CX295592

Overview
NameCX295592
Unique NameCX295592
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11254 contig Ccv1_Contig11254:143..824. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_MICAN (10 kDa chaperonin OS=Microcystis aeruginosa (strain NIES-843) GN=groS PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.593e-19
Identity = 47/91 (51.65%), Postives = 64/91 (70.33%), Query Frame = 3
Query:  261 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK-TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVV 530
            T++KPLGDRV VK+   EEKT GGIFLP AA+ KPQ GEVVAVG GK     ++  + V  G +V+YSKYAGT+++  G   +++ E D++
Sbjct:    9 TTVKPLGDRVFVKVSPSEEKTAGGIFLPDAAKEKPQIGEVVAVGPGKRNDDGSRTPVEVGVGDKVLYSKYAGTDIKLGGEEFVLLSEKDIL 99          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_CLOPE (10 kDa chaperonin OS=Clostridium perfringens GN=groS PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.593e-19
Identity = 46/93 (49.46%), Postives = 64/93 (68.82%), Query Frame = 3
Query:  264 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            SIKPLGDRV++K    EE T  GI +   A+ +PQ  EVVAVG G  V   + ++ VK G +V+YSKYAGTE++F G  + I+R+DD++ I+E
Sbjct:    2 SIKPLGDRVVIKRLEAEETTKSGIIVTGTAKERPQEAEVVAVGPGAIVDGKRTEMEVKIGDKVLYSKYAGTEVKFEGEEYTILRQDDILAIVE 94          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_CLOP1 (10 kDa chaperonin OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=groS PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.593e-19
Identity = 46/93 (49.46%), Postives = 64/93 (68.82%), Query Frame = 3
Query:  264 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            SIKPLGDRV++K    EE T  GI +   A+ +PQ  EVVAVG G  V   + ++ VK G +V+YSKYAGTE++F G  + I+R+DD++ I+E
Sbjct:    2 SIKPLGDRVVIKRLEAEETTKSGIIVTGTAKERPQEAEVVAVGPGAIVDGKRTEMEVKIGDKVLYSKYAGTEVKFEGEEYTILRQDDILAIVE 94          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_CALS8 (10 kDa chaperonin OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=groS PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.593e-19
Identity = 45/92 (48.91%), Postives = 63/92 (68.48%), Query Frame = 3
Query:  267 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            I+P+GDR+L+K K  EE T  GI LP   + KPQ  EV+ VG G  V   K+++ VK G +VI SKYAGTE++ +G  + I+R+DDV+ I+E
Sbjct:    3 IRPIGDRILIKFKEREEVTKSGIVLPDTVKEKPQIAEVIEVGPGGIVDGEKVEMVVKKGDKVIVSKYAGTEIKIDGEEYTIIRQDDVLAIIE 94          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_ANATD (10 kDa chaperonin OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=groS PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.593e-19
Identity = 45/92 (48.91%), Postives = 63/92 (68.48%), Query Frame = 3
Query:  267 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            I+P+GDR+L+K K  EE T  GI LP   + KPQ  EV+ VG G  V   K+++ VK G +VI SKYAGTE++ +G  + I+R+DDV+ I+E
Sbjct:    3 IRPIGDRILIKFKEREEVTKSGIVLPDTVKEKPQIAEVIEVGPGGIVDGEKVEMVVKKGDKVIVSKYAGTEIKIDGEEYTIIRQDDVLAIIE 94          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_LACRJ (10 kDa chaperonin OS=Lactobacillus reuteri (strain JCM 1112) GN=groS PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.693e-19
Identity = 48/93 (51.61%), Postives = 66/93 (70.97%), Query Frame = 3
Query:  267 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            +KPLGDRV++K +T EEKT GGI L S  + KP  G+V+AVGEG+T+    KL  +VK G +V++ KYAG E+E+NG   L+V   D+V I+E
Sbjct:    2 LKPLGDRVVLKAETEEEKTVGGIVLASNVKEKPTTGKVIAVGEGRTLENGQKLAPAVKEGDRVLFDKYAGNEVEYNGEKFLVVHAKDLVAIVE 94          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_LACRD (10 kDa chaperonin OS=Lactobacillus reuteri (strain DSM 20016) GN=groS PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.693e-19
Identity = 48/93 (51.61%), Postives = 66/93 (70.97%), Query Frame = 3
Query:  267 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            +KPLGDRV++K +T EEKT GGI L S  + KP  G+V+AVGEG+T+    KL  +VK G +V++ KYAG E+E+NG   L+V   D+V I+E
Sbjct:    2 LKPLGDRVVLKAETEEEKTVGGIVLASNVKEKPTTGKVIAVGEGRTLENGQKLAPAVKEGDRVLFDKYAGNEVEYNGEKFLVVHAKDLVAIVE 94          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_CLOPS (10 kDa chaperonin OS=Clostridium perfringens (strain SM101 / Type A) GN=groS PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.693e-19
Identity = 45/93 (48.39%), Postives = 64/93 (68.82%), Query Frame = 3
Query:  264 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            SIKPLGDRV++K    EE T  GI +   A+ +PQ  EVVAVG G  +   + ++ VK G +V+YSKYAGTE++F G  + I+R+DD++ I+E
Sbjct:    2 SIKPLGDRVVIKRLEAEETTKSGIIVTGTAKERPQEAEVVAVGPGAIIDGKRTEMEVKIGDKVLYSKYAGTEVKFEGEEYTILRQDDILAIVE 94          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_CLOAB (10 kDa chaperonin OS=Clostridium acetobutylicum GN=groS PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.693e-19
Identity = 46/92 (50.00%), Postives = 65/92 (70.65%), Query Frame = 3
Query:  267 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            I+PLGDRV++K    EE T  GI LPS+A+ KPQ  EVVAVG G  V   ++ + VK G +V +SKY+GTE++ +    LI+R+DD++GI+E
Sbjct:    3 IRPLGDRVVIKRLEAEETTKSGIVLPSSAKEKPQMAEVVAVGPGGVVDGKEIQMQVKTGDKVFFSKYSGTEIKVDNEELLILRQDDILGIVE 94          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_CHLPD (10 kDa chaperonin OS=Chlorobium phaeobacteroides (strain DSM 266) GN=groS PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.693e-19
Identity = 45/94 (47.87%), Postives = 64/94 (68.09%), Query Frame = 3
Query:  264 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            ++KPL DRV+VK    EEKT GG+ +P   + KPQ GEVVAVG GK     + L++ +K G +V+Y KY+GTE+   G ++LI+RE D+  IL+
Sbjct:    2 NLKPLADRVIVKPAPAEEKTKGGLIIPDTGKEKPQYGEVVAVGTGKVADSGQLLEMQIKVGQKVLYGKYSGTEVSVEGEDYLIMRESDIFAILD 95          
The following BLAST results are available for this feature:
BLAST of CX295592 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 489
Match NameE-valueIdentityDescription
CH10_MICAN3.593e-1951.6510 kDa chaperonin OS=Microcystis aeruginosa (strai... [more]
CH10_CLOPE3.593e-1949.4610 kDa chaperonin OS=Clostridium perfringens GN=gr... [more]
CH10_CLOP13.593e-1949.4610 kDa chaperonin OS=Clostridium perfringens (stra... [more]
CH10_CALS83.593e-1948.9110 kDa chaperonin OS=Caldicellulosiruptor saccharo... [more]
CH10_ANATD3.593e-1948.9110 kDa chaperonin OS=Anaerocellum thermophilum (st... [more]
CH10_LACRJ4.693e-1951.6110 kDa chaperonin OS=Lactobacillus reuteri (strain... [more]
CH10_LACRD4.693e-1951.6110 kDa chaperonin OS=Lactobacillus reuteri (strain... [more]
CH10_CLOPS4.693e-1948.3910 kDa chaperonin OS=Clostridium perfringens (stra... [more]
CH10_CLOAB4.693e-1950.0010 kDa chaperonin OS=Clostridium acetobutylicum GN... [more]
CH10_CHLPD4.693e-1947.8710 kDa chaperonin OS=Chlorobium phaeobacteroides (... [more]

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Properties
Property NameValue
Genbank descriptionC05073H01SK DroRLeaf1 Citrus clementina cDNA clone C05073H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295592 ID=CX295592; Name=CX295592; organism=Citrus clementina; type=EST; length=685bp
GAGGAGAACCTTATCAACTACTCGCTCGCTTCTCGCTTATCATTTCCAAT
CAGAATCTCTCTCGCTCTCTCTGCATCTGCAAGCAGATGGCGACAGCTCA
GCTAACAGCGTCATCAATTAAGGTTCCAGCAAGGAGCTTGACTTCATTCG
ATGGTCTCAGACCGTCTTCCGTCAAGTTCGCTTCCGTCGGAGGTGCTGCC
AGCCAACGCTCTTTCCGTCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGC
TCCCAAGTACACTTCAATTAAACCTTTGGGTGATAGAGTGCTGGTGAAAA
TCAAGACTGTAGAGGAGAAAACTGATGGTGGTATTTTTCTGCCATCTGCA
GCTCAAACAAAGCCTCAAGCAGGTGAGGTGGTAGCTGTTGGCGAGGGGAA
GACAGTTGGGAAGGCTAAACTGGACATATCTGTGAAGCCTGGGACCCAGG
TCATCTATTCGAAGTATGCAGGGACTGAGTTGGAGTTCAACGGCGCAAAT
CATCTCATAGTGAGGGAGGATGACGTAGTTGGCATTCTTGAAACAGATGA
AATCAAGGATCTTAAGCCCCTTAATGACAGAGTTTTCATCAAGGTTGCTG
AGGCTGAGGAGACAACTGCTGGAGGTTTGTTGTTGACGGAGGCAAGCAAG
GAGAAAACTTCCATTGGAAACGTCATTGCTGTTGG
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