CX295588
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX295588 vs. ExPASy Swiss-Prot
Match: SUB2_CRYNE (ATP-dependent RNA helicase SUB2 OS=Cryptococcus neoformans GN=SUB2 PE=3 SV=1) HSP 1 Score: 291.582 bits (745), Expect = 2.994e-78 Identity = 147/226 (65.04%), Postives = 177/226 (78.32%), Query Frame = 2 Query: 68 PDSVATKANGEAA---KKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL--KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQSMMFSAHSARN-RPVCRNY 724 P + A + NG+ A KKG YVGIHS+GFRDFLLKPELLRAI D GFEHPSEVQ ECIPQAILG DV+CQAKSGMGKTAVFVL+ LQQ EP G+V+ ++LCHTRELAYQI +EF RFS ++ +++ VFYGG I +++L K +CP IVVGTPGR +AL RDK L+ V+HF+LDECDKMLE LDMRRDVQEIF+ TPH KQ MMFSA +++ R C+ + Sbjct: 33 PPAPAAETNGDKADGDKKGSYVGIHSTGFRDFLLKPELLRAISDLGFEHPSEVQQECIPQAILGTDVLCQAKSGMGKTAVFVLAALQQIEPVDGEVSIIILCHTRELAYQIKNEFTRFSKFMTNVRTGVFYGGTPISADQEILANKEKCPHIVVGTPGRTMALVRDKKLNASKVKHFVLDECDKMLEQLDMRRDVQEIFRATPHHKQVMMFSATLSKDIRATCKKF 258
BLAST of CX295588 vs. ExPASy Swiss-Prot
Match: SUB2_ASPOR (ATP-dependent RNA helicase sub2 OS=Aspergillus oryzae GN=sub2 PE=3 SV=1) HSP 1 Score: 290.812 bits (743), Expect = 5.106e-78 Identity = 152/237 (64.14%), Postives = 178/237 (75.11%), Query Frame = 2 Query: 65 APDSVATKANGEAAKKG--------------YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE--CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQSMMFSAH-SARNRPVCRNY 724 A + A ANG+AAKKG YVGIHS+GFRDFLLK ELLRAI D GFEHPSEVQ CIP AIL +DV+CQAKSG+GKTAVFVL+TL Q EP PG+ + LV+CHTRELAYQI +E+ RFS YLPD+K AVFYGG I+ ++L N+ P IVVGTPGR+ AL RDK LSL+NV+ F+LDECDKML+ +DMRRDVQEIF+ TP DKQ MMFSA S RPVC+ + Sbjct: 21 AATTAAPAANGDAAKKGDLTVSGGRPDKKGSYVGIHSTGFRDFLLKGELLRAITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDVEVLSNKESYPNIVVGTPGRLNALVRDKKLSLRNVKAFVLDECDKMLDQIDMRRDVQEIFRATPADKQVMMFSATLSQEIRPVCKKF 257
BLAST of CX295588 vs. ExPASy Swiss-Prot
Match: UAP56_CAEEL (Spliceosome RNA helicase BAT1 homolog OS=Caenorhabditis elegans GN=hel-1 PE=2 SV=1) HSP 1 Score: 289.656 bits (740), Expect = 1.138e-77 Identity = 146/213 (68.54%), Postives = 171/213 (80.28%), Query Frame = 2 Query: 95 GEAAK-KG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQSMMFSAHSARN-RPVCRNY 724 G+A K KG Y IHSSGFRDFLLKPE+LRAI D GFEHPSEVQHECIPQAILGMDV+CQAKSGMGKTAVFV++TLQQ EP G+V+ + +CHTRELA+QI E+ERFS YLP +KVAVF+GG+ IK ++ L N+CP IVVGTPGR+LALAR L L V++F+LDECDKM+ DMRRDVQEI KMTP KQ MMFSA + R VC+ + Sbjct: 26 GDARKTKGTYASIHSSGFRDFLLKPEILRAIGDCGFEHPSEVQHECIPQAILGMDVVCQAKSGMGKTAVFVITTLQQLEPVDGEVSVVCMCHTRELAFQISKEYERFSKYLPGVKVAVFFGGMAIKKDEERLANDCPHIVVGTPGRMLALARSGKLKLDKVKYFVLDECDKMIGDADMRRDVQEIVKMTPQQKQVMMFSATLPKELRTVCKRF 238
BLAST of CX295588 vs. ExPASy Swiss-Prot
Match: SUB2_PICST (ATP-dependent RNA helicase SUB2 OS=Pichia stipitis GN=SUB2 PE=3 SV=1) HSP 1 Score: 287.73 bits (735), Expect = 4.323e-77 Identity = 144/213 (67.61%), Postives = 171/213 (80.28%), Query Frame = 2 Query: 98 EAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIK--IHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQSMMFSAH-SARNRPVCRNY 724 EA KKG YVGIH++GFRDFLLKPELLRAI D GFEHPSEVQ CIPQ+ILG DV+CQAKSG+GKTAVFVLSTLQQ +P PG+++ LV+CHTRELAYQI +E+ RFS Y+PD+K VFYGG IK I K K+ CP IVV TPGR+ AL +K + L NV+ F++DECDK+LES+DMRRDVQ+IF+ TPH KQ MMFSA S RPVC+ + Sbjct: 36 EADKKGSYVGIHATGFRDFLLKPELLRAIGDCGFEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEISTLVICHTRELAYQIRNEYARFSKYMPDVKTEVFYGGTPIKRDIEKLKSKDTCPHIVVATPGRLHALVNEKAIRLSNVKSFVIDECDKVLESIDMRRDVQDIFRATPHQKQVMMFSATLSQEIRPVCKKF 248
BLAST of CX295588 vs. ExPASy Swiss-Prot
Match: SUB2_ASPNC (ATP-dependent RNA helicase sub2 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=sub2 PE=3 SV=1) HSP 1 Score: 287.73 bits (735), Expect = 4.323e-77 Identity = 148/218 (67.89%), Postives = 172/218 (78.90%), Query Frame = 2 Query: 83 TKANGEAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE--CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQSMMFSAH-SARNRPVCRNY 724 T + G KKG YVGIHS+GFRDFLLK ELLRAI D GFEHPSEVQ CIP AIL +DV+CQAKSG+GKTAVFVL+TL Q EP PG+ + LV+CHTRELAYQI +E+ RFS YLPD+K AVFYGG I+ +LL N+ P IVVGTPGR+ AL RDK LSL+NV+ F+LDECDKML+ +DMRRDVQEIF+ TP DKQ MMFSA S RPVC+ + Sbjct: 39 TVSGGRPDKKGSYVGIHSTGFRDFLLKEELLRAITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSILVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDVELLSNKESYPNIVVGTPGRLNALVRDKKLSLRNVKAFVLDECDKMLDQIDMRRDVQEIFRATPADKQVMMFSATLSQEIRPVCKKF 256
BLAST of CX295588 vs. ExPASy Swiss-Prot
Match: SUB2_LODEL (ATP-dependent RNA helicase SUB2 OS=Lodderomyces elongisporus GN=SUB2 PE=3 SV=1) HSP 1 Score: 286.96 bits (733), Expect = 7.373e-77 Identity = 142/213 (66.67%), Postives = 174/213 (81.69%), Query Frame = 2 Query: 98 EAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE--CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQSMMFSAHSARN-RPVCRNY 724 EA KKG YVGIH++GFRDFLLKPELLRAI D GFEHPSEVQ CIPQ+ILG DV+CQAKSG+GKTAVFVLSTLQQ +P G+++ LV+CHTRELAYQI +E+ RFS Y+PD+K VFYGG +K + LKN+ CP IVV TPGR+ AL ++K + L NV+ F++DECDK+LESLDMRRDVQ+IF+ TPH KQ MMFSA +++ RPVC+ + Sbjct: 36 EADKKGSYVGIHATGFRDFLLKPELLRAIGDCGFEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPVAGEISTLVICHTRELAYQIRNEYARFSKYMPDVKTEVFYGGTPVKRDIEKLKNKDTCPHIVVATPGRLHALVQEKAIRLNNVKSFVIDECDKVLESLDMRRDVQDIFRATPHQKQVMMFSATLSQDIRPVCKKF 248
BLAST of CX295588 vs. ExPASy Swiss-Prot
Match: SUB2_COCIM (ATP-dependent RNA helicase SUB2 OS=Coccidioides immitis GN=SUB2 PE=3 SV=1) HSP 1 Score: 286.574 bits (732), Expect = 9.630e-77 Identity = 148/239 (61.92%), Postives = 178/239 (74.48%), Query Frame = 2 Query: 59 AQAPDSVATKANGEAAKKG--------------YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL--KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQSMMFSAH-SARNRPVCRNY 724 A A + A ANG A KKG YVG+HS+GFRDFLLKPELLRAI D GFEHPSEVQ CIP AIL +DV+CQAKSG+GKTAVFVL+TL Q EP PG+ + LV+CHTRELAYQI +E+ RFS YLPD+K AVFYGG ++ ++L K+ P IVVGTPGR+ AL R+K LSL+N++ F+LDECDKML+ +DMRRDVQEIF+ TP DKQ MMFSA S RP+C+ + Sbjct: 21 AAAAATAAAAANGAAVKKGDLTVSGARADKKGSYVGVHSTGFRDFLLKPELLRAITDCGFEHPSEVQQVCIPTAILKVDVLCQAKSGLGKTAVFVLTTLNQLEPVPGECSILVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPMQKDIEVLSSKDTYPNIVVGTPGRLNALVREKKLSLRNIKAFVLDECDKMLDQIDMRRDVQEIFRSTPADKQVMMFSATLSQEIRPICKKF 259
BLAST of CX295588 vs. ExPASy Swiss-Prot
Match: SUB2_CANGA (ATP-dependent RNA helicase SUB2 OS=Candida glabrata GN=SUB2 PE=3 SV=1) HSP 1 Score: 286.574 bits (732), Expect = 9.630e-77 Identity = 144/222 (64.86%), Postives = 177/222 (79.73%), Query Frame = 2 Query: 71 DSVATKANGEAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE--CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQSMMFSAH-SARNRPVCRNY 724 ++ AT+ NGEA KKG YVGIHS+GF+DFLLKPEL RAI+D GFEHPSEVQ IPQ+I G DV+CQAKSG+GKTAVFVLSTLQQ +P PG+V+ +V+C+ RELAYQI +E+ RFS Y+PD++ AVFYGG I +LLKN+ P IVV TPGR+ AL RDK + L +V++F++DECDK+LE LDMRRDVQEIF+ TP DKQ MMFSA S RP+CR + Sbjct: 33 ENEATQENGEADKKGSYVGIHSTGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVSVVVICNARELAYQIRNEYLRFSKYMPDVRTAVFYGGTPIAKDAELLKNKDTAPHIVVATPGRLKALVRDKMIDLSHVKNFVIDECDKVLEELDMRRDVQEIFRATPRDKQVMMFSATLSQEIRPICRRF 254
BLAST of CX295588 vs. ExPASy Swiss-Prot
Match: SUB2_ASPCL (ATP-dependent RNA helicase sub2 OS=Aspergillus clavatus GN=sub2 PE=3 SV=1) HSP 1 Score: 286.574 bits (732), Expect = 9.630e-77 Identity = 148/226 (65.49%), Postives = 174/226 (76.99%), Query Frame = 2 Query: 59 AQAPDSVATKANGEAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE--CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQSMMFSAH-SARNRPVCRNY 724 AQ T + G KKG YVGIHS+GFRDFLLK ELLRAI D GFEHPSEVQ CIP AIL +DV+CQAKSG+GKTAVFVL+TL Q EP PG+ + LV+CHTRELAYQI +E+ RFS YLPD+K AVFYGG I+ ++L N+ P IVVGTPGR+ AL RDK LSL+NV+ F+LDECDKML+ +DMRRDVQEIF+ TP DKQ MMFSA S RP+C+ + Sbjct: 32 AQDKKGDLTVSGGRPDKKGSYVGIHSTGFRDFLLKGELLRAITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDVEVLSNKESYPNIVVGTPGRLNALVRDKKLSLRNVKAFVLDECDKMLDQIDMRRDVQEIFRATPADKQVMMFSATLSQEIRPICKKF 257
BLAST of CX295588 vs. ExPASy Swiss-Prot
Match: SUB2_CHAGB (ATP-dependent RNA helicase SUB2 OS=Chaetomium globosum GN=SUB2 PE=3 SV=1) HSP 1 Score: 285.804 bits (730), Expect = 1.643e-76 Identity = 149/229 (65.07%), Postives = 175/229 (76.42%), Query Frame = 2 Query: 65 APDSVATKANGEAA-----KKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE--CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQSMMFSAHSARN-RPVCRNY 724 AP S K + AA KKG YVGIHS+GFRDFLLKPELLRAI D GFEHPSEVQ CIPQA+LG D+ICQAKSG+GKTAVFVL+TLQQ EP G+ + LV+CHTRELA+QI +E+ RFS Y+PDIK VFYGG I+ ++LKN+ P I+VGTPGR+ AL RDK L L NVR F+LDECDKML+ +DMRRDVQEIF+ TP KQ MMFSA A +P+CR + Sbjct: 21 APASNGKKGDAAAAAQNVDKKGSYVGIHSTGFRDFLLKPELLRAIADCGFEHPSEVQQTCIPQAMLGGDIICQAKSGLGKTAVFVLTTLQQVEPVAGECSVLVMCHTRELAFQIRNEYNRFSKYMPDIKTGVFYGGTPIQKDAEVLKNKETHPHIIVGTPGRLNALVRDKHLRLGNVRMFVLDECDKMLDQIDMRRDVQEIFRATPQQKQVMMFSATLADEIKPICRKF 249 The following BLAST results are available for this feature:
BLAST of CX295588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX295588 ID=CX295588; Name=CX295588; organism=Citrus clementina; type=EST; length=738bpback to top |