CX295592

Overview
NameCX295592
Unique NameCX295592
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_RHOCS (10 kDa chaperonin OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=groS PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.737e-17
Identity = 42/92 (45.65%), Postives = 64/92 (69.57%), Query Frame = 3
Query:  270 KPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            +PL DRV+VK    E+KT GGI +P  A+ KPQ GE++AVG G      KL  + VK G +V++ K++GTE++ +G  +LI++E D++G+LE
Sbjct:    4 RPLHDRVVVKRVESEQKTAGGIIIPDTAKEKPQEGEIIAVGSGARDESGKLIALDVKVGDRVLFGKWSGTEVKIDGVEYLIMKESDIMGVLE 95          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_GEOSM (10 kDa chaperonin OS=Geobacter sp. (strain M21) GN=groS PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.737e-17
Identity = 42/94 (44.68%), Postives = 65/94 (69.15%), Query Frame = 3
Query:  264 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            +++PL DR++VK       T GG+++P  A+ KPQ GEVVAVG GK     K+  I +K G +V++ KYAG+E++  G + LI+REDD++G++E
Sbjct:    2 NLRPLQDRIIVKRVEEATMTAGGLYIPETAKEKPQQGEVVAVGNGKRGDDGKVYPIDLKVGDKVLFGKYAGSEVKLEGEDFLIMREDDILGVVE 95          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH101_BRAJA (10 kDa chaperonin 1 OS=Bradyrhizobium japonicum GN=groS1 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.737e-17
Identity = 41/92 (44.57%), Postives = 66/92 (71.74%), Query Frame = 3
Query:  270 KPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            +PL DRVLV+    EEKT GGI +P  A+ KPQ GE++A G G    + +L  I VKPG +V++ K++GTE++ +G ++LI++E D++G+++
Sbjct:    4 RPLHDRVLVRRIDAEEKTAGGIIIPDTAKEKPQEGEIIAAGSGGRNEQGQLIPIDVKPGDRVLFGKWSGTEVKIDGQDYLIMKESDLLGVVD 95          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_GEOBB (10 kDa chaperonin OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=groS PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.493e-17
Identity = 42/94 (44.68%), Postives = 65/94 (69.15%), Query Frame = 3
Query:  264 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            +++PL DR++VK       T GG+++P  A+ KPQ GEVVAVG GK     K+  I +K G +V++ KYAG+E++  G + LI+REDD++G++E
Sbjct:    2 NLRPLQDRIIVKRVEEATMTAGGLYIPETAKEKPQQGEVVAVGNGKRGEDGKVYPIDLKVGDKVLFGKYAGSEVKLEGEDFLIMREDDILGVVE 95          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_DESAH (10 kDa chaperonin OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=groS PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.493e-17
Identity = 42/94 (44.68%), Postives = 65/94 (69.15%), Query Frame = 3
Query:  264 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            S++PL DR+LV+     EKT GGI +P  A+ KP  G+VVA G G+     KL  + +K G  +++SKY GTE++ +G ++LI+R+DDV+G++E
Sbjct:    2 SLRPLQDRILVERVQETEKTKGGIIIPDTAKEKPAEGKVVASGNGRVGEDGKLIPMDLKVGDTILFSKYGGTEVKIDGTDYLIMRQDDVLGVIE 95          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_CAUCR (10 kDa chaperonin OS=Caulobacter crescentus GN=groS PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.493e-17
Identity = 44/92 (47.83%), Postives = 64/92 (69.57%), Query Frame = 3
Query:  270 KPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            +PLGDRVLVK    E KT GGI +P  A+ KPQ GEVVAVG G    K   + + VK G ++++ K++GTE++ +G + LI++E DV+G++E
Sbjct:    4 RPLGDRVLVKRVEEETKTKGGIIIPDTAKEKPQEGEVVAVGPGARNDKGDVVALDVKAGDRILFGKWSGTEVKVDGQDLLIMKESDVLGVVE 95          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_CAUCN (10 kDa chaperonin OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=groS PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.493e-17
Identity = 44/92 (47.83%), Postives = 64/92 (69.57%), Query Frame = 3
Query:  270 KPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            +PLGDRVLVK    E KT GGI +P  A+ KPQ GEVVAVG G    K   + + VK G ++++ K++GTE++ +G + LI++E DV+G++E
Sbjct:    4 RPLGDRVLVKRVEEETKTKGGIIIPDTAKEKPQEGEVVAVGPGARNDKGDVVALDVKAGDRILFGKWSGTEVKVDGQDLLIMKESDVLGVVE 95          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_SYNP6 (10 kDa chaperonin OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=groS PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.786e-17
Identity = 42/94 (44.68%), Postives = 62/94 (65.96%), Query Frame = 3
Query:  261 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDI-SVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 539
            +++ PLGDRV VK+   EEKT GGI LP  A+ KPQ GE+VAVG GK           VK G +V+YSKYAGT+++    +++++ E D++ ++
Sbjct:    9 STVTPLGDRVFVKVAEAEEKTAGGIILPDNAKEKPQVGEIVAVGPGKRNDDGSRQAPEVKIGDKVLYSKYAGTDIKLGNDDYVLLSEKDILAVV 102          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_SYNE7 (10 kDa chaperonin OS=Synechococcus elongatus (strain PCC 7942) GN=groS PE=3 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 9.786e-17
Identity = 42/94 (44.68%), Postives = 62/94 (65.96%), Query Frame = 3
Query:  261 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDI-SVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 539
            +++ PLGDRV VK+   EEKT GGI LP  A+ KPQ GE+VAVG GK           VK G +V+YSKYAGT+++    +++++ E D++ ++
Sbjct:    9 STVTPLGDRVFVKVAEAEEKTAGGIILPDNAKEKPQVGEIVAVGPGKRNDDGSRQAPEVKIGDKVLYSKYAGTDIKLGNDDYVLLSEKDILAVV 102          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_PROMS (10 kDa chaperonin OS=Prochlorococcus marinus (strain AS9601) GN=groS PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.786e-17
Identity = 40/94 (42.55%), Postives = 63/94 (67.02%), Query Frame = 3
Query:  261 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK-TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 539
            +++KPLGDR+ +K+   EEKT GGI LP +A+ KPQ GEV  VG GK     ++    V  G +V+YSKYAGT+++  G  ++++ E D++ ++
Sbjct:    9 STVKPLGDRIFIKVSASEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNEDGSRQTPEVSIGDKVLYSKYAGTDIKLGGDEYVLLSEKDILAVV 102          
The following BLAST results are available for this feature:
BLAST of CX295592 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 489
Match NameE-valueIdentityDescription
CH10_RHOCS5.737e-1745.6510 kDa chaperonin OS=Rhodospirillum centenum (stra... [more]
CH10_GEOSM5.737e-1744.6810 kDa chaperonin OS=Geobacter sp. (strain M21) GN... [more]
CH101_BRAJA5.737e-1744.5710 kDa chaperonin 1 OS=Bradyrhizobium japonicum GN... [more]
CH10_GEOBB7.493e-1744.6810 kDa chaperonin OS=Geobacter bemidjiensis (strai... [more]
CH10_DESAH7.493e-1744.6810 kDa chaperonin OS=Desulfobacterium autotrophicu... [more]
CH10_CAUCR7.493e-1747.8310 kDa chaperonin OS=Caulobacter crescentus GN=gro... [more]
CH10_CAUCN7.493e-1747.8310 kDa chaperonin OS=Caulobacter crescentus (strai... [more]
CH10_SYNP69.786e-1744.6810 kDa chaperonin OS=Synechococcus sp. (strain ATC... [more]
CH10_SYNE79.786e-1744.6810 kDa chaperonin OS=Synechococcus elongatus (stra... [more]
CH10_PROMS9.786e-1742.5510 kDa chaperonin OS=Prochlorococcus marinus (stra... [more]

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Properties
Property NameValue
Genbank descriptionC05073H01SK DroRLeaf1 Citrus clementina cDNA clone C05073H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295592 ID=CX295592; Name=CX295592; organism=Citrus clementina; type=EST; length=685bp
GAGGAGAACCTTATCAACTACTCGCTCGCTTCTCGCTTATCATTTCCAAT
CAGAATCTCTCTCGCTCTCTCTGCATCTGCAAGCAGATGGCGACAGCTCA
GCTAACAGCGTCATCAATTAAGGTTCCAGCAAGGAGCTTGACTTCATTCG
ATGGTCTCAGACCGTCTTCCGTCAAGTTCGCTTCCGTCGGAGGTGCTGCC
AGCCAACGCTCTTTCCGTCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGC
TCCCAAGTACACTTCAATTAAACCTTTGGGTGATAGAGTGCTGGTGAAAA
TCAAGACTGTAGAGGAGAAAACTGATGGTGGTATTTTTCTGCCATCTGCA
GCTCAAACAAAGCCTCAAGCAGGTGAGGTGGTAGCTGTTGGCGAGGGGAA
GACAGTTGGGAAGGCTAAACTGGACATATCTGTGAAGCCTGGGACCCAGG
TCATCTATTCGAAGTATGCAGGGACTGAGTTGGAGTTCAACGGCGCAAAT
CATCTCATAGTGAGGGAGGATGACGTAGTTGGCATTCTTGAAACAGATGA
AATCAAGGATCTTAAGCCCCTTAATGACAGAGTTTTCATCAAGGTTGCTG
AGGCTGAGGAGACAACTGCTGGAGGTTTGTTGTTGACGGAGGCAAGCAAG
GAGAAAACTTCCATTGGAAACGTCATTGCTGTTGG
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