CX295592

Overview
NameCX295592
Unique NameCX295592
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_BORA1 (10 kDa chaperonin OS=Bordetella avium (strain 197N) GN=groS PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.013e-13
Identity = 37/94 (39.36%), Postives = 61/94 (64.89%), Query Frame = 3
Query:  264 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            +++PL DRV+VK    E KT  GI +P +A  KP  GEV+AVG GK     K L + +K G +V++ KYAG  ++ +G   L++RE++++ +++
Sbjct:    2 ALRPLHDRVIVKRLDNERKTASGIVIPDSAAEKPDQGEVLAVGPGKKTEDGKILPVDLKVGDKVLFGKYAGQGVKVDGEELLVIREEEILAVIQ 95          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_XYLFT (10 kDa chaperonin OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=groS PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.323e-13
Identity = 39/93 (41.94%), Postives = 59/93 (63.44%), Query Frame = 3
Query:  264 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDI-SVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 539
            SIKPL DR++VK    +E + GGI +P +A+ K   GEV+AVG GK +    +    VK G +VIY +YAG+  +  G  + ++REDD++ I+
Sbjct:    2 SIKPLHDRIVVKPIEADEVSPGGIVIPDSAKEKSTKGEVIAVGAGKPLDNGNVRTPCVKVGEKVIYGQYAGSTYKAEGVEYKVLREDDILAII 94          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_XYLFA (10 kDa chaperonin OS=Xylella fastidiosa GN=groS PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.323e-13
Identity = 39/93 (41.94%), Postives = 59/93 (63.44%), Query Frame = 3
Query:  264 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDI-SVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 539
            SIKPL DR++VK    +E + GGI +P +A+ K   GEV+AVG GK +    +    VK G +VIY +YAG+  +  G  + ++REDD++ I+
Sbjct:    2 SIKPLHDRIVVKPIEADEVSPGGIVIPDSAKEKSTKGEVIAVGAGKPLDNGNVRTPCVKVGEKVIYGQYAGSTYKAEGVEYKVLREDDILAII 94          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_XYLF2 (10 kDa chaperonin OS=Xylella fastidiosa (strain M23) GN=groS PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.323e-13
Identity = 39/93 (41.94%), Postives = 59/93 (63.44%), Query Frame = 3
Query:  264 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDI-SVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 539
            SIKPL DR++VK    +E + GGI +P +A+ K   GEV+AVG GK +    +    VK G +VIY +YAG+  +  G  + ++REDD++ I+
Sbjct:    2 SIKPLHDRIVVKPIEADEVSPGGIVIPDSAKEKSTKGEVIAVGAGKPLDNGNVRTPCVKVGEKVIYGQYAGSTYKAEGVEYKVLREDDILAII 94          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_THENE (10 kDa chaperonin OS=Thermotoga neapolitana GN=groS PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.323e-13
Identity = 41/90 (45.56%), Postives = 62/90 (68.89%), Query Frame = 3
Query:  273 PLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            PLG+R+L+K    E+KT+GGI LP +A+ KP   EVVAV  GK   + K DI V  G +VI+SKYAGTE++ +  +++I+  +D++  +E
Sbjct:    6 PLGERLLIKPIKEEKKTEGGIVLPDSAKEKPMKAEVVAV--GKIEDEEKFDIKV--GDKVIFSKYAGTEIKIDDEDYIIIDVNDILAKIE 91          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_RALSO (10 kDa chaperonin OS=Ralstonia solanacearum GN=groS PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.323e-13
Identity = 38/93 (40.86%), Postives = 60/93 (64.52%), Query Frame = 3
Query:  264 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 539
            +++PL DRV+VK    E KT  GI +P AA  KP  GEV+A+G GK   K   + + VK G +V++ KYAG  ++ +G   L++RE+D++ ++
Sbjct:    2 NLRPLHDRVIVKRLDNETKTASGIVIPDAAAEKPDQGEVLAIGPGKKDDKGNPIALDVKVGDRVLFGKYAGQAVKVDGQELLVMREEDIMAVV 94          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_MICLC (10 kDa chaperonin OS=Micrococcus luteus (strain ATCC 4698 / IFO 3333 / NCTC 2665) GN=groS PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.323e-13
Identity = 37/93 (39.78%), Postives = 58/93 (62.37%), Query Frame = 3
Query:  264 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 539
            SIKPL DR++V+    E+ T  G+ +P  A+ KPQ G+VVAVG G+      ++ + V  G  V+YSKY GTE++  G  +L++   DV+ ++
Sbjct:    4 SIKPLEDRIVVRPLEAEQTTASGLVIPDTAKEKPQEGQVVAVGPGRVAENGNRVPVDVAEGDVVLYSKYGGTEVKVGGEEYLVLSARDVLAVV 96          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_CORGL (10 kDa chaperonin OS=Corynebacterium glutamicum GN=groS PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.323e-13
Identity = 36/94 (38.30%), Postives = 60/94 (63.83%), Query Frame = 3
Query:  264 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            +IKPL D++LV+I   E  T  G+ +P +A+ KPQ   V+AVG G+   K  ++ + +K    VI+S+Y GTE++F G  +L++   D++ I+E
Sbjct:    5 NIKPLEDKILVQINEAETTTASGLVIPDSAKEKPQEATVIAVGPGRFDDKGNRIPLDIKEDDVVIFSRYGGTEIKFGGVEYLLLSARDILAIVE 98          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_CORGB (10 kDa chaperonin OS=Corynebacterium glutamicum (strain R) GN=groS PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.323e-13
Identity = 36/94 (38.30%), Postives = 60/94 (63.83%), Query Frame = 3
Query:  264 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            +IKPL D++LV+I   E  T  G+ +P +A+ KPQ   V+AVG G+   K  ++ + +K    VI+S+Y GTE++F G  +L++   D++ I+E
Sbjct:    5 NIKPLEDKILVQINEAETTTASGLVIPDSAKEKPQEATVIAVGPGRFDDKGNRIPLDIKEDDVVIFSRYGGTEIKFGGVEYLLLSARDILAIVE 98          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_COREF (10 kDa chaperonin OS=Corynebacterium efficiens GN=groS PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.323e-13
Identity = 36/94 (38.30%), Postives = 61/94 (64.89%), Query Frame = 3
Query:  264 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            +IKPL D++LV+I   E  T  G+ +P +A+ KPQ   V+AVG G+   K  ++ + +K    VI+S+Y GTE++F+G  +L++   D++ I+E
Sbjct:    5 NIKPLEDKILVQINEAETTTASGLVIPDSAKEKPQEATVIAVGPGRFDEKGERIPLDIKEDDVVIFSRYGGTEIKFDGVEYLLLSARDILAIVE 98          
The following BLAST results are available for this feature:
BLAST of CX295592 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 489
Match NameE-valueIdentityDescription
CH10_BORA11.013e-1339.3610 kDa chaperonin OS=Bordetella avium (strain 197N... [more]
CH10_XYLFT1.323e-1341.9410 kDa chaperonin OS=Xylella fastidiosa (strain Te... [more]
CH10_XYLFA1.323e-1341.9410 kDa chaperonin OS=Xylella fastidiosa GN=groS PE... [more]
CH10_XYLF21.323e-1341.9410 kDa chaperonin OS=Xylella fastidiosa (strain M2... [more]
CH10_THENE1.323e-1345.5610 kDa chaperonin OS=Thermotoga neapolitana GN=gro... [more]
CH10_RALSO1.323e-1340.8610 kDa chaperonin OS=Ralstonia solanacearum GN=gro... [more]
CH10_MICLC1.323e-1339.7810 kDa chaperonin OS=Micrococcus luteus (strain AT... [more]
CH10_CORGL1.323e-1338.3010 kDa chaperonin OS=Corynebacterium glutamicum GN... [more]
CH10_CORGB1.323e-1338.3010 kDa chaperonin OS=Corynebacterium glutamicum (s... [more]
CH10_COREF1.323e-1338.3010 kDa chaperonin OS=Corynebacterium efficiens GN=... [more]

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Properties
Property NameValue
Genbank descriptionC05073H01SK DroRLeaf1 Citrus clementina cDNA clone C05073H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295592 ID=CX295592; Name=CX295592; organism=Citrus clementina; type=EST; length=685bp
GAGGAGAACCTTATCAACTACTCGCTCGCTTCTCGCTTATCATTTCCAAT
CAGAATCTCTCTCGCTCTCTCTGCATCTGCAAGCAGATGGCGACAGCTCA
GCTAACAGCGTCATCAATTAAGGTTCCAGCAAGGAGCTTGACTTCATTCG
ATGGTCTCAGACCGTCTTCCGTCAAGTTCGCTTCCGTCGGAGGTGCTGCC
AGCCAACGCTCTTTCCGTCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGC
TCCCAAGTACACTTCAATTAAACCTTTGGGTGATAGAGTGCTGGTGAAAA
TCAAGACTGTAGAGGAGAAAACTGATGGTGGTATTTTTCTGCCATCTGCA
GCTCAAACAAAGCCTCAAGCAGGTGAGGTGGTAGCTGTTGGCGAGGGGAA
GACAGTTGGGAAGGCTAAACTGGACATATCTGTGAAGCCTGGGACCCAGG
TCATCTATTCGAAGTATGCAGGGACTGAGTTGGAGTTCAACGGCGCAAAT
CATCTCATAGTGAGGGAGGATGACGTAGTTGGCATTCTTGAAACAGATGA
AATCAAGGATCTTAAGCCCCTTAATGACAGAGTTTTCATCAAGGTTGCTG
AGGCTGAGGAGACAACTGCTGGAGGTTTGTTGTTGACGGAGGCAAGCAAG
GAGAAAACTTCCATTGGAAACGTCATTGCTGTTGG
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