CX295592

Overview
NameCX295592
Unique NameCX295592
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_DESHY (10 kDa chaperonin OS=Desulfitobacterium hafniense (strain Y51) GN=groS PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.014e-21
Identity = 47/92 (51.09%), Postives = 68/92 (73.91%), Query Frame = 3
Query:  264 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 539
            +IKPLGDRV++K   +EEKT  GI +P  A+ KPQ GEVVAVG GK     ++ + VK G +VIYSKYAGTE++++G  +LI++E D++ ++
Sbjct:    2 NIKPLGDRVVIKALPMEEKTKSGIIMPDTAKEKPQEGEVVAVGPGKMEKGERIVLDVKVGDRVIYSKYAGTEVKYDGQEYLILKETDILAVI 93          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_DESHD (10 kDa chaperonin OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=groS PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.014e-21
Identity = 47/92 (51.09%), Postives = 68/92 (73.91%), Query Frame = 3
Query:  264 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 539
            +IKPLGDRV++K   +EEKT  GI +P  A+ KPQ GEVVAVG GK     ++ + VK G +VIYSKYAGTE++++G  +LI++E D++ ++
Sbjct:    2 NIKPLGDRVVIKALPMEEKTKSGIIMPDTAKEKPQEGEVVAVGPGKMEKGERIVLDVKVGDRVIYSKYAGTEVKYDGQEYLILKETDILAVI 93          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_DESDG (10 kDa chaperonin OS=Desulfovibrio desulfuricans (strain G20) GN=groS PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.014e-21
Identity = 47/94 (50.00%), Postives = 70/94 (74.47%), Query Frame = 3
Query:  264 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            ++KPL DRVLVK    EEKT GG+++P  A+ KP  GEV+AVG GKT    K + ++VK G  V+++KYAGTE++ +G +HL++REDD++ I++
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVIAVGPGKTADDGKVIAMTVKTGDVVLFNKYAGTEVKLDGVDHLVMREDDILAIIQ 95          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_THETN (10 kDa chaperonin OS=Thermoanaerobacter tengcongensis GN=groS PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.549e-21
Identity = 47/92 (51.09%), Postives = 68/92 (73.91%), Query Frame = 3
Query:  267 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            +KPLGDRV+VK+   EE T GG+ LP  A+ KPQ GEVVAVG G+ +   +++  VK G +VI+SKYAGTE++ +G  +L++RE D++ I+E
Sbjct:    3 LKPLGDRVVVKVIQSEEVTKGGVILPGTAKEKPQQGEVVAVGPGQYIDGKRVEPEVKVGDRVIFSKYAGTEVKLDGEEYLLLRESDILAIIE 94          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_EXISA (10 kDa chaperonin OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=groS PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.459e-20
Identity = 49/92 (53.26%), Postives = 67/92 (72.83%), Query Frame = 3
Query:  267 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 539
            +KPLGDRV++++   EEKT GGI LP  A+ KPQ G+VVAVG G+   + K +D+ VK    VIYSKYAGTE++ +G  +LIVRE D++ I+
Sbjct:    2 LKPLGDRVIIEVVEKEEKTIGGIVLPDTAKEKPQQGKVVAVGTGRVTDEGKRIDLDVKENDLVIYSKYAGTEVKHDGKEYLIVRESDILAIV 93          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_LAWIP (10 kDa chaperonin OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=groS PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.489e-20
Identity = 47/93 (50.54%), Postives = 67/93 (72.04%), Query Frame = 3
Query:  264 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 539
            ++KPL DRVLVK    EEKT GG+++P  A+ KP  GEVVAVG GK     KL  ++VK G  V+++KYAGTE++ +G  HL++REDD++ ++
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVVAVGPGKHTDDGKLIPMAVKAGDTVLFNKYAGTEVKLDGVEHLVMREDDILAVI 94          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_LAWIN (10 kDa chaperonin OS=Lawsonia intracellularis GN=groS PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.489e-20
Identity = 47/93 (50.54%), Postives = 67/93 (72.04%), Query Frame = 3
Query:  264 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 539
            ++KPL DRVLVK    EEKT GG+++P  A+ KP  GEVVAVG GK     KL  ++VK G  V+++KYAGTE++ +G  HL++REDD++ ++
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVVAVGPGKHTDDGKLIPMAVKAGDTVLFNKYAGTEVKLDGVEHLVMREDDILAVI 94          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_SYNJB (10 kDa chaperonin OS=Synechococcus sp. GN=groS PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.250e-20
Identity = 49/95 (51.58%), Postives = 69/95 (72.63%), Query Frame = 3
Query:  261 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            +++KPLGDRVLVKI   +EKT GGIFLP  A+ KPQ GEVVAVG GK   + KL  + +K G +V+YSKYAGTE++     ++++ E D++ I++
Sbjct:    9 STLKPLGDRVLVKIAQQDEKTAGGIFLPDTAKEKPQVGEVVAVGPGKRNDEGKLIPMELKAGDKVLYSKYAGTEVKLGSDEYVLLAERDILAIVQ 103          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_SYNJA (10 kDa chaperonin OS=Synechococcus sp. (strain JA-3-3Ab) GN=groS PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.250e-20
Identity = 49/95 (51.58%), Postives = 69/95 (72.63%), Query Frame = 3
Query:  261 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            +++KPLGDRVLVKI   +EKT GGIFLP  A+ KPQ GEVVAVG GK   + KL  + +K G +V+YSKYAGTE++     ++++ E D++ I++
Sbjct:    9 STLKPLGDRVLVKIAQQDEKTAGGIFLPDTAKEKPQVGEVVAVGPGKRNDEGKLIPMELKAGDRVLYSKYAGTEVKLGSDEYVLLAERDILAIVQ 103          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_CHLL2 (10 kDa chaperonin OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=groS PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.235e-19
Identity = 47/94 (50.00%), Postives = 64/94 (68.09%), Query Frame = 3
Query:  264 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            ++KPL DRV+VK    EEKT GG+F+P   + KPQ GEVVAVG GK     + LD+ V  G +V+Y KY+GTE+   G ++LI+RE D+  IL+
Sbjct:    2 NLKPLADRVIVKPAPAEEKTKGGLFIPDTGKEKPQYGEVVAVGPGKVADNGQLLDMQVTVGKKVLYGKYSGTEVNVEGEDYLIMRESDIFAILD 95          
The following BLAST results are available for this feature:
BLAST of CX295592 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 489
Match NameE-valueIdentityDescription
CH10_DESHY5.014e-2151.0910 kDa chaperonin OS=Desulfitobacterium hafniense ... [more]
CH10_DESHD5.014e-2151.0910 kDa chaperonin OS=Desulfitobacterium hafniense ... [more]
CH10_DESDG5.014e-2150.0010 kDa chaperonin OS=Desulfovibrio desulfuricans (... [more]
CH10_THETN6.549e-2151.0910 kDa chaperonin OS=Thermoanaerobacter tengcongen... [more]
CH10_EXISA1.459e-2053.2610 kDa chaperonin OS=Exiguobacterium sp. (strain A... [more]
CH10_LAWIP2.489e-2050.5410 kDa chaperonin OS=Lawsonia intracellularis (str... [more]
CH10_LAWIN2.489e-2050.5410 kDa chaperonin OS=Lawsonia intracellularis GN=g... [more]
CH10_SYNJB3.250e-2051.5810 kDa chaperonin OS=Synechococcus sp. GN=groS PE=... [more]
CH10_SYNJA3.250e-2051.5810 kDa chaperonin OS=Synechococcus sp. (strain JA-... [more]
CH10_CHLL21.235e-1950.0010 kDa chaperonin OS=Chlorobium limicola (strain D... [more]

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Properties
Property NameValue
Genbank descriptionC05073H01SK DroRLeaf1 Citrus clementina cDNA clone C05073H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295592 ID=CX295592; Name=CX295592; organism=Citrus clementina; type=EST; length=685bp
GAGGAGAACCTTATCAACTACTCGCTCGCTTCTCGCTTATCATTTCCAAT
CAGAATCTCTCTCGCTCTCTCTGCATCTGCAAGCAGATGGCGACAGCTCA
GCTAACAGCGTCATCAATTAAGGTTCCAGCAAGGAGCTTGACTTCATTCG
ATGGTCTCAGACCGTCTTCCGTCAAGTTCGCTTCCGTCGGAGGTGCTGCC
AGCCAACGCTCTTTCCGTCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGC
TCCCAAGTACACTTCAATTAAACCTTTGGGTGATAGAGTGCTGGTGAAAA
TCAAGACTGTAGAGGAGAAAACTGATGGTGGTATTTTTCTGCCATCTGCA
GCTCAAACAAAGCCTCAAGCAGGTGAGGTGGTAGCTGTTGGCGAGGGGAA
GACAGTTGGGAAGGCTAAACTGGACATATCTGTGAAGCCTGGGACCCAGG
TCATCTATTCGAAGTATGCAGGGACTGAGTTGGAGTTCAACGGCGCAAAT
CATCTCATAGTGAGGGAGGATGACGTAGTTGGCATTCTTGAAACAGATGA
AATCAAGGATCTTAAGCCCCTTAATGACAGAGTTTTCATCAAGGTTGCTG
AGGCTGAGGAGACAACTGCTGGAGGTTTGTTGTTGACGGAGGCAAGCAAG
GAGAAAACTTCCATTGGAAACGTCATTGCTGTTGG
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