CX295592

Overview
NameCX295592
Unique NameCX295592
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11254 contig Ccv1_Contig11254:143..824. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_PELPB (10 kDa chaperonin OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=groS PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.613e-19
Identity = 46/93 (49.46%), Postives = 65/93 (69.89%), Query Frame = 3
Query:  264 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 539
            ++KPL DRV+VK    EEKT GG+++P   + KPQ GEVVAVG GK     + L++ VK G++V+Y KY+GTE+   G ++LI+RE D+  IL
Sbjct:    2 NLKPLSDRVIVKPAAAEEKTKGGLYIPDTGKEKPQYGEVVAVGAGKIADNGQLLEMQVKVGSKVLYGKYSGTEVSVEGEDYLIMRESDIFAIL 94          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_DESDA (10 kDa chaperonin OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=groS PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.613e-19
Identity = 44/93 (47.31%), Postives = 68/93 (73.12%), Query Frame = 3
Query:  267 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            +KPL DRVLVK    EEKT GG+++P  A+ KP  G+VVAVG GK      +  ++VK G +V+++KYAGTE++ +G +HL++RE+D++ I++
Sbjct:    3 LKPLNDRVLVKRLETEEKTAGGLYIPDTAKEKPSKGQVVAVGPGKVGDNGERTALAVKAGDEVLFNKYAGTEVKLDGVDHLVMREEDILAIID 95          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_CLOTH (10 kDa chaperonin OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=groS PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.613e-19
Identity = 46/93 (49.46%), Postives = 67/93 (72.04%), Query Frame = 3
Query:  264 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            +I+PLGDRV+VK+   EE T  GI LP +A+ KPQ  EVVAVG G  V   ++ + VK G +VI SKYAGTE++F+G  + I+R++D++ ++E
Sbjct:    2 NIRPLGDRVVVKMVETEETTKSGIVLPGSAKEKPQVAEVVAVGPGTVVDGKEVKMEVKVGDKVIISKYAGTEVKFDGQEYTILRQNDILAVVE 94          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_GEOSL (10 kDa chaperonin OS=Geobacter sulfurreducens GN=groS PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.107e-19
Identity = 45/94 (47.87%), Postives = 66/94 (70.21%), Query Frame = 3
Query:  264 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            +++PL DR+LVK    E KT GGIF+P  A+ KPQ GE+VAVG GK     K + + +K G +V++ KYAGT+++  G   LI+REDD++G++E
Sbjct:    2 NLRPLQDRILVKRIEEETKTAGGIFIPDTAKEKPQRGEIVAVGNGKKTEDGKVIPVDLKVGDKVLFGKYAGTDIKIEGQEFLIMREDDILGVIE 95          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_GEOSF (10 kDa chaperonin OS=Geobacter sp. (strain FRC-32) GN=groS PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.107e-19
Identity = 45/93 (48.39%), Postives = 67/93 (72.04%), Query Frame = 3
Query:  267 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            ++P+ DR++VK    E KT GGI++P  A+ KPQ GEVVAVG GK     K L + VK G +V++ KY+GTE++  G ++LI+REDD++G++E
Sbjct:    3 LRPMQDRIIVKRVEEETKTAGGIYIPETAKEKPQEGEVVAVGNGKRTEDGKILPLDVKVGDKVLFGKYSGTEVKVEGQDYLIMREDDILGVIE 95          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_SYNP2 (10 kDa chaperonin OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=groS PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.751e-19
Identity = 46/91 (50.55%), Postives = 68/91 (74.73%), Query Frame = 3
Query:  261 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK-TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVV 530
            +++KPLGDRV VK+   EEKT GGI LP +A+ KPQ GEVVAVGEGK     ++  + VK G +V+YSKYAGT+++ +G +++++ E D++
Sbjct:    9 STLKPLGDRVFVKVSESEEKTAGGILLPDSAKEKPQIGEVVAVGEGKRNDDGSRSAVDVKVGDKVLYSKYAGTDIKLSGDDYVLLSEKDIL 99          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_MYXXD (10 kDa chaperonin OS=Myxococcus xanthus (strain DK 1622) GN=groS PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.751e-19
Identity = 44/93 (47.31%), Postives = 66/93 (70.97%), Query Frame = 3
Query:  267 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            I+PL DR++VK    E KT GG+F+P  A+ KP  G+V+AVG GK     K+  + +K G  +++SKYAGTE++ +G  HLI+RE+DV+G++E
Sbjct:    3 IRPLQDRLIVKRVAEENKTKGGLFIPDTAKEKPLEGKVIAVGNGKVQEDGKVRPLDIKAGDTILFSKYAGTEIKLDGEEHLILREEDVLGVIE 95          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_CYAA5 (10 kDa chaperonin OS=Cyanothece sp. (strain ATCC 51142) GN=groS PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.751e-19
Identity = 45/91 (49.45%), Postives = 67/91 (73.63%), Query Frame = 3
Query:  261 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK-TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVV 530
            +++KPLGDR+ VK+   EEKT GGI LP  AQ KPQ GEVVAVG GK     ++ ++ VK G +V+YSKYAGT+++ +G +++++ E D++
Sbjct:    9 STVKPLGDRIFVKVSPAEEKTAGGILLPDNAQEKPQIGEVVAVGPGKRNDDGSRSELDVKVGDKVLYSKYAGTDVKLSGEDYVLLSEKDIL 99          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_CHLP8 (10 kDa chaperonin OS=Chlorobaculum parvum (strain NCIB 8327) GN=groS PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.751e-19
Identity = 46/93 (49.46%), Postives = 64/93 (68.82%), Query Frame = 3
Query:  264 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 539
            ++KPL DRV+VK    EEKT GG+++P   + KPQ GEVVAVGEGK     +L  + VK G +V+Y KY+GTE++    ++LI+RE D+  IL
Sbjct:    2 NLKPLADRVIVKPAPAEEKTKGGLYIPDTGKEKPQYGEVVAVGEGKVADNGQLVQMQVKVGDKVLYGKYSGTEVQVEAEDYLIMRESDIFAIL 94          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_OCEIH (10 kDa chaperonin OS=Oceanobacillus iheyensis GN=groS PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.593e-19
Identity = 43/91 (47.25%), Postives = 66/91 (72.53%), Query Frame = 3
Query:  267 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 539
            IKPLGDRV++++   EE T  GI LP +A+ KPQ G+VVAVG G+     K+ + V  G ++I+SK+AGTE+++ G  +LI+RE+D++ I+
Sbjct:    2 IKPLGDRVVIELVEQEETTASGIVLPDSAKEKPQEGKVVAVGSGRVENGEKIALEVSEGDRIIFSKFAGTEVKYEGTEYLILRENDILAII 92          
The following BLAST results are available for this feature:
BLAST of CX295592 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 489
Match NameE-valueIdentityDescription
CH10_PELPB1.613e-1949.4610 kDa chaperonin OS=Pelodictyon phaeoclathratifor... [more]
CH10_DESDA1.613e-1947.3110 kDa chaperonin OS=Desulfovibrio desulfuricans (... [more]
CH10_CLOTH1.613e-1949.4610 kDa chaperonin OS=Clostridium thermocellum (str... [more]
CH10_GEOSL2.107e-1947.8710 kDa chaperonin OS=Geobacter sulfurreducens GN=g... [more]
CH10_GEOSF2.107e-1948.3910 kDa chaperonin OS=Geobacter sp. (strain FRC-32)... [more]
CH10_SYNP22.751e-1950.5510 kDa chaperonin OS=Synechococcus sp. (strain ATC... [more]
CH10_MYXXD2.751e-1947.3110 kDa chaperonin OS=Myxococcus xanthus (strain DK... [more]
CH10_CYAA52.751e-1949.4510 kDa chaperonin OS=Cyanothece sp. (strain ATCC 5... [more]
CH10_CHLP82.751e-1949.4610 kDa chaperonin OS=Chlorobaculum parvum (strain ... [more]
CH10_OCEIH3.593e-1947.2510 kDa chaperonin OS=Oceanobacillus iheyensis GN=g... [more]

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Properties
Property NameValue
Genbank descriptionC05073H01SK DroRLeaf1 Citrus clementina cDNA clone C05073H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295592 ID=CX295592; Name=CX295592; organism=Citrus clementina; type=EST; length=685bp
GAGGAGAACCTTATCAACTACTCGCTCGCTTCTCGCTTATCATTTCCAAT
CAGAATCTCTCTCGCTCTCTCTGCATCTGCAAGCAGATGGCGACAGCTCA
GCTAACAGCGTCATCAATTAAGGTTCCAGCAAGGAGCTTGACTTCATTCG
ATGGTCTCAGACCGTCTTCCGTCAAGTTCGCTTCCGTCGGAGGTGCTGCC
AGCCAACGCTCTTTCCGTCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGC
TCCCAAGTACACTTCAATTAAACCTTTGGGTGATAGAGTGCTGGTGAAAA
TCAAGACTGTAGAGGAGAAAACTGATGGTGGTATTTTTCTGCCATCTGCA
GCTCAAACAAAGCCTCAAGCAGGTGAGGTGGTAGCTGTTGGCGAGGGGAA
GACAGTTGGGAAGGCTAAACTGGACATATCTGTGAAGCCTGGGACCCAGG
TCATCTATTCGAAGTATGCAGGGACTGAGTTGGAGTTCAACGGCGCAAAT
CATCTCATAGTGAGGGAGGATGACGTAGTTGGCATTCTTGAAACAGATGA
AATCAAGGATCTTAAGCCCCTTAATGACAGAGTTTTCATCAAGGTTGCTG
AGGCTGAGGAGACAACTGCTGGAGGTTTGTTGTTGACGGAGGCAAGCAAG
GAGAAAACTTCCATTGGAAACGTCATTGCTGTTGG
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