CX295592

Overview
NameCX295592
Unique NameCX295592
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_BACHD (10 kDa chaperonin OS=Bacillus halodurans GN=groS PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 4.693e-19
Identity = 47/92 (51.09%), Postives = 65/92 (70.65%), Query Frame = 3
Query:  267 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK-TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 539
            +KPLGDRV+++    EEKT  GI LP  A+ KPQ G VVAVG G+ T    K+ + VK G  VI+SKYAGTE++++G  +LI+RE D++ I+
Sbjct:    2 LKPLGDRVVIEQVETEEKTASGIVLPDTAKEKPQEGRVVAVGTGRVTENGEKIALEVKEGDSVIFSKYAGTEVKYDGKEYLILRESDILAII 93          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_GEOUR (10 kDa chaperonin OS=Geobacter uraniireducens (strain Rf4) GN=groS PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.130e-19
Identity = 45/93 (48.39%), Postives = 65/93 (69.89%), Query Frame = 3
Query:  267 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            ++P+ DR++VK    E KT GGIF+P  A+ KP  GEVVAVG GK     K L + VK G +V++ KY+GTE++  G + LI+REDD++G++E
Sbjct:    3 LRPMQDRIIVKRVEEETKTAGGIFIPETAKEKPMEGEVVAVGNGKRTEDGKVLPLDVKVGDKVLFGKYSGTEIKVEGQDFLIMREDDILGVIE 95          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_GEOMG (10 kDa chaperonin OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=groS PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.130e-19
Identity = 45/93 (48.39%), Postives = 66/93 (70.97%), Query Frame = 3
Query:  267 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            ++PL DR+LVK    E+ T GGIF+P  A+ KPQ GE+VAVG GK     K + I +K G +V++ KYAGT+++  G + LI+REDD++G++E
Sbjct:    3 LRPLQDRILVKRIEEEQVTAGGIFIPDTAKEKPQRGEIVAVGNGKKTEDGKVIPIDLKVGDKVLFGKYAGTDIKVEGEDFLIMREDDILGVIE 95          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_CYAP7 (10 kDa chaperonin OS=Cyanothece sp. (strain PCC 7424) GN=groS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.005e-19
Identity = 46/91 (50.55%), Postives = 65/91 (71.43%), Query Frame = 3
Query:  261 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK-TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVV 530
            +++KPLGDRV VK+   EEKT GGI LP  A+ KPQ GEVVAVG GK     ++  I VK G +V+YSKYAGT+++  G +++++ E D++
Sbjct:    9 STVKPLGDRVFVKVSPSEEKTAGGILLPDTAKEKPQLGEVVAVGPGKRNDDGSRSPIEVKVGDKVLYSKYAGTDIKLGGEDYVLLSEKDIL 99          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_CLOBB (10 kDa chaperonin OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=groS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.005e-19
Identity = 44/92 (47.83%), Postives = 66/92 (71.74%), Query Frame = 3
Query:  267 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            IKPLG+RV++K    EEKT  GI L  +A+  PQ  EVVAVG G  V   K+++ VK G +V+YSKY+GTE++ +G  ++I+++DD++ I+E
Sbjct:    3 IKPLGNRVVIKKLEAEEKTKSGIVLTGSAKEVPQEAEVVAVGPGSIVDGTKIEMEVKVGDKVLYSKYSGTEVKLDGEEYMILKQDDILAIVE 94          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_CLOBA (10 kDa chaperonin OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=groS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.005e-19
Identity = 44/92 (47.83%), Postives = 66/92 (71.74%), Query Frame = 3
Query:  267 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            IKPLG+RV++K    EEKT  GI L  +A+  PQ  EVVAVG G  V   K+++ VK G +V+YSKY+GTE++ +G  ++I+++DD++ I+E
Sbjct:    3 IKPLGNRVVIKRLEAEEKTKSGIVLTGSAKEVPQEAEVVAVGPGSIVDGTKIEMEVKVGDKVLYSKYSGTEVKLDGEEYMILKQDDILAIVE 94          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_CHLPB (10 kDa chaperonin OS=Chlorobium phaeobacteroides (strain BS1) GN=groS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.005e-19
Identity = 45/94 (47.87%), Postives = 64/94 (68.09%), Query Frame = 3
Query:  264 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            ++KPL DRV+VK    EEKT GG+++P   + KPQ GEVVAVG GK     + L++ V  G +V+Y KY+GTE+   G ++LI+RE D+  IL+
Sbjct:    2 NLKPLADRVIVKPAPAEEKTKGGLYIPDTGKEKPQYGEVVAVGAGKVADSGQLLEMQVAVGNKVLYGKYSGTEVAVEGEDYLIMRESDIFAILD 95          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_BACTR (10 kDa chaperonin OS=Bacillus thermoglucosidasius GN=groS PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.046e-18
Identity = 44/92 (47.83%), Postives = 68/92 (73.91%), Query Frame = 3
Query:  267 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 539
            IKPLGDRV+++I   EEKT  GI LP  A+ KPQ G+VVAVG+G+ +    ++   V+ G ++I+SKYAGTE++++G  +LI+RE D++ ++
Sbjct:    2 IKPLGDRVVIEIVETEEKTASGIVLPDTAKEKPQEGKVVAVGKGRVLDNGQRVAPEVEVGDRIIFSKYAGTEVKYDGKEYLILRESDILAVI 93          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_BACSK (10 kDa chaperonin OS=Bacillus clausii (strain KSM-K16) GN=groS PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.046e-18
Identity = 46/92 (50.00%), Postives = 66/92 (71.74%), Query Frame = 3
Query:  267 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK-TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 539
            +KPLGDR++++    EEKT  GI LP +A+ KPQ G+VVAVG G+ T    K+ + VK G  +I+SKYAGTE+++ G  +LI+RE DV+ I+
Sbjct:    2 LKPLGDRIIIEQIQSEEKTASGIVLPDSAKEKPQEGKVVAVGTGRVTDNGEKVALEVKEGDSIIFSKYAGTEVKYEGTEYLILRESDVLAII 93          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_BACLD (10 kDa chaperonin OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=groS PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.046e-18
Identity = 42/92 (45.65%), Postives = 68/92 (73.91%), Query Frame = 3
Query:  267 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 539
            +KPLGDRV++++   EEKT  GI LP +A+ KPQ G+VVA G G+ +    ++ + VK G ++I+SKYAGTE+++ G ++LI+RE D++ ++
Sbjct:    2 LKPLGDRVVIELVESEEKTASGIVLPDSAKEKPQEGKVVAAGSGRVLESGERVALEVKTGDRIIFSKYAGTEVKYEGTDYLILRESDILAVI 93          
The following BLAST results are available for this feature:
BLAST of CX295592 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 489
Match NameE-valueIdentityDescription
CH10_BACHD4.693e-1951.0910 kDa chaperonin OS=Bacillus halodurans GN=groS P... [more]
CH10_GEOUR6.130e-1948.3910 kDa chaperonin OS=Geobacter uraniireducens (str... [more]
CH10_GEOMG6.130e-1948.3910 kDa chaperonin OS=Geobacter metallireducens (st... [more]
CH10_CYAP78.005e-1950.5510 kDa chaperonin OS=Cyanothece sp. (strain PCC 74... [more]
CH10_CLOBB8.005e-1947.8310 kDa chaperonin OS=Clostridium botulinum (strain... [more]
CH10_CLOBA8.005e-1947.8310 kDa chaperonin OS=Clostridium botulinum (strain... [more]
CH10_CHLPB8.005e-1947.8710 kDa chaperonin OS=Chlorobium phaeobacteroides (... [more]
CH10_BACTR1.046e-1847.8310 kDa chaperonin OS=Bacillus thermoglucosidasius ... [more]
CH10_BACSK1.046e-1850.0010 kDa chaperonin OS=Bacillus clausii (strain KSM-... [more]
CH10_BACLD1.046e-1845.6510 kDa chaperonin OS=Bacillus licheniformis (strai... [more]

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Properties
Property NameValue
Genbank descriptionC05073H01SK DroRLeaf1 Citrus clementina cDNA clone C05073H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295592 ID=CX295592; Name=CX295592; organism=Citrus clementina; type=EST; length=685bp
GAGGAGAACCTTATCAACTACTCGCTCGCTTCTCGCTTATCATTTCCAAT
CAGAATCTCTCTCGCTCTCTCTGCATCTGCAAGCAGATGGCGACAGCTCA
GCTAACAGCGTCATCAATTAAGGTTCCAGCAAGGAGCTTGACTTCATTCG
ATGGTCTCAGACCGTCTTCCGTCAAGTTCGCTTCCGTCGGAGGTGCTGCC
AGCCAACGCTCTTTCCGTCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGC
TCCCAAGTACACTTCAATTAAACCTTTGGGTGATAGAGTGCTGGTGAAAA
TCAAGACTGTAGAGGAGAAAACTGATGGTGGTATTTTTCTGCCATCTGCA
GCTCAAACAAAGCCTCAAGCAGGTGAGGTGGTAGCTGTTGGCGAGGGGAA
GACAGTTGGGAAGGCTAAACTGGACATATCTGTGAAGCCTGGGACCCAGG
TCATCTATTCGAAGTATGCAGGGACTGAGTTGGAGTTCAACGGCGCAAAT
CATCTCATAGTGAGGGAGGATGACGTAGTTGGCATTCTTGAAACAGATGA
AATCAAGGATCTTAAGCCCCTTAATGACAGAGTTTTCATCAAGGTTGCTG
AGGCTGAGGAGACAACTGCTGGAGGTTTGTTGTTGACGGAGGCAAGCAAG
GAGAAAACTTCCATTGGAAACGTCATTGCTGTTGG
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