CX295592

Overview
NameCX295592
Unique NameCX295592
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_PARD8 (10 kDa chaperonin OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=groS PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.393e-17
Identity = 45/92 (48.91%), Postives = 62/92 (67.39%), Query Frame = 3
Query:  264 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 539
            +I+PL DRVL+K    EEKT GGI +P +A+ KP  GE+VAVG     G    ++ VK G  V+Y KYAGTE+E +G  +LI+R+ DV+ I+
Sbjct:    2 NIRPLADRVLIKPAAAEEKTLGGIIIPDSAKEKPLKGEIVAVGN----GTKDEEMVVKVGDNVLYGKYAGTEIELDGEKYLIMRQADVLAII 89          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_CLOBM (10 kDa chaperonin OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=groS PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.393e-17
Identity = 41/93 (44.09%), Postives = 63/93 (67.74%), Query Frame = 3
Query:  264 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            +I+PLGDRV++K    EE T  GI LP AA+ KPQ  EV+AVG G  V   ++ + +K G +V++SKYAG E++  G    I+++DD++ ++E
Sbjct:    2 NIRPLGDRVVIKRVEAEETTKSGIVLPGAAKEKPQVAEVIAVGPGGLVDGKEVKMELKVGDKVLFSKYAGNEVKIEGEEVTILKQDDILAVVE 94          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_CLOBL (10 kDa chaperonin OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=groS PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.393e-17
Identity = 41/93 (44.09%), Postives = 63/93 (67.74%), Query Frame = 3
Query:  264 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            +I+PLGDRV++K    EE T  GI LP AA+ KPQ  EV+AVG G  V   ++ + +K G +V++SKYAG E++  G    I+++DD++ ++E
Sbjct:    2 NIRPLGDRVVIKRVEAEETTKSGIVLPGAAKEKPQVAEVIAVGPGGLVDGKEVKMELKVGDKVLFSKYAGNEVKIEGEEVTILKQDDILAVVE 94          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_CLOBK (10 kDa chaperonin OS=Clostridium botulinum (strain Okra / Type B1) GN=groS PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.393e-17
Identity = 41/93 (44.09%), Postives = 63/93 (67.74%), Query Frame = 3
Query:  264 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            +I+PLGDRV++K    EE T  GI LP AA+ KPQ  EV+AVG G  V   ++ + +K G +V++SKYAG E++  G    I+++DD++ ++E
Sbjct:    2 NIRPLGDRVVIKRVEAEETTKSGIVLPGAAKEKPQVAEVIAVGPGGLVDGKEVKMELKVGDKVLFSKYAGNEVKIEGEEVTILKQDDILAVVE 94          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_CLOBJ (10 kDa chaperonin OS=Clostridium botulinum (strain Kyoto / Type A2) GN=groS PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.393e-17
Identity = 41/93 (44.09%), Postives = 63/93 (67.74%), Query Frame = 3
Query:  264 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            +I+PLGDRV++K    EE T  GI LP AA+ KPQ  EV+AVG G  V   ++ + +K G +V++SKYAG E++  G    I+++DD++ ++E
Sbjct:    2 NIRPLGDRVVIKRVEAEETTKSGIVLPGAAKEKPQVAEVIAVGPGGLVDGKEVKMELKVGDKVLFSKYAGNEVKIEGEEVTILKQDDILAVVE 94          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_CLOBH (10 kDa chaperonin OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=groS PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.393e-17
Identity = 41/93 (44.09%), Postives = 63/93 (67.74%), Query Frame = 3
Query:  264 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            +I+PLGDRV++K    EE T  GI LP AA+ KPQ  EV+AVG G  V   ++ + +K G +V++SKYAG E++  G    I+++DD++ ++E
Sbjct:    2 NIRPLGDRVVIKRVEAEETTKSGIVLPGAAKEKPQVAEVIAVGPGGLVDGKEVKMELKVGDKVLFSKYAGNEVKIEGEEVTILKQDDILAVVE 94          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_CLOB6 (10 kDa chaperonin OS=Clostridium botulinum (strain 657 / Type Ba4) GN=groS PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.393e-17
Identity = 41/93 (44.09%), Postives = 63/93 (67.74%), Query Frame = 3
Query:  264 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            +I+PLGDRV++K    EE T  GI LP AA+ KPQ  EV+AVG G  V   ++ + +K G +V++SKYAG E++  G    I+++DD++ ++E
Sbjct:    2 NIRPLGDRVVIKRVEAEETTKSGIVLPGAAKEKPQVAEVIAVGPGGLVDGKEVKMELKVGDKVLFSKYAGNEVKIEGEEVTILKQDDILAVVE 94          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_CLOB1 (10 kDa chaperonin OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=groS PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.393e-17
Identity = 41/93 (44.09%), Postives = 63/93 (67.74%), Query Frame = 3
Query:  264 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            +I+PLGDRV++K    EE T  GI LP AA+ KPQ  EV+AVG G  V   ++ + +K G +V++SKYAG E++  G    I+++DD++ ++E
Sbjct:    2 NIRPLGDRVVIKRVEAEETTKSGIVLPGAAKEKPQVAEVIAVGPGGLVDGKEVKMELKVGDKVLFSKYAGNEVKIEGEEVTILKQDDILAVVE 94          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_ACIF5 (10 kDa chaperonin OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=groS PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.393e-17
Identity = 41/93 (44.09%), Postives = 64/93 (68.82%), Query Frame = 3
Query:  267 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            ++PL DRV+++    E+KT GGI +P  A+ KP  GE+VA G GK +   K+  + VK G QV+++KYAGTE++  G   L++REDD++ ++E
Sbjct:    3 LRPLHDRVVIRRLEEEQKTAGGIIIPDTAKEKPVRGEIVAAGHGKILEDGKVRALDVKTGDQVLFAKYAGTEIKVEGEELLVMREDDIMAVIE 95          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_ACIF2 (10 kDa chaperonin OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=groS PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.393e-17
Identity = 41/93 (44.09%), Postives = 64/93 (68.82%), Query Frame = 3
Query:  267 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            ++PL DRV+++    E+KT GGI +P  A+ KP  GE+VA G GK +   K+  + VK G QV+++KYAGTE++  G   L++REDD++ ++E
Sbjct:    3 LRPLHDRVVIRRLEEEQKTAGGIIIPDTAKEKPVRGEIVAAGHGKILEDGKVRALDVKTGDQVLFAKYAGTEIKVEGEELLVMREDDIMAVIE 95          
The following BLAST results are available for this feature:
BLAST of CX295592 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 489
Match NameE-valueIdentityDescription
CH10_PARD84.393e-1748.9110 kDa chaperonin OS=Parabacteroides distasonis (s... [more]
CH10_CLOBM4.393e-1744.0910 kDa chaperonin OS=Clostridium botulinum (strain... [more]
CH10_CLOBL4.393e-1744.0910 kDa chaperonin OS=Clostridium botulinum (strain... [more]
CH10_CLOBK4.393e-1744.0910 kDa chaperonin OS=Clostridium botulinum (strain... [more]
CH10_CLOBJ4.393e-1744.0910 kDa chaperonin OS=Clostridium botulinum (strain... [more]
CH10_CLOBH4.393e-1744.0910 kDa chaperonin OS=Clostridium botulinum (strain... [more]
CH10_CLOB64.393e-1744.0910 kDa chaperonin OS=Clostridium botulinum (strain... [more]
CH10_CLOB14.393e-1744.0910 kDa chaperonin OS=Clostridium botulinum (strain... [more]
CH10_ACIF54.393e-1744.0910 kDa chaperonin OS=Acidithiobacillus ferrooxidan... [more]
CH10_ACIF24.393e-1744.0910 kDa chaperonin OS=Acidithiobacillus ferrooxidan... [more]

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Properties
Property NameValue
Genbank descriptionC05073H01SK DroRLeaf1 Citrus clementina cDNA clone C05073H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295592 ID=CX295592; Name=CX295592; organism=Citrus clementina; type=EST; length=685bp
GAGGAGAACCTTATCAACTACTCGCTCGCTTCTCGCTTATCATTTCCAAT
CAGAATCTCTCTCGCTCTCTCTGCATCTGCAAGCAGATGGCGACAGCTCA
GCTAACAGCGTCATCAATTAAGGTTCCAGCAAGGAGCTTGACTTCATTCG
ATGGTCTCAGACCGTCTTCCGTCAAGTTCGCTTCCGTCGGAGGTGCTGCC
AGCCAACGCTCTTTCCGTCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGC
TCCCAAGTACACTTCAATTAAACCTTTGGGTGATAGAGTGCTGGTGAAAA
TCAAGACTGTAGAGGAGAAAACTGATGGTGGTATTTTTCTGCCATCTGCA
GCTCAAACAAAGCCTCAAGCAGGTGAGGTGGTAGCTGTTGGCGAGGGGAA
GACAGTTGGGAAGGCTAAACTGGACATATCTGTGAAGCCTGGGACCCAGG
TCATCTATTCGAAGTATGCAGGGACTGAGTTGGAGTTCAACGGCGCAAAT
CATCTCATAGTGAGGGAGGATGACGTAGTTGGCATTCTTGAAACAGATGA
AATCAAGGATCTTAAGCCCCTTAATGACAGAGTTTTCATCAAGGTTGCTG
AGGCTGAGGAGACAACTGCTGGAGGTTTGTTGTTGACGGAGGCAAGCAAG
GAGAAAACTTCCATTGGAAACGTCATTGCTGTTGG
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