillus oryzae GN=ino80 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.415e-11
Identity = 31/51 (60.78%), Postives = 39/51 (76.47%), Query Frame = 3
Query:   18 VIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYK 170
            VI +D DWNP+ D QA +RA R+GQ + VTVYRLITRGTIEE++  R + K
Sbjct: 1306 VIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLITRGTIEERIRKRALQK 1356          
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: INO80_ASPNC (Putative DNA helicase ino80 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=ino80 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.415e-11
Identity = 31/51 (60.78%), Postives = 39/51 (76.47%), Query Frame = 3
Query:   18 VIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYK 170
            VI +D DWNP+ D QA +RA R+GQ + VTVYRLITRGTIEE++  R + K
Sbjct: 1496 VIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLITRGTIEERIRKRALQK 1546          
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: INO80_ASPFU (Putative DNA helicase ino80 OS=Aspergillus fumigatus GN=ino80 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.415e-11
Identity = 31/51 (60.78%), Postives = 39/51 (76.47%), Query Frame = 3
Query:   18 VIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYK 170
            VI +D DWNP+ D QA +RA R+GQ + VTVYRLITRGTIEE++  R + K
Sbjct: 1508 VIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLITRGTIEERIRKRALQK 1558          
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: INO80_ASPCL (Putative DNA helicase ino80 OS=Aspergillus clavatus GN=ino80 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.415e-11
Identity = 31/51 (60.78%), Postives = 39/51 (76.47%), Query Frame = 3
Query:   18 VIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYK 170
            VI +D DWNP+ D QA +RA R+GQ + VTVYRLITRGTIEE++  R + K
Sbjct: 1509 VIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLITRGTIEERIRKRALQK 1559          
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: INO80_NEUCR (Putative DNA helicase ino-80 OS=Neurospora crassa GN=ino-80 PE=3 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 5.767e-11
Identity = 31/51 (60.78%), Postives = 39/51 (76.47%), Query Frame = 3
Query:   18 VIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYK 170
            VI +D DWNP+ D QA +RA R+GQ + VTVYRLITRGTIEE++  R + K
Sbjct: 1788 VIFYDSDWNPTIDSQAMDRAHRLGQTKQVTVYRLITRGTIEERIRKRAMQK 1838          
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: INO80_MAGGR (Putative DNA helicase INO80 OS=Magnaporthe grisea GN=INO80 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.767e-11
Identity = 31/51 (60.78%), Postives = 39/51 (76.47%), Query Frame = 3
Query:   18 VIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYK 170
            VI +D DWNP+ D QA +RA R+GQ + VTVYRLITRGTIEE++  R + K
Sbjct: 1749 VIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLITRGTIEERIRKRAMQK 1799          
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: CHD1_MOUSE (Chromodomain-helicase-DNA-binding protein 1 OS=Mus musculus GN=Chd1 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.767e-11
Identity = 29/60 (48.33%), Postives = 43/60 (71.67%), Query Frame = 3
Query:   18 VIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILK 197
            V+IFD DWNP  D+QA+ RA RIGQK+ V +YRL+T+G++EE +  R   K  L + +++
Sbjct:  877 VVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQ 936          
The following BLAST results are available for this feature:
BLAST of CX295574 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
INO80_GIBZE4.415e-1151.67Putative DNA helicase INO80 OS=Gibberella zeae GN=... [more]
INO80_COCIM4.415e-1160.78Putative DNA helicase INO80 OS=Coccidioides immiti... [more]
INO80_ASPTN4.415e-1160.78Putative DNA helicase ino80 OS=Aspergillus terreus... [more]
INO80_ASPOR4.415e-1160.78Putative DNA helicase ino80 OS=Aspergillus oryzae ... [more]
INO80_ASPNC4.415e-1160.78Putative DNA helicase ino80 OS=Aspergillus niger (... [more]
INO80_ASPFU4.415e-1160.78Putative DNA helicase ino80 OS=Aspergillus fumigat... [more]
INO80_ASPCL4.415e-1160.78Putative DNA helicase ino80 OS=Aspergillus clavatu... [more]
INO80_NEUCR5.767e-1160.78Putative DNA helicase ino-80 OS=Neurospora crassa ... [more]
INO80_MAGGR5.767e-1160.78Putative DNA helicase INO80 OS=Magnaporthe grisea ... [more]
CHD1_MOUSE5.767e-1148.33Chromodomain-helicase-DNA-binding protein 1 OS=Mus... [more]

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Properties
Property NameValue
Genbank descriptionC05073F07SK DroRLeaf1 Citrus clementina cDNA clone C05073F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295574 ID=CX295574; Name=CX295574; organism=Citrus clementina; type=EST; length=662bp
CTGACTGGTGCAACAGGGTGATCATTTTTGACCCTGATTGGAACCCATCA
ACTGACGTGCAGGCTAGGGAGCGTGCTTGGCGTATCGGTCAAAAACAGGA
TGTAACTGTATATAGATTGATTACACGCGGAACTATTGAGGAGAAAGTGT
ACCACCGACAGATATACAAGCATTTTCTCACAAATAAGATATTGAAGAAC
CCACAGCAGAGAAGGTTTTTTAAAGCTCGTAATATGAAAGATCTTTTCAC
TCTCAATGATGATGGGAATGGTGGGTCTACTGAAACTTCTAATATTTTTA
GTCAGTTGTCTGAAGATGTGAATGTTGTTGGGGATCAGAAAGATAAGGAG
GACAAGCAGAAACATAAGAAAGCTGCTTCAGCAAACGCTGATGATGCTGT
AGGTGACAAAGAAAACAACTTAGAGATTGGGTCCTCCAGGAGAAAAGGGA
AAGAAAAAGTTGATAATATTGGTGACGAAGTAGATGAAGAAACAAATATT
TTAAAGAGCCTCTTTGACGCCAATGGAATACATGTAAGTTTTCCTCTGTT
TGCTTACATGATTGCCTTTGGTTGCGTAGGCTGTACACTCTTTTTCTGTG
GAGGAGTTAATCTTCTTGCCTCTAACTCATTGATCAAAAGACTTACCCTG
CTACTACTATAA
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