CX295588

Overview
NameCX295588
Unique NameCX295588
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295588 vs. ExPASy Swiss-Prot
Match: RH12_ORYSJ (DEAD-box ATP-dependent RNA helicase 12 OS=Oryza sativa subsp. japonica GN=Os10g0503700 PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 8.266e-28
Identity = 70/184 (38.04%), Postives = 109/184 (59.24%), Query Frame = 2
Query:  140 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP-QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQSMMFSA 688
            F D+ LK ELL  I + GFE PS +Q E IP A+ G D++ +AK+G GKTA F +  L++ +P    +  ++L  TRELA Q     +    YL +I+V V  GG ++K   D+++   P  ++VGTPGRIL L R     LK+    ++DE DK+L + + +  ++++    P ++Q +MFSA
Sbjct:  149 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDPEKNAIQVVILVPTRELALQTSQVCKELGKYL-NIQVMVSTGGTSLK--DDIMRLYQPVHLLVGTPGRILDLTRKGICVLKDCSMLVMDEADKLL-APEFQPSIEQLIHFLPANRQLLMFSA 328          
BLAST of CX295588 vs. ExPASy Swiss-Prot
Match: DEAD_KLEPN (Cold-shock DEAD box protein A OS=Klebsiella pneumoniae GN=deaD PE=3 SV=3)

HSP 1 Score: 124.02 bits (310), Expect = 8.266e-28
Identity = 72/183 (39.34%), Postives = 97/183 (53.01%), Query Frame = 2
Query:  140 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQSMMFSA 688
            F D  LK  +L A+ D G+E PS +Q ECIP  + G DV+  A++G GKTA F L  L   +P       LVL  TRELA Q+      FS ++  + V   YGG    +    L+ + PQIVVGTPGR+L   +   L L  +   +LDE D+ML  +    DV+ I    P   Q+ +FSA
Sbjct:    8 FADLGLKAPILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNNIDPELRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALR-QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLR-MGFIEDVETIMAQIPEGHQTALFSA 188          
BLAST of CX295588 vs. ExPASy Swiss-Prot
Match: RH6_ORYSJ (DEAD-box ATP-dependent RNA helicase 6 OS=Oryza sativa subsp. japonica GN=Os04g0533000 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.080e-27
Identity = 71/184 (38.59%), Postives = 109/184 (59.24%), Query Frame = 2
Query:  140 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP-QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQSMMFSA 688
            F D+ LK ELL  I + GFE PS +Q E IP A+ G D++ +AK+G GKTA F +  L++ + +   +  ++L  TRELA Q     +    +L  I+V V  GG ++K   D+++   P  ++VGTPGRIL L +     LKN    ++DE DK+L S + +  +QE+ +  P ++Q +MFSA
Sbjct:  126 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDKNAIQVVILVPTRELALQTSQVCKELGKHL-KIQVMVTTGGTSLK--DDIVRLYQPVHLLVGTPGRILDLTKKGVCVLKNCSMLVMDEADKLL-SPEFQPSIQELIRYLPSNRQILMFSA 305          
BLAST of CX295588 vs. ExPASy Swiss-Prot
Match: IF4A_DROME (Eukaryotic initiation factor 4A OS=Drosophila melanogaster GN=eIF-4a PE=2 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 2.405e-27
Identity = 73/183 (39.89%), Postives = 104/183 (56.83%), Query Frame = 2
Query:  140 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQSMMFSA 688
            F D  L+ ELLR I   GFE PS +Q   I   + G DVI QA+SG GKTA F ++ LQQ + +  +  AL+L  TRELA QI         Y+  +      GG N++    +L++ C  +VVGTPGR+  +   K L  + ++ F+LDE D+ML S   +  +Q++FKM P D Q ++ SA
Sbjct:   32 FDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTATFSIAILQQIDTSIRECQALILAPTRELATQIQRVVMALGEYM-KVHSHACIGGTNVREDARILESGC-HVVVGTPGRVYDMINRKVLRTQYIKLFVLDEADEML-SRGFKDQIQDVFKMLPPDVQVILLSA 211          
BLAST of CX295588 vs. ExPASy Swiss-Prot
Match: IF4A_SCLS1 (ATP-dependent RNA helicase eIF4A OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=tif1 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.141e-27
Identity = 71/178 (39.89%), Postives = 104/178 (58.43%), Query Frame = 2
Query:  155 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQSMMFSA 688
            LKPELLR +   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQ+ +PN  Q  AL+L  TRELA QI         ++ +++     GG +++     L+ + PQ+VVGTPGR+  + + + L   +++ F+LDE D+ML S      + +IF++ P   Q ++ SA
Sbjct:   32 LKPELLRGVYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQKLDPNVKQCQALILAPTRELAQQIQKVVVAIGDFM-NVECHACIGGTSVRDDMKALQ-DGPQVVVGTPGRVHDMIQRRFLKTDSMKMFVLDEADEML-SRGFTEQIYDIFQLLPQSTQVVLLSA 206          
BLAST of CX295588 vs. ExPASy Swiss-Prot
Match: IF4A_BOTFB (ATP-dependent RNA helicase eIF4A OS=Botryotinia fuckeliana (strain B05.10) GN=tif1 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.141e-27
Identity = 71/178 (39.89%), Postives = 104/178 (58.43%), Query Frame = 2
Query:  155 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQSMMFSA 688
            LKPELLR +   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQ+ +PN  Q  AL+L  TRELA QI         ++ +++     GG +++     L+ + PQ+VVGTPGR+  + + + L   +++ F+LDE D+ML S      + +IF++ P   Q ++ SA
Sbjct:   32 LKPELLRGVYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQKLDPNVKQCQALILAPTRELAQQIQKVVVAIGDFM-NVECHACIGGTSVRDDMKALQ-DGPQVVVGTPGRVHDMIQRRFLKTDSMKMFVLDEADEML-SRGFTEQIYDIFQLLPQSTQVVLLSA 206          
BLAST of CX295588 vs. ExPASy Swiss-Prot
Match: DHH1_NEUCR (ATP-dependent RNA helicase dhh-1 OS=Neurospora crassa GN=dhh-1 PE=3 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 4.103e-27
Identity = 72/184 (39.13%), Postives = 107/184 (58.15%), Query Frame = 2
Query:  140 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP-QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQSMMFSA 688
            + DF+   +LL  I ++GFE PS +Q E IP A+ G D++ +AK+G GKTA FV+  L +  P   ++  L+L  TRELA Q     +    +L  I V V  GG  ++   D+++ + P  IVVGTPGRIL LA  +   L     FI+DE DK+L S +    ++++ +  P D+Q M+FSA
Sbjct:   47 WEDFIHDRDLLMGIFEAGFEKPSPIQEEAIPVALTGRDILARAKNGTGKTAAFVIPALNKINPKVSKIQCLILVPTRELAMQTSQVCKTLGKHL-GINVMVTTGGTGLR--DDIVRLQDPVHIVVGTPGRILDLAGKQVADLSECPMFIMDEADKLL-SQEFTPVIEQLLQFHPKDRQVMLFSA 226          
BLAST of CX295588 vs. ExPASy Swiss-Prot
Match: IF4A_ASPCL (ATP-dependent RNA helicase eIF4A OS=Aspergillus clavatus GN=tif1 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.998e-27
Identity = 74/186 (39.78%), Postives = 103/186 (55.38%), Query Frame = 2
Query:  131 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQSMMFSA 688
            +  F    LKPELLR I   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQ+ +PN     AL+L  TRELA QI         ++  ++     GG N++     L+ + PQ+VVGTPGR+  + + + L    ++ FILDE D+ML S      + +IF++ P   Q ++ SA
Sbjct:   24 TDSFDSMDLKPELLRGIYAYGFERPSAIQQRAIMPIIKGSDVIAQAQSGTGKTATFSISALQKIDPNLKACQALILAPTRELAQQIQKVVVAIGDFM-SLECHACIGGTNVREDMKALQ-DGPQVVVGTPGRVQDMIQRRVLRTDQMKLFILDEADEML-SRGFTEQIYDIFQLLPQSTQVVLLSA 206          
BLAST of CX295588 vs. ExPASy Swiss-Prot
Match: IF4A2_CHICK (Eukaryotic initiation factor 4A-II OS=Gallus gallus GN=EIF4A2 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.998e-27
Identity = 78/183 (42.62%), Postives = 100/183 (54.64%), Query Frame = 2
Query:  140 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQSMMFSA 688
            F D  LK  LLR I   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQQ E +  +  ALVL  TRELA QI         Y+     A   GG N++     L+ E P IVVGTPGR+  +   + LS K ++ F+LDE D+ML S   +  + EIF+    + Q ++ SA
Sbjct:   35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIDLKETQALVLAPTRELAQQIQKVILALGDYMGATCHACI-GGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEML-SRGFKDQIYEIFQKLSTNIQVVLLSA 215          
BLAST of CX295588 vs. ExPASy Swiss-Prot
Match: DHH1_PICGU (ATP-dependent RNA helicase DHH1 OS=Pichia guilliermondii GN=DHH1 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.998e-27
Identity = 70/184 (38.04%), Postives = 109/184 (59.24%), Query Frame = 2
Query:  140 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP-QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQSMMFSA 688
            F +F LK ELL  I ++GFE PS +Q E IP A+ G D++ +AK+G GKTA F++  LQQ +    ++  L+L  TRELA Q     +    +L  ++  V  GG  ++   D+++ + P  I+VGTPGR+L LA            F++DE DKML S + +  +++I +  P ++QS++FSA
Sbjct:   31 FEEFGLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIPALQQVKTKLNKIQVLILVPTRELALQTSQVVKTLGKHL-KLQCMVTTGGTLLR--DDVMRLDEPVHILVGTPGRVLDLAARSIADFSECPMFVMDEADKML-SREFKGIIEQILEFFPKNRQSLLFSA 210          
The following BLAST results are available for this feature:
BLAST of CX295588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RH12_ORYSJ8.266e-2838.04DEAD-box ATP-dependent RNA helicase 12 OS=Oryza sa... [more]
DEAD_KLEPN8.266e-2839.34Cold-shock DEAD box protein A OS=Klebsiella pneumo... [more]
RH6_ORYSJ1.080e-2738.59DEAD-box ATP-dependent RNA helicase 6 OS=Oryza sat... [more]
IF4A_DROME2.405e-2739.89Eukaryotic initiation factor 4A OS=Drosophila mela... [more]
IF4A_SCLS13.141e-2739.89ATP-dependent RNA helicase eIF4A OS=Sclerotinia sc... [more]
IF4A_BOTFB3.141e-2739.89ATP-dependent RNA helicase eIF4A OS=Botryotinia fu... [more]
DHH1_NEUCR4.103e-2739.13ATP-dependent RNA helicase dhh-1 OS=Neurospora cra... [more]
IF4A_ASPCL6.998e-2739.78ATP-dependent RNA helicase eIF4A OS=Aspergillus cl... [more]
IF4A2_CHICK6.998e-2742.62Eukaryotic initiation factor 4A-II OS=Gallus gallu... [more]
DHH1_PICGU6.998e-2738.04ATP-dependent RNA helicase DHH1 OS=Pichia guillier... [more]

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Properties
Property NameValue
Genbank descriptionC05073G09SK DroRLeaf1 Citrus clementina cDNA clone C05073G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295588 ID=CX295588; Name=CX295588; organism=Citrus clementina; type=EST; length=738bp
TGGGAGAGAAAGAGACAACGAGTACGAGGATGAGCTTCTCGACTACGAGG
AAGAAGATGCTCAAGCTCCCGATTCCGTCGCTACCAAAGCAAACGGCGAA
GCCGCCAAGAAGGGCTATGTTGGTATACACAGTTCAGGATTCAGAGACTT
TCTTTTGAAGCCGGAACTTCTTCGTGCAATTGTGGACTCAGGATTTGAGC
ATCCTTCAGAAGTGCAACATGAATGCATACCTCAAGCGATTCTGGGCATG
GATGTTATTTGCCAAGCTAAATCAGGGATGGGGAAGACTGCTGTGTTTGT
TCTGTCAACTCTTCAGCAAACAGAGCCAAATCCAGGCCAAGTTACTGCAC
TTGTTTTATGTCACACTAGAGAGTTAGCTTATCAGATCTGCCATGAGTTT
GAGAGGTTCAGTACTTACCTGCCTGATATCAAGGTTGCTGTCTTTTATGG
TGGAGTTAATATAAAAATTCACAAAGATTTGCTGAAAAACGAATGTCCCC
AAATTGTTGTTGGGACTCCTGGAAGGATACTAGCTCTTGCTAGAGATAAA
GACCTCTCTTTGAAGAATGTGAGGCATTTTATCCTTGATGAATGCGATAA
GATGCTGGAATCTCTTGACATGAGAAGAGATGTGCAAGAGATTTTCAAGA
TGACTCCTCATGACAAGCAAAGTATGATGTTTTCAGCACACTCAGCAAGG
AATCGCCCAGTCTGCAGAAATTATGCAGATCCATGGAA
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