CX295588

Overview
NameCX295588
Unique NameCX295588
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295588 vs. ExPASy Swiss-Prot
Match: SUB2_CRYNE (ATP-dependent RNA helicase SUB2 OS=Cryptococcus neoformans GN=SUB2 PE=3 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 2.994e-78
Identity = 147/226 (65.04%), Postives = 177/226 (78.32%), Query Frame = 2
Query:   68 PDSVATKANGEAA---KKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL--KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQSMMFSAHSARN-RPVCRNY 724
            P + A + NG+ A   KKG YVGIHS+GFRDFLLKPELLRAI D GFEHPSEVQ ECIPQAILG DV+CQAKSGMGKTAVFVL+ LQQ EP  G+V+ ++LCHTRELAYQI +EF RFS ++ +++  VFYGG  I   +++L  K +CP IVVGTPGR +AL RDK L+   V+HF+LDECDKMLE LDMRRDVQEIF+ TPH KQ MMFSA  +++ R  C+ +
Sbjct:   33 PPAPAAETNGDKADGDKKGSYVGIHSTGFRDFLLKPELLRAISDLGFEHPSEVQQECIPQAILGTDVLCQAKSGMGKTAVFVLAALQQIEPVDGEVSIIILCHTRELAYQIKNEFTRFSKFMTNVRTGVFYGGTPISADQEILANKEKCPHIVVGTPGRTMALVRDKKLNASKVKHFVLDECDKMLEQLDMRRDVQEIFRATPHHKQVMMFSATLSKDIRATCKKF 258          
BLAST of CX295588 vs. ExPASy Swiss-Prot
Match: SUB2_ASPOR (ATP-dependent RNA helicase sub2 OS=Aspergillus oryzae GN=sub2 PE=3 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 5.106e-78
Identity = 152/237 (64.14%), Postives = 178/237 (75.11%), Query Frame = 2
Query:   65 APDSVATKANGEAAKKG--------------YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE--CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQSMMFSAH-SARNRPVCRNY 724
            A  + A  ANG+AAKKG              YVGIHS+GFRDFLLK ELLRAI D GFEHPSEVQ  CIP AIL +DV+CQAKSG+GKTAVFVL+TL Q EP PG+ + LV+CHTRELAYQI +E+ RFS YLPD+K AVFYGG  I+   ++L N+   P IVVGTPGR+ AL RDK LSL+NV+ F+LDECDKML+ +DMRRDVQEIF+ TP DKQ MMFSA  S   RPVC+ +
Sbjct:   21 AATTAAPAANGDAAKKGDLTVSGGRPDKKGSYVGIHSTGFRDFLLKGELLRAITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDVEVLSNKESYPNIVVGTPGRLNALVRDKKLSLRNVKAFVLDECDKMLDQIDMRRDVQEIFRATPADKQVMMFSATLSQEIRPVCKKF 257          
BLAST of CX295588 vs. ExPASy Swiss-Prot
Match: UAP56_CAEEL (Spliceosome RNA helicase BAT1 homolog OS=Caenorhabditis elegans GN=hel-1 PE=2 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 1.138e-77
Identity = 146/213 (68.54%), Postives = 171/213 (80.28%), Query Frame = 2
Query:   95 GEAAK-KG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQSMMFSAHSARN-RPVCRNY 724
            G+A K KG Y  IHSSGFRDFLLKPE+LRAI D GFEHPSEVQHECIPQAILGMDV+CQAKSGMGKTAVFV++TLQQ EP  G+V+ + +CHTRELA+QI  E+ERFS YLP +KVAVF+GG+ IK  ++ L N+CP IVVGTPGR+LALAR   L L  V++F+LDECDKM+   DMRRDVQEI KMTP  KQ MMFSA   +  R VC+ +
Sbjct:   26 GDARKTKGTYASIHSSGFRDFLLKPEILRAIGDCGFEHPSEVQHECIPQAILGMDVVCQAKSGMGKTAVFVITTLQQLEPVDGEVSVVCMCHTRELAFQISKEYERFSKYLPGVKVAVFFGGMAIKKDEERLANDCPHIVVGTPGRMLALARSGKLKLDKVKYFVLDECDKMIGDADMRRDVQEIVKMTPQQKQVMMFSATLPKELRTVCKRF 238          
BLAST of CX295588 vs. ExPASy Swiss-Prot
Match: SUB2_PICST (ATP-dependent RNA helicase SUB2 OS=Pichia stipitis GN=SUB2 PE=3 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 4.323e-77
Identity = 144/213 (67.61%), Postives = 171/213 (80.28%), Query Frame = 2
Query:   98 EAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIK--IHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQSMMFSAH-SARNRPVCRNY 724
            EA KKG YVGIH++GFRDFLLKPELLRAI D GFEHPSEVQ  CIPQ+ILG DV+CQAKSG+GKTAVFVLSTLQQ +P PG+++ LV+CHTRELAYQI +E+ RFS Y+PD+K  VFYGG  IK  I K   K+ CP IVV TPGR+ AL  +K + L NV+ F++DECDK+LES+DMRRDVQ+IF+ TPH KQ MMFSA  S   RPVC+ +
Sbjct:   36 EADKKGSYVGIHATGFRDFLLKPELLRAIGDCGFEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEISTLVICHTRELAYQIRNEYARFSKYMPDVKTEVFYGGTPIKRDIEKLKSKDTCPHIVVATPGRLHALVNEKAIRLSNVKSFVIDECDKVLESIDMRRDVQDIFRATPHQKQVMMFSATLSQEIRPVCKKF 248          
BLAST of CX295588 vs. ExPASy Swiss-Prot
Match: SUB2_ASPNC (ATP-dependent RNA helicase sub2 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=sub2 PE=3 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 4.323e-77
Identity = 148/218 (67.89%), Postives = 172/218 (78.90%), Query Frame = 2
Query:   83 TKANGEAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE--CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQSMMFSAH-SARNRPVCRNY 724
            T + G   KKG YVGIHS+GFRDFLLK ELLRAI D GFEHPSEVQ  CIP AIL +DV+CQAKSG+GKTAVFVL+TL Q EP PG+ + LV+CHTRELAYQI +E+ RFS YLPD+K AVFYGG  I+   +LL N+   P IVVGTPGR+ AL RDK LSL+NV+ F+LDECDKML+ +DMRRDVQEIF+ TP DKQ MMFSA  S   RPVC+ +
Sbjct:   39 TVSGGRPDKKGSYVGIHSTGFRDFLLKEELLRAITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSILVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDVELLSNKESYPNIVVGTPGRLNALVRDKKLSLRNVKAFVLDECDKMLDQIDMRRDVQEIFRATPADKQVMMFSATLSQEIRPVCKKF 256          
BLAST of CX295588 vs. ExPASy Swiss-Prot
Match: SUB2_LODEL (ATP-dependent RNA helicase SUB2 OS=Lodderomyces elongisporus GN=SUB2 PE=3 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 7.373e-77
Identity = 142/213 (66.67%), Postives = 174/213 (81.69%), Query Frame = 2
Query:   98 EAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE--CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQSMMFSAHSARN-RPVCRNY 724
            EA KKG YVGIH++GFRDFLLKPELLRAI D GFEHPSEVQ  CIPQ+ILG DV+CQAKSG+GKTAVFVLSTLQQ +P  G+++ LV+CHTRELAYQI +E+ RFS Y+PD+K  VFYGG  +K   + LKN+  CP IVV TPGR+ AL ++K + L NV+ F++DECDK+LESLDMRRDVQ+IF+ TPH KQ MMFSA  +++ RPVC+ +
Sbjct:   36 EADKKGSYVGIHATGFRDFLLKPELLRAIGDCGFEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPVAGEISTLVICHTRELAYQIRNEYARFSKYMPDVKTEVFYGGTPVKRDIEKLKNKDTCPHIVVATPGRLHALVQEKAIRLNNVKSFVIDECDKVLESLDMRRDVQDIFRATPHQKQVMMFSATLSQDIRPVCKKF 248          
BLAST of CX295588 vs. ExPASy Swiss-Prot
Match: SUB2_COCIM (ATP-dependent RNA helicase SUB2 OS=Coccidioides immitis GN=SUB2 PE=3 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 9.630e-77
Identity = 148/239 (61.92%), Postives = 178/239 (74.48%), Query Frame = 2
Query:   59 AQAPDSVATKANGEAAKKG--------------YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL--KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQSMMFSAH-SARNRPVCRNY 724
            A A  + A  ANG A KKG              YVG+HS+GFRDFLLKPELLRAI D GFEHPSEVQ  CIP AIL +DV+CQAKSG+GKTAVFVL+TL Q EP PG+ + LV+CHTRELAYQI +E+ RFS YLPD+K AVFYGG  ++   ++L  K+  P IVVGTPGR+ AL R+K LSL+N++ F+LDECDKML+ +DMRRDVQEIF+ TP DKQ MMFSA  S   RP+C+ +
Sbjct:   21 AAAAATAAAAANGAAVKKGDLTVSGARADKKGSYVGVHSTGFRDFLLKPELLRAITDCGFEHPSEVQQVCIPTAILKVDVLCQAKSGLGKTAVFVLTTLNQLEPVPGECSILVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPMQKDIEVLSSKDTYPNIVVGTPGRLNALVREKKLSLRNIKAFVLDECDKMLDQIDMRRDVQEIFRSTPADKQVMMFSATLSQEIRPICKKF 259          
BLAST of CX295588 vs. ExPASy Swiss-Prot
Match: SUB2_CANGA (ATP-dependent RNA helicase SUB2 OS=Candida glabrata GN=SUB2 PE=3 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 9.630e-77
Identity = 144/222 (64.86%), Postives = 177/222 (79.73%), Query Frame = 2
Query:   71 DSVATKANGEAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE--CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQSMMFSAH-SARNRPVCRNY 724
            ++ AT+ NGEA KKG YVGIHS+GF+DFLLKPEL RAI+D GFEHPSEVQ   IPQ+I G DV+CQAKSG+GKTAVFVLSTLQQ +P PG+V+ +V+C+ RELAYQI +E+ RFS Y+PD++ AVFYGG  I    +LLKN+   P IVV TPGR+ AL RDK + L +V++F++DECDK+LE LDMRRDVQEIF+ TP DKQ MMFSA  S   RP+CR +
Sbjct:   33 ENEATQENGEADKKGSYVGIHSTGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVSVVVICNARELAYQIRNEYLRFSKYMPDVRTAVFYGGTPIAKDAELLKNKDTAPHIVVATPGRLKALVRDKMIDLSHVKNFVIDECDKVLEELDMRRDVQEIFRATPRDKQVMMFSATLSQEIRPICRRF 254          
BLAST of CX295588 vs. ExPASy Swiss-Prot
Match: SUB2_ASPCL (ATP-dependent RNA helicase sub2 OS=Aspergillus clavatus GN=sub2 PE=3 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 9.630e-77
Identity = 148/226 (65.49%), Postives = 174/226 (76.99%), Query Frame = 2
Query:   59 AQAPDSVATKANGEAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE--CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQSMMFSAH-SARNRPVCRNY 724
            AQ      T + G   KKG YVGIHS+GFRDFLLK ELLRAI D GFEHPSEVQ  CIP AIL +DV+CQAKSG+GKTAVFVL+TL Q EP PG+ + LV+CHTRELAYQI +E+ RFS YLPD+K AVFYGG  I+   ++L N+   P IVVGTPGR+ AL RDK LSL+NV+ F+LDECDKML+ +DMRRDVQEIF+ TP DKQ MMFSA  S   RP+C+ +
Sbjct:   32 AQDKKGDLTVSGGRPDKKGSYVGIHSTGFRDFLLKGELLRAITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDVEVLSNKESYPNIVVGTPGRLNALVRDKKLSLRNVKAFVLDECDKMLDQIDMRRDVQEIFRATPADKQVMMFSATLSQEIRPICKKF 257          
BLAST of CX295588 vs. ExPASy Swiss-Prot
Match: SUB2_CHAGB (ATP-dependent RNA helicase SUB2 OS=Chaetomium globosum GN=SUB2 PE=3 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 1.643e-76
Identity = 149/229 (65.07%), Postives = 175/229 (76.42%), Query Frame = 2
Query:   65 APDSVATKANGEAA-----KKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE--CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQSMMFSAHSARN-RPVCRNY 724
            AP S   K +  AA     KKG YVGIHS+GFRDFLLKPELLRAI D GFEHPSEVQ  CIPQA+LG D+ICQAKSG+GKTAVFVL+TLQQ EP  G+ + LV+CHTRELA+QI +E+ RFS Y+PDIK  VFYGG  I+   ++LKN+   P I+VGTPGR+ AL RDK L L NVR F+LDECDKML+ +DMRRDVQEIF+ TP  KQ MMFSA  A   +P+CR +
Sbjct:   21 APASNGKKGDAAAAAQNVDKKGSYVGIHSTGFRDFLLKPELLRAIADCGFEHPSEVQQTCIPQAMLGGDIICQAKSGLGKTAVFVLTTLQQVEPVAGECSVLVMCHTRELAFQIRNEYNRFSKYMPDIKTGVFYGGTPIQKDAEVLKNKETHPHIIVGTPGRLNALVRDKHLRLGNVRMFVLDECDKMLDQIDMRRDVQEIFRATPQQKQVMMFSATLADEIKPICRKF 249          
The following BLAST results are available for this feature:
BLAST of CX295588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUB2_CRYNE2.994e-7865.04ATP-dependent RNA helicase SUB2 OS=Cryptococcus ne... [more]
SUB2_ASPOR5.106e-7864.14ATP-dependent RNA helicase sub2 OS=Aspergillus ory... [more]
UAP56_CAEEL1.138e-7768.54Spliceosome RNA helicase BAT1 homolog OS=Caenorhab... [more]
SUB2_PICST4.323e-7767.61ATP-dependent RNA helicase SUB2 OS=Pichia stipitis... [more]
SUB2_ASPNC4.323e-7767.89ATP-dependent RNA helicase sub2 OS=Aspergillus nig... [more]
SUB2_LODEL7.373e-7766.67ATP-dependent RNA helicase SUB2 OS=Lodderomyces el... [more]
SUB2_COCIM9.630e-7761.92ATP-dependent RNA helicase SUB2 OS=Coccidioides im... [more]
SUB2_CANGA9.630e-7764.86ATP-dependent RNA helicase SUB2 OS=Candida glabrat... [more]
SUB2_ASPCL9.630e-7765.49ATP-dependent RNA helicase sub2 OS=Aspergillus cla... [more]
SUB2_CHAGB1.643e-7665.07ATP-dependent RNA helicase SUB2 OS=Chaetomium glob... [more]

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Properties
Property NameValue
Genbank descriptionC05073G09SK DroRLeaf1 Citrus clementina cDNA clone C05073G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295588 ID=CX295588; Name=CX295588; organism=Citrus clementina; type=EST; length=738bp
TGGGAGAGAAAGAGACAACGAGTACGAGGATGAGCTTCTCGACTACGAGG
AAGAAGATGCTCAAGCTCCCGATTCCGTCGCTACCAAAGCAAACGGCGAA
GCCGCCAAGAAGGGCTATGTTGGTATACACAGTTCAGGATTCAGAGACTT
TCTTTTGAAGCCGGAACTTCTTCGTGCAATTGTGGACTCAGGATTTGAGC
ATCCTTCAGAAGTGCAACATGAATGCATACCTCAAGCGATTCTGGGCATG
GATGTTATTTGCCAAGCTAAATCAGGGATGGGGAAGACTGCTGTGTTTGT
TCTGTCAACTCTTCAGCAAACAGAGCCAAATCCAGGCCAAGTTACTGCAC
TTGTTTTATGTCACACTAGAGAGTTAGCTTATCAGATCTGCCATGAGTTT
GAGAGGTTCAGTACTTACCTGCCTGATATCAAGGTTGCTGTCTTTTATGG
TGGAGTTAATATAAAAATTCACAAAGATTTGCTGAAAAACGAATGTCCCC
AAATTGTTGTTGGGACTCCTGGAAGGATACTAGCTCTTGCTAGAGATAAA
GACCTCTCTTTGAAGAATGTGAGGCATTTTATCCTTGATGAATGCGATAA
GATGCTGGAATCTCTTGACATGAGAAGAGATGTGCAAGAGATTTTCAAGA
TGACTCCTCATGACAAGCAAAGTATGATGTTTTCAGCACACTCAGCAAGG
AATCGCCCAGTCTGCAGAAATTATGCAGATCCATGGAA
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