CX295579

Overview
NameCX295579
Unique NameCX295579
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14984 contig Ccv1_Contig14984:265..988. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX295579 vs. ExPASy Swiss-Prot
Match: OMT11_DICDI (Probable inactive O-methyltransferase 11 OS=Dictyostelium discoideum GN=omt11 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.178e-11
Identity = 41/144 (28.47%), Postives = 75/144 (52.08%), Query Frame = 2 
Query:  272 SYYGKKPEMNGLMRKAMSGVSVPFMTSVLDGYDG---FKGVKRLVDVGGSAGDCLRMILQKHPFICEGINFDLPEVVA---EAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVL 685
            S Y ++ E N + +   +   + + T +L    G       + +VD+GGS G  +  +L ++P +  GINFD   V+    E    P + H+ GD FKS+P AD   MK +L  ++D++C  +++   K++ +  K+I  + +L
Sbjct:  132 SDYWEQIEKNEIYKNEFNDGMIGYTTHILKFLKGKIDLSKFETVVDIGGSHGYLIGSLLDRYPNV-NGINFDTDMVINSSNEKYQHPRLKHVAGDFFKSVPEADCYLMKLILRCFSDEKCCELLKIISKSMKSNAKIIILDIIL 274
The following BLAST results are available for this feature:
BLAST of CX295579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
OMT11_DICDI5.178e-1128.47Probable inactive O-methyltransferase 11 OS=Dictyo... [more]

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Properties
Property NameValue
Genbank descriptionC05073F12SK DroRLeaf1 Citrus clementina cDNA clone C05073F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295579 ID=CX295579; Name=CX295579; organism=Citrus clementina; type=EST; length=723bp
TTCGGCCGAGGGCCGAGAACTTGCACGTATCCTCCGCTTGCTCACCAGCT
ACGGCGTGTTCTCGGAGCATCGCGAGTTTGGAGGCGAAAGGAAGTACAGC
CTCACCGAGATCGGGAAATCCCTCGTTACTGATGCCGAGGGTCTATCGTA
CGCGCCCTACGTGCTCCAGCATCACCAGGACGCGCTTATGAGCGCGTGGC
CTTTGGTGCACGAGGCCGTTCTGGACCCAACTATTGAGCCATTTGTGAAA
GTCCATGGCGAGCCGGCATATAGTTATTATGGGAAGAAGCCTGAAATGAA
CGGCTTGATGCGAAAAGCCATGTCGGGAGTGTCCGTGCCGTTCATGACGT
CCGTTTTGGACGGTTACGATGGGTTCAAAGGTGTGAAGCGATTGGTTGAT
GTGGGTGGGAGTGCAGGTGATTGCCTGAGGATGATATTACAGAAACATCC
TTTTATATGTGAAGGGATCAATTTTGATTTGCCTGAGGTTGTTGCCGAAG
CTCCAAGTATCCCTGGAGTGACCCATATTGGTGGGGACATGTTTAAGTCC
ATTCCTGCCGCTGATGCTATCTTTATGAAGTGGGTTTTAACTACATGGAC
TGACGATGAATGCAAGCTGATAATGGAGAACTGTTACAAGGCTCTTCCGG
CAGGAGGAAAACTGATTGCTTGTGAGCCCGTGCTGCCTGATGATTCAACG
AGAGTCAGAGGACGCGTGCTCTC
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