CX295588
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX295588 vs. ExPASy Swiss-Prot
Match: RH12_ORYSJ (DEAD-box ATP-dependent RNA helicase 12 OS=Oryza sativa subsp. japonica GN=Os10g0503700 PE=2 SV=2) HSP 1 Score: 124.02 bits (310), Expect = 8.266e-28 Identity = 70/184 (38.04%), Postives = 109/184 (59.24%), Query Frame = 2 Query: 140 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP-QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQSMMFSA 688 F D+ LK ELL I + GFE PS +Q E IP A+ G D++ +AK+G GKTA F + L++ +P + ++L TRELA Q + YL +I+V V GG ++K D+++ P ++VGTPGRIL L R LK+ ++DE DK+L + + + ++++ P ++Q +MFSA Sbjct: 149 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDPEKNAIQVVILVPTRELALQTSQVCKELGKYL-NIQVMVSTGGTSLK--DDIMRLYQPVHLLVGTPGRILDLTRKGICVLKDCSMLVMDEADKLL-APEFQPSIEQLIHFLPANRQLLMFSA 328
BLAST of CX295588 vs. ExPASy Swiss-Prot
Match: DEAD_KLEPN (Cold-shock DEAD box protein A OS=Klebsiella pneumoniae GN=deaD PE=3 SV=3) HSP 1 Score: 124.02 bits (310), Expect = 8.266e-28 Identity = 72/183 (39.34%), Postives = 97/183 (53.01%), Query Frame = 2 Query: 140 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQSMMFSA 688 F D LK +L A+ D G+E PS +Q ECIP + G DV+ A++G GKTA F L L +P LVL TRELA Q+ FS ++ + V YGG + L+ + PQIVVGTPGR+L + L L + +LDE D+ML + DV+ I P Q+ +FSA Sbjct: 8 FADLGLKAPILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNNIDPELRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALR-QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLR-MGFIEDVETIMAQIPEGHQTALFSA 188
BLAST of CX295588 vs. ExPASy Swiss-Prot
Match: RH6_ORYSJ (DEAD-box ATP-dependent RNA helicase 6 OS=Oryza sativa subsp. japonica GN=Os04g0533000 PE=2 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 1.080e-27 Identity = 71/184 (38.59%), Postives = 109/184 (59.24%), Query Frame = 2 Query: 140 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP-QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQSMMFSA 688 F D+ LK ELL I + GFE PS +Q E IP A+ G D++ +AK+G GKTA F + L++ + + + ++L TRELA Q + +L I+V V GG ++K D+++ P ++VGTPGRIL L + LKN ++DE DK+L S + + +QE+ + P ++Q +MFSA Sbjct: 126 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDKNAIQVVILVPTRELALQTSQVCKELGKHL-KIQVMVTTGGTSLK--DDIVRLYQPVHLLVGTPGRILDLTKKGVCVLKNCSMLVMDEADKLL-SPEFQPSIQELIRYLPSNRQILMFSA 305
BLAST of CX295588 vs. ExPASy Swiss-Prot
Match: IF4A_DROME (Eukaryotic initiation factor 4A OS=Drosophila melanogaster GN=eIF-4a PE=2 SV=3) HSP 1 Score: 122.479 bits (306), Expect = 2.405e-27 Identity = 73/183 (39.89%), Postives = 104/183 (56.83%), Query Frame = 2 Query: 140 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQSMMFSA 688 F D L+ ELLR I GFE PS +Q I + G DVI QA+SG GKTA F ++ LQQ + + + AL+L TRELA QI Y+ + GG N++ +L++ C +VVGTPGR+ + K L + ++ F+LDE D+ML S + +Q++FKM P D Q ++ SA Sbjct: 32 FDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTATFSIAILQQIDTSIRECQALILAPTRELATQIQRVVMALGEYM-KVHSHACIGGTNVREDARILESGC-HVVVGTPGRVYDMINRKVLRTQYIKLFVLDEADEML-SRGFKDQIQDVFKMLPPDVQVILLSA 211
BLAST of CX295588 vs. ExPASy Swiss-Prot
Match: IF4A_SCLS1 (ATP-dependent RNA helicase eIF4A OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=tif1 PE=3 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 3.141e-27 Identity = 71/178 (39.89%), Postives = 104/178 (58.43%), Query Frame = 2 Query: 155 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQSMMFSA 688 LKPELLR + GFE PS +Q I I G DVI QA+SG GKTA F +S LQ+ +PN Q AL+L TRELA QI ++ +++ GG +++ L+ + PQ+VVGTPGR+ + + + L +++ F+LDE D+ML S + +IF++ P Q ++ SA Sbjct: 32 LKPELLRGVYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQKLDPNVKQCQALILAPTRELAQQIQKVVVAIGDFM-NVECHACIGGTSVRDDMKALQ-DGPQVVVGTPGRVHDMIQRRFLKTDSMKMFVLDEADEML-SRGFTEQIYDIFQLLPQSTQVVLLSA 206
BLAST of CX295588 vs. ExPASy Swiss-Prot
Match: IF4A_BOTFB (ATP-dependent RNA helicase eIF4A OS=Botryotinia fuckeliana (strain B05.10) GN=tif1 PE=3 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 3.141e-27 Identity = 71/178 (39.89%), Postives = 104/178 (58.43%), Query Frame = 2 Query: 155 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQSMMFSA 688 LKPELLR + GFE PS +Q I I G DVI QA+SG GKTA F +S LQ+ +PN Q AL+L TRELA QI ++ +++ GG +++ L+ + PQ+VVGTPGR+ + + + L +++ F+LDE D+ML S + +IF++ P Q ++ SA Sbjct: 32 LKPELLRGVYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQKLDPNVKQCQALILAPTRELAQQIQKVVVAIGDFM-NVECHACIGGTSVRDDMKALQ-DGPQVVVGTPGRVHDMIQRRFLKTDSMKMFVLDEADEML-SRGFTEQIYDIFQLLPQSTQVVLLSA 206
BLAST of CX295588 vs. ExPASy Swiss-Prot
Match: DHH1_NEUCR (ATP-dependent RNA helicase dhh-1 OS=Neurospora crassa GN=dhh-1 PE=3 SV=2) HSP 1 Score: 121.709 bits (304), Expect = 4.103e-27 Identity = 72/184 (39.13%), Postives = 107/184 (58.15%), Query Frame = 2 Query: 140 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP-QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQSMMFSA 688 + DF+ +LL I ++GFE PS +Q E IP A+ G D++ +AK+G GKTA FV+ L + P ++ L+L TRELA Q + +L I V V GG ++ D+++ + P IVVGTPGRIL LA + L FI+DE DK+L S + ++++ + P D+Q M+FSA Sbjct: 47 WEDFIHDRDLLMGIFEAGFEKPSPIQEEAIPVALTGRDILARAKNGTGKTAAFVIPALNKINPKVSKIQCLILVPTRELAMQTSQVCKTLGKHL-GINVMVTTGGTGLR--DDIVRLQDPVHIVVGTPGRILDLAGKQVADLSECPMFIMDEADKLL-SQEFTPVIEQLLQFHPKDRQVMLFSA 226
BLAST of CX295588 vs. ExPASy Swiss-Prot
Match: IF4A_ASPCL (ATP-dependent RNA helicase eIF4A OS=Aspergillus clavatus GN=tif1 PE=3 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 6.998e-27 Identity = 74/186 (39.78%), Postives = 103/186 (55.38%), Query Frame = 2 Query: 131 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQSMMFSA 688 + F LKPELLR I GFE PS +Q I I G DVI QA+SG GKTA F +S LQ+ +PN AL+L TRELA QI ++ ++ GG N++ L+ + PQ+VVGTPGR+ + + + L ++ FILDE D+ML S + +IF++ P Q ++ SA Sbjct: 24 TDSFDSMDLKPELLRGIYAYGFERPSAIQQRAIMPIIKGSDVIAQAQSGTGKTATFSISALQKIDPNLKACQALILAPTRELAQQIQKVVVAIGDFM-SLECHACIGGTNVREDMKALQ-DGPQVVVGTPGRVQDMIQRRVLRTDQMKLFILDEADEML-SRGFTEQIYDIFQLLPQSTQVVLLSA 206
BLAST of CX295588 vs. ExPASy Swiss-Prot
Match: IF4A2_CHICK (Eukaryotic initiation factor 4A-II OS=Gallus gallus GN=EIF4A2 PE=2 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 6.998e-27 Identity = 78/183 (42.62%), Postives = 100/183 (54.64%), Query Frame = 2 Query: 140 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQSMMFSA 688 F D LK LLR I GFE PS +Q I I G DVI QA+SG GKTA F +S LQQ E + + ALVL TRELA QI Y+ A GG N++ L+ E P IVVGTPGR+ + + LS K ++ F+LDE D+ML S + + EIF+ + Q ++ SA Sbjct: 35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIDLKETQALVLAPTRELAQQIQKVILALGDYMGATCHACI-GGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEML-SRGFKDQIYEIFQKLSTNIQVVLLSA 215
BLAST of CX295588 vs. ExPASy Swiss-Prot
Match: DHH1_PICGU (ATP-dependent RNA helicase DHH1 OS=Pichia guilliermondii GN=DHH1 PE=3 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 6.998e-27 Identity = 70/184 (38.04%), Postives = 109/184 (59.24%), Query Frame = 2 Query: 140 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP-QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQSMMFSA 688 F +F LK ELL I ++GFE PS +Q E IP A+ G D++ +AK+G GKTA F++ LQQ + ++ L+L TRELA Q + +L ++ V GG ++ D+++ + P I+VGTPGR+L LA F++DE DKML S + + +++I + P ++QS++FSA Sbjct: 31 FEEFGLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIPALQQVKTKLNKIQVLILVPTRELALQTSQVVKTLGKHL-KLQCMVTTGGTLLR--DDVMRLDEPVHILVGTPGRVLDLAARSIADFSECPMFVMDEADKML-SREFKGIIEQILEFFPKNRQSLLFSA 210 The following BLAST results are available for this feature:
BLAST of CX295588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX295588 ID=CX295588; Name=CX295588; organism=Citrus clementina; type=EST; length=738bpback to top |