CX295588

Overview
NameCX295588
Unique NameCX295588
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295588 vs. ExPASy Swiss-Prot
Match: DHH1_ASPTN (ATP-dependent RNA helicase dhh1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=dhh1 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.968e-29
Identity = 74/184 (40.22%), Postives = 108/184 (58.70%), Query Frame = 2
Query:  140 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK-NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQSMMFSA 688
            F DF +K EL+  I ++GFE PS +Q E IP A+ G D++ +AK+G GKTA FV+ TL++  P   +  AL+L  TRELA Q  H  +    +L  I V V  GG  +    D+++ N+   I+VGTPGR+L LA      L     F++DE DK+L S +    ++++    P D+Q M+FSA
Sbjct:   49 FEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLERINPKSTKTQALILVPTRELALQTSHVCKTLGKHL-GINVMVTTGGTGLM--DDIIRLNDAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLL-SPEFTPVIEQLLSFHPKDRQVMLFSA 228          
BLAST of CX295588 vs. ExPASy Swiss-Prot
Match: DHH1_ASPOR (ATP-dependent RNA helicase dhh1 OS=Aspergillus oryzae GN=dhh1 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.968e-29
Identity = 74/184 (40.22%), Postives = 108/184 (58.70%), Query Frame = 2
Query:  140 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK-NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQSMMFSA 688
            F DF +K EL+  I ++GFE PS +Q E IP A+ G D++ +AK+G GKTA FV+ TL++  P   +  AL+L  TRELA Q  H  +    +L  I V V  GG  +    D+++ N+   I+VGTPGR+L LA      L     F++DE DK+L S +    ++++    P D+Q M+FSA
Sbjct:   49 FEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLERINPKSTKTQALILVPTRELALQTSHVCKTLGKHL-GINVMVTTGGTGLM--DDIIRLNDAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLL-SPEFTPVIEQLLSFHPKDRQVMLFSA 228          
BLAST of CX295588 vs. ExPASy Swiss-Prot
Match: DHH1_ASPNC (ATP-dependent RNA helicase dhh1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=dhh1 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.968e-29
Identity = 74/184 (40.22%), Postives = 108/184 (58.70%), Query Frame = 2
Query:  140 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK-NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQSMMFSA 688
            F DF +K EL+  I ++GFE PS +Q E IP A+ G D++ +AK+G GKTA FV+ TL++  P   +  AL+L  TRELA Q  H  +    +L  I V V  GG  +    D+++ N+   I+VGTPGR+L LA      L     F++DE DK+L S +    ++++    P D+Q M+FSA
Sbjct:   49 FEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLERINPKSTKTQALILVPTRELALQTSHVCKTLGKHL-GINVMVTTGGTGLM--DDIIRLNDAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLL-SPEFTPVIEQLLSFHPKDRQVMLFSA 228          
BLAST of CX295588 vs. ExPASy Swiss-Prot
Match: DHH1_PHANO (ATP-dependent RNA helicase DHH1 OS=Phaeosphaeria nodorum GN=DHH1 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.570e-29
Identity = 76/184 (41.30%), Postives = 108/184 (58.70%), Query Frame = 2
Query:  140 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP-QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQSMMFSA 688
            F DF +K EL+  I ++GFE PS +Q E IP A+ G D++ +AK+G GKTA FV+ TL++  P   +  AL+L  TRELA Q     +    +L  I V V  GG  +K   D+++   P  I+VGTPGRIL LA      L   + F++DE DK+L S +    V+++    P D+Q M+FSA
Sbjct:   51 FEDFFIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLERVNPKISKTQALILVPTRELALQTSQVCKTLGKHL-GINVMVSTGGTGLK--DDIIRLSDPVHIIVGTPGRILDLAGKGVADLSTCQTFVMDEADKLL-SPEFTPVVEQLLGFHPKDRQVMLFSA 230          
BLAST of CX295588 vs. ExPASy Swiss-Prot
Match: DHH1_GIBZE (ATP-dependent RNA helicase DHH1 OS=Gibberella zeae GN=DHH1 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.570e-29
Identity = 75/184 (40.76%), Postives = 110/184 (59.78%), Query Frame = 2
Query:  140 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP-QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQSMMFSA 688
            F +F LK +LL  I ++GFE PS +Q E IP A+ G D++ +AK+G GKTA FV+ TL++  P   ++  L+L  TRELA Q     +    +L  I V V  GG  ++   D+++ + P  IVVGTPGRIL LA      L     FI+DE DK+L S++    ++++ +  P D+Q M+FSA
Sbjct:   44 FENFALKRDLLMGIFEAGFEKPSPIQEESIPVALTGRDILARAKNGTGKTAAFVIPTLERINPKISKIQCLILVPTRELAMQTSQVCKTLGKHL-GINVMVTTGGTGLR--DDIIRLQDPVHIVVGTPGRILDLAGKNVADLSECPMFIMDEADKLL-SIEFTPVIEQLLQFHPKDRQVMLFSA 223          
BLAST of CX295588 vs. ExPASy Swiss-Prot
Match: DHH1_CRYNV (ATP-dependent RNA helicase VAD1 OS=Cryptococcus neoformans var. grubii GN=VAD1 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.725e-29
Identity = 71/186 (38.17%), Postives = 109/186 (58.60%), Query Frame = 2
Query:  134 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP-QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQSMMFSA 688
            S F DF L+ ELL  I  +GFE PS +Q + IP A+ G D++ +AK+G GKTA F++ TL +   +   + AL+L  TRELA Q     +    ++P+++V +  GG  ++   D+L+ + P  I+VGTPGRIL L       L     F++DE DK+L S D    +++   + P ++Q M+FSA
Sbjct:   36 SRFEDFGLRRELLMGIYTAGFERPSPIQEQAIPMALTGRDILARAKNGTGKTASFIIPTLNRINTSLSHIQALILVPTRELALQTSQVCKTLGAHIPNLQVMITTGGTTLR--DDILRLQQPVHILVGTPGRILDLGSKGIAGLNKCGIFVMDEADKLL-SEDFMPVIEQTLALCPQERQVMLFSA 218          
BLAST of CX295588 vs. ExPASy Swiss-Prot
Match: RRP3_CRYNE (ATP-dependent rRNA helicase RRP3 OS=Cryptococcus neoformans GN=RRP3 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.765e-29
Identity = 72/188 (38.30%), Postives = 113/188 (60.11%), Query Frame = 2
Query:  128 HSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRIL-ALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQSMMFSA 688
            H+  F D  + PEL RA    GF+ PS++Q E IP A+ G D+I  A++G GKTA F L  LQ    NP    ALVL  TRELAYQI  +     + +  ++ AV  GG+++ + + +  ++ P I+V TPGR++  L   K  SLK++++ ++DE D++L+ LD    + +I K+ P ++ + +FSA
Sbjct:   36 HNKTFADLGISPELCRACASMGFKKPSDIQAEAIPHALEGKDIIGLAQTGSGKTAAFSLPILQTLWENPQPFFALVLAPTRELAYQISQQVTSLGSGI-GVRTAVLVGGMDM-MSQSIALSKRPHIIVATPGRLMDHLENTKGFSLKSLKYLVMDEADRLLD-LDFGPIIDKILKVIPKERNTYLFSA 220          
BLAST of CX295588 vs. ExPASy Swiss-Prot
Match: DHH1_NEOFI (ATP-dependent RNA helicase dhh1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=dhh1 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.666e-28
Identity = 73/184 (39.67%), Postives = 107/184 (58.15%), Query Frame = 2
Query:  140 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK-NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQSMMFSA 688
            F DF +K EL+  I ++GFE PS +Q E IP A+ G D++ +AK+G GKTA FV+ TL++  P   +  AL+L  TRELA Q     +    +L  I V V  GG  +    D+++ N+   I+VGTPGR+L LA      L     F++DE DK+L S +    ++++    P D+Q M+FSA
Sbjct:   49 FEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLERINPKSTKTQALILVPTRELALQTSQVCKTLGKHL-GINVMVTTGGTGLM--DDIIRLNDAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLL-SPEFTPVIEQLLSFHPKDRQVMLFSA 228          
BLAST of CX295588 vs. ExPASy Swiss-Prot
Match: DHH1_ASPFU (ATP-dependent RNA helicase dhh1 OS=Aspergillus fumigatus GN=dhh1 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.666e-28
Identity = 73/184 (39.67%), Postives = 107/184 (58.15%), Query Frame = 2
Query:  140 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK-NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQSMMFSA 688
            F DF +K EL+  I ++GFE PS +Q E IP A+ G D++ +AK+G GKTA FV+ TL++  P   +  AL+L  TRELA Q     +    +L  I V V  GG  +    D+++ N+   I+VGTPGR+L LA      L     F++DE DK+L S +    ++++    P D+Q M+FSA
Sbjct:   49 FEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLERINPKSTKTQALILVPTRELALQTSQVCKTLGKHL-GINVMVTTGGTGLM--DDIIRLNDAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLL-SPEFTPVIEQLLSFHPKDRQVMLFSA 228          
BLAST of CX295588 vs. ExPASy Swiss-Prot
Match: DHH1_ASPCL (ATP-dependent RNA helicase dhh1 OS=Aspergillus clavatus GN=dhh1 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.666e-28
Identity = 73/184 (39.67%), Postives = 107/184 (58.15%), Query Frame = 2
Query:  140 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK-NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQSMMFSA 688
            F DF +K EL+  I ++GFE PS +Q E IP A+ G D++ +AK+G GKTA FV+ TL++  P   +  AL+L  TRELA Q     +    +L  I V V  GG  +    D+++ N+   I+VGTPGR+L LA      L     F++DE DK+L S +    ++++    P D+Q M+FSA
Sbjct:   49 FEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLERINPKSTKTQALILVPTRELALQTSQVCKTLGKHL-GINVMVTTGGTGLM--DDIIRLNDAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLL-SPEFTPVIEQLLSFHPKDRQVMLFSA 228          
The following BLAST results are available for this feature:
BLAST of CX295588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DHH1_ASPTN1.968e-2940.22ATP-dependent RNA helicase dhh1 OS=Aspergillus ter... [more]
DHH1_ASPOR1.968e-2940.22ATP-dependent RNA helicase dhh1 OS=Aspergillus ory... [more]
DHH1_ASPNC1.968e-2940.22ATP-dependent RNA helicase dhh1 OS=Aspergillus nig... [more]
DHH1_PHANO2.570e-2941.30ATP-dependent RNA helicase DHH1 OS=Phaeosphaeria n... [more]
DHH1_GIBZE2.570e-2940.76ATP-dependent RNA helicase DHH1 OS=Gibberella zeae... [more]
DHH1_CRYNV5.725e-2938.17ATP-dependent RNA helicase VAD1 OS=Cryptococcus ne... [more]
RRP3_CRYNE9.765e-2938.30ATP-dependent rRNA helicase RRP3 OS=Cryptococcus n... [more]
DHH1_NEOFI1.666e-2839.67ATP-dependent RNA helicase dhh1 OS=Neosartorya fis... [more]
DHH1_ASPFU1.666e-2839.67ATP-dependent RNA helicase dhh1 OS=Aspergillus fum... [more]
DHH1_ASPCL1.666e-2839.67ATP-dependent RNA helicase dhh1 OS=Aspergillus cla... [more]

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Properties
Property NameValue
Genbank descriptionC05073G09SK DroRLeaf1 Citrus clementina cDNA clone C05073G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295588 ID=CX295588; Name=CX295588; organism=Citrus clementina; type=EST; length=738bp
TGGGAGAGAAAGAGACAACGAGTACGAGGATGAGCTTCTCGACTACGAGG
AAGAAGATGCTCAAGCTCCCGATTCCGTCGCTACCAAAGCAAACGGCGAA
GCCGCCAAGAAGGGCTATGTTGGTATACACAGTTCAGGATTCAGAGACTT
TCTTTTGAAGCCGGAACTTCTTCGTGCAATTGTGGACTCAGGATTTGAGC
ATCCTTCAGAAGTGCAACATGAATGCATACCTCAAGCGATTCTGGGCATG
GATGTTATTTGCCAAGCTAAATCAGGGATGGGGAAGACTGCTGTGTTTGT
TCTGTCAACTCTTCAGCAAACAGAGCCAAATCCAGGCCAAGTTACTGCAC
TTGTTTTATGTCACACTAGAGAGTTAGCTTATCAGATCTGCCATGAGTTT
GAGAGGTTCAGTACTTACCTGCCTGATATCAAGGTTGCTGTCTTTTATGG
TGGAGTTAATATAAAAATTCACAAAGATTTGCTGAAAAACGAATGTCCCC
AAATTGTTGTTGGGACTCCTGGAAGGATACTAGCTCTTGCTAGAGATAAA
GACCTCTCTTTGAAGAATGTGAGGCATTTTATCCTTGATGAATGCGATAA
GATGCTGGAATCTCTTGACATGAGAAGAGATGTGCAAGAGATTTTCAAGA
TGACTCCTCATGACAAGCAAAGTATGATGTTTTCAGCACACTCAGCAAGG
AATCGCCCAGTCTGCAGAAATTATGCAGATCCATGGAA
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