CX295581

Overview
NameCX295581
Unique NameCX295581
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295581_ssr15 microsatellite CX295581_ssr15:15..32. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX295581 vs. ExPASy Swiss-Prot
Match: KCS1_ARATH (3-ketoacyl-CoA synthase 1 OS=Arabidopsis thaliana GN=KCS1 PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.339e-43
Identity = 90/206 (43.69%), Postives = 129/206 (62.62%), Query Frame = 3
Query:  114 IQHNRRLPDFLQSVNLKYVKLGYHY---LISNLLTLCFIPLIIITSIQVSEMNIDDLRQLWIH--LQFNLVSVVICSAILVFGLTVFIMTRPRPVYLVDYSCYKPPHNLKASYDKFMEHSKLTGDFDESSLEFQRNILERSGLGEETYFPEAMHAIPPKPSMAAAREEAEQVMYGALDNLFSNTNVNPKDIGILVVNCSLFILHPS 716
            I+  RRLPD L SV LKYVKLG H    + + L  L  +PL     +Q++ +  D   +LW +  +Q +  + + C   L F LT+++  R +PVYLVD+SCYKP    K S D F+  ++  G F + +++FQ+ I  R+GLG+ETY P  + + PPK +M+ AR EAE VM+GALD+LF  T + P ++GIL+VNCSLF   PS
Sbjct:   28 IRIRRRLPDLLTSVKLKYVKLGLHNSCNVTTILFFLIILPLTGTVLVQLTGLTFDTFSELWSNQAVQLDTATRLTCLVFLSFVLTLYVANRSKPVYLVDFSCYKPEDERKISVDSFLTMTEENGSFTDDTVQFQQRISNRAGLGDETYLPRGITSTPPKLNMSEARAEAEAVMFGALDSLFEKTGIKPAEVGILIVNCSLFNPTPS 233          
BLAST of CX295581 vs. ExPASy Swiss-Prot
Match: KCS16_ARATH (3-ketoacyl-CoA synthase 16 OS=Arabidopsis thaliana GN=KCS16 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.806e-43
Identity = 85/192 (44.27%), Postives = 131/192 (68.23%), Query Frame = 3
Query:  159 LKYVKLGYHYLISNLLTLCFIPLIIITSIQVSEMNIDDLRQLWIHLQFNLVSVVICSAILVFGLTVFIMTRPRPVYLVDYSCYKPPHNLKASYDKFMEHSKL---TGDFDESS---LEFQRNILERSGLGEETYFPEAMHAIPPKPSMAAAREEAEQVMYGALDNLFSNTNVNPKDIGILVVNCSLFILHPS 716
            +K VK+ ++YL+++   LCF+PL++  +++ S ++  DL+  +++LQ N  S+ +    L  G T+++MTRP+PVYLVD+SCY PP +LKAS  + M+H +L    G + + S   ++F   ILERSGLG+ETY PE +  +P + ++A +R E E+V+ GA+DNLF NT ++P DIGILVVN S F   PS
Sbjct:    5 MKKVKIFFNYLMAHRFKLCFLPLMVAIAVEASRLSTQDLQNFYLYLQNNHTSLTMFFLYLALGSTLYLMTRPKPVYLVDFSCYLPPSHLKASTQRIMQHVRLVREAGAWKQESDYLMDFCEKILERSGLGQETYVPEGLQTLPLQQNLAVSRIETEEVIIGAVDNLFRNTGISPSDIGILVVNSSTFNPTPS 196          
BLAST of CX295581 vs. ExPASy Swiss-Prot
Match: KCS8_ARATH (3-ketoacyl-CoA synthase 8 OS=Arabidopsis thaliana GN=KCS8 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.223e-35
Identity = 77/178 (43.26%), Postives = 115/178 (64.61%), Query Frame = 3
Query:  210 LCFIPLIIITSIQVSEMNIDDLRQLWIH-LQFNLVSVVICSAILVFGLTVFIMTRPRPVYLVDYSCYKPPHNLKASYDKFMEHSKLTGDF--------DESSLEFQRNILERSGLGEETYFPEAMHAIPPKPSMAAAREEAEQVMYGALDNLFSNTNVNPKDIGILVVNCSLFILHPS 716
            + FI L+   +++ S++N++DL++  +H  Q NL ++ +   ++VF   ++++TRP+PVYLVD+SCY PP +LK S    M H++   +          +  ++FQ  ILERSGLG+ETY PE +   P +  M A+R+E E+V++GALDNLF NT V P DIGILVVN S F   PS
Sbjct:   11 ILFISLMAGLAMKGSKINVEDLQKFSLHHTQNNLQTISLLLFLVVFVWILYMLTRPKPVYLVDFSCYLPPSHLKVSIQTLMGHARRAREAGMCWKNKESDHLVDFQEKILERSGLGQETYIPEGLQCFPLQQGMGASRKETEEVIFGALDNLFRNTGVKPDDIGILVVNSSTFNPTPS 188          
BLAST of CX295581 vs. ExPASy Swiss-Prot
Match: KCS15_ARATH (3-ketoacyl-CoA synthase 15 OS=Arabidopsis thaliana GN=KCS15 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.472e-29
Identity = 73/205 (35.61%), Postives = 117/205 (57.07%), Query Frame = 3
Query:  105 GVRIQHNRRLPDFLQSVNLKYVKLGYHYLISNLLTLCF-IPLIIITSIQVSEMNIDDLRQLWIHLQFNLVSVVICSAILVFGLTVFIMTRPRPVYLVDYSCYKPPHNLKASYDKFMEHSKLTGDFDESSLEFQRNILERSGLGEETYFPEAMHAIPPKPSMAAAREEAEQVMYGALDNLFSNTNVNPKDIGILVVNCSLFILHPS 716
            GV+ +  +  PDFL   NL+YVKLGY YL+S   T CF +P +++  I VS                  + ++       F L ++    P  V+L+D+SCY+PP +LK +   F+E +  +G+F+E+++E QR +L++SG+GEE+Y P  +     + ++   REEA  V++GA+D L + T +N K I ILV+NC +    PS
Sbjct:   12 GVKSKSPKGSPDFL-GYNLRYVKLGYIYLLSLSRTFCFFLPPLLLLFIFVSRF----------------LPILAFPLSTFFILLIYHYLTPSSVFLLDFSCYRPPDHLKITKSDFIELAMKSGNFNETAIELQRKVLDQSGIGEESYMPRVVFKPGHRVNLRDGREEAAMVIFGAIDELLAATKINVKHIKILVLNCGVLNTTPS 199          
BLAST of CX295581 vs. ExPASy Swiss-Prot
Match: KCS7_ARATH (3-ketoacyl-CoA synthase 7 OS=Arabidopsis thaliana GN=KCS7 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.378e-27
Identity = 60/132 (45.45%), Postives = 86/132 (65.15%), Query Frame = 3
Query:  324 CSAILVFGLTVFIMTRPRPV-YLVDYSCYKPPHNLKASYDKFMEHSKLTGDFDESSLEFQRNILERSGLGEETYFPEAMHAIPPKPSMAAAREEAEQVMYGALDNLFSNTNVNPKDIGILVVNCSLFILHPS 716
            C  I VFG   F   +PR + YL+D+SCY+PP  L+A    F+EH  ++G FD+ SL+ Q+ ILERSG+ ++   P  +H IPP  S++AAREE  ++++  + +LFS   ++PK I ILV NCSLF   PS
Sbjct:   30 CVLIAVFGYYFF---KPRCIIYLIDFSCYQPPDFLRAPVSNFIEHLTISGVFDQESLDLQQKILERSGISDDASVPATVHEIPPNASISAAREETHEILFAIVQDLFSKHEIDPKSIDILVSNCSLFCPSPS 158          
BLAST of CX295581 vs. ExPASy Swiss-Prot
Match: KCS14_ARATH (Probable 3-ketoacyl-CoA synthase 14 OS=Arabidopsis thaliana GN=KCS14 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.930e-27
Identity = 64/164 (39.02%), Postives = 98/164 (59.76%), Query Frame = 3
Query:  225 LIIITSIQVSEMNIDDLRQLWIHLQFNLVSVVICSAILVFGLTVFIMTRPRPVYLVDYSCYKPPHNLKASYDKFMEHSKLTGDFDESSLEFQRNILERSGLGEETYFPEAMHAIPPKPSMAAAREEAEQVMYGALDNLFSNTNVNPKDIGILVVNCSLFILHPS 716
            L+++  I +S   +D L   + H  F+   V I   ++      +  TR +PVYLVD+SC++P  + K S + F   +K    + E +++F   IL RSGLG++TY P  M   PP PSM  AR E+E V++GAL++LF  T + P+++GI +VNCSLF  +PS
Sbjct:   10 LLLLILILLSLFELDLLH--FHHDFFSPFPVKIGLLLISIFFYAYSTTRSKPVYLVDFSCHQPTDSCKISSETFFNMAKGAQLYTEETIQFMTRILNRSGLGDDTYSPRCMLTSPPTPSMYEARHESELVIFGALNSLFKKTGIEPREVGIFIVNCSLFNPNPS 171          
BLAST of CX295581 vs. ExPASy Swiss-Prot
Match: KCS13_ARATH (3-ketoacyl-CoA synthase 13 OS=Arabidopsis thaliana GN=HIC PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.989e-26
Identity = 62/164 (37.80%), Postives = 98/164 (59.76%), Query Frame = 3
Query:  225 LIIITSIQVSEMNIDDLRQLWIHLQFNLVSVVICSAILVFGLTVFIMTRPRPVYLVDYSCYKPPHNLKASYDKFMEHSKLTGDFDESSLEFQRNILERSGLGEETYFPEAMHAIPPKPSMAAAREEAEQVMYGALDNLFSNTNVNPKDIGILVVNCSLFILHPS 716
            ++++  I +S   +D L   + H  F+   V I   ++      +  TR +PVYLVD+SC++P  + K S + F   +K    + + +++F   IL RSGLG++TY P  M   PP PSM  AR E+E V++GAL++LF  T + P+++GI +VNCSLF  +PS
Sbjct:   10 ILLLILILISLFELDLLH--FHHDFFSPFPVKIGLLLISIFFYAYSTTRSKPVYLVDFSCHQPTDSCKISSETFFNMAKGAQLYTDETIQFMTRILNRSGLGDDTYSPRCMLTSPPTPSMYEARHESELVIFGALNSLFKKTGIEPREVGIFIVNCSLFNPNPS 171          
BLAST of CX295581 vs. ExPASy Swiss-Prot
Match: KCS20_ARATH (Probable 3-ketoacyl-CoA synthase 20 OS=Arabidopsis thaliana GN=KCS20 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.747e-14
Identity = 47/153 (30.72%), Postives = 82/153 (53.59%), Query Frame = 3
Query:  288 IHLQFNLVSVVICSAILVF----GLTVF------IMTRPRPVYLVDYSCYKPPHNLKASYDKFMEHSKLTGDFDESSLEFQRNILERSGLGEETYFPEAMHAIPPKPSMAAAREEAEQVMYGALDNLFSNTNVNPKDIGILVVNCSLFILHPS 716
            I +  + ++ ++ S + VF    GL V       I TR + VYL+D++CY+ P + +      +E   L    D+ S++FQ  ILERS L  +T  P ++  IP K S+++ + E    ++ ++++L     ++P+ I IL+ NCSL    PS
Sbjct:   11 ISMSISELTTLLSSGVSVFEIFAGLLVVHLIYQRIRTRVK-VYLLDFTCYRAPDSNRVPMSTLIETIYLDDKLDQESIDFQARILERSWLSNQTSIPRSLMEIPLKKSLSSVKIETMTTIFTSVEDLLRKNKLSPRSIDILITNCSLHSPSPS 162          
BLAST of CX295581 vs. ExPASy Swiss-Prot
Match: KCS21_ARATH (3-ketoacyl-CoA synthase 21 OS=Arabidopsis thaliana GN=KCS21 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.586e-13
Identity = 46/144 (31.94%), Postives = 71/144 (49.31%), Query Frame = 3
Query:  300 FNLVSVVICSAILVFGLTVFIMTR--PRPVYLVDYSCYKPPHNLKASYDKFMEHSKLTGDFDESSLEFQRNILERSGLGEETYFPE-AMHAIPPKPSMAAAREEAEQVMYGALDNLFSNT--NVNPKDIGILVVNCSLFILHPS 716
            F+L S+++ S + VF +  F+  R   R  Y++ Y CYK     K   +   +  +   +       F    +  SG+GEETY P   +      P++  A  E +++M+  LD LF  T  +++P DI ILVVN SLF   PS
Sbjct:    4 FSLSSLLLLSTLFVFYIFKFVFKRRNQRNCYMLHYECYKGMEERKLDTETCAKVVQRNKNLGLEEYRFLLRTMASSGIGEETYGPRNVLEGREDSPTLLDAHSEMDEIMFDTLDKLFHKTKGSISPSDIDILVVNVSLFAPSPS 147          
The following BLAST results are available for this feature:
BLAST of CX295581 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
KCS1_ARATH2.339e-4343.693-ketoacyl-CoA synthase 1 OS=Arabidopsis thaliana ... [more]
KCS16_ARATH6.806e-4344.273-ketoacyl-CoA synthase 16 OS=Arabidopsis thaliana... [more]
KCS8_ARATH5.223e-3543.263-ketoacyl-CoA synthase 8 OS=Arabidopsis thaliana ... [more]
KCS15_ARATH1.472e-2935.613-ketoacyl-CoA synthase 15 OS=Arabidopsis thaliana... [more]
KCS7_ARATH1.378e-2745.453-ketoacyl-CoA synthase 7 OS=Arabidopsis thaliana ... [more]
KCS14_ARATH8.930e-2739.02Probable 3-ketoacyl-CoA synthase 14 OS=Arabidopsis... [more]
KCS13_ARATH1.989e-2637.803-ketoacyl-CoA synthase 13 OS=Arabidopsis thaliana... [more]
KCS20_ARATH1.747e-1430.72Probable 3-ketoacyl-CoA synthase 20 OS=Arabidopsis... [more]
KCS21_ARATH9.586e-1331.943-ketoacyl-CoA synthase 21 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionC05073G02SK DroRLeaf1 Citrus clementina cDNA clone C05073G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295581 ID=CX295581; Name=CX295581; organism=Citrus clementina; type=EST; length=729bp
TGACCTTCCCCCCATCTCTCTCTCTCTCTCTCCGTCAATCACTACCGGCA
ATGGAACAAAGCGGCCCAACATACGACAGTGGTAGCGGCGGCGGTGCTCC
GGTTGGTGTTCGGATCCAACACAATAGAAGGTTACCCGATTTCTTACAAA
GCGTGAATCTTAAGTACGTAAAACTTGGGTACCATTACCTCATTTCAAAT
CTATTAACACTATGTTTCATTCCCTTAATTATAATCACCTCTATTCAAGT
TTCGGAAATGAACATTGATGATCTACGTCAGTTGTGGATTCACCTTCAGT
TCAATCTCGTAAGCGTTGTTATTTGCTCAGCCATTCTTGTTTTTGGCTTA
ACGGTTTTTATCATGACTCGGCCAAGACCGGTTTATTTAGTTGATTACTC
CTGTTATAAACCACCCCATAATCTCAAAGCCTCGTATGATAAATTCATGG
AGCATTCGAAGTTAACAGGGGATTTTGATGAGTCCTCTCTCGAGTTCCAG
CGCAATATTCTTGAGCGTTCTGGGCTTGGAGAGGAGACTTATTTCCCTGA
AGCTATGCATGCTATTCCACCTAAGCCATCAATGGCTGCTGCCAGAGAAG
AGGCTGAGCAGGTCATGTATGGTGCGTTGGATAACCTTTTTAGTAATACA
AATGTTAATCCCAAAGATATTGGTATTCTTGTTGTCAATTGTAGTTTGTT
TATCCTACACCCGTCTTGTCAGCTATGAT
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