CX295592

Overview
NameCX295592
Unique NameCX295592
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_WOLPM (10 kDa chaperonin OS=Wolbachia pipientis wMel GN=groS PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.256e-13
Identity = 37/94 (39.36%), Postives = 62/94 (65.96%), Query Frame = 3
Query:  264 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEG-KTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            S+  L D VL  IK + E+  GGI LPS+A+ KP  GEV+A+GEG +     ++ ++VK G +V Y ++AGTE+E N    ++++E D++ +++
Sbjct:    5 SLNVLDDSVL--IKPISEEKQGGIVLPSSAEKKPTKGEVIAIGEGSRNSSGERVTLTVKAGDKVFYRQWAGTEIEHNNEKLIVMKESDILAVIK 96          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_KOSOT (10 kDa chaperonin OS=Kosmotoga olearia (strain TBF 19.5.1) GN=groS PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.256e-13
Identity = 36/90 (40.00%), Postives = 60/90 (66.67%), Query Frame = 3
Query:  273 PLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            PLG+R+L+K    E++T+GGI LP  A+ KP   EV+ +G      K   DI +K G +VI+SKYAGTE++ +  +++++ +DD++  +E
Sbjct:    5 PLGERLLIKPIKEEKRTEGGIVLPDTAKEKPMKAEVIEIG------KDVEDIDIKVGDKVIFSKYAGTEIKIDDEDYILIDQDDILAKVE 88          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_AMOPS (10 kDa chaperonin OS=Amoeba proteus symbiotic bacterium GN=groS PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.256e-13
Identity = 37/93 (39.78%), Postives = 59/93 (63.44%), Query Frame = 3
Query:  267 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            I+PL DRV+V+    E  T G I +P +A  KP  GE++A+G GK +    +    VK G  V++ KY+GTE++  G   +++REDD++G++E
Sbjct:    3 IRPLHDRVVVRRLEEERTTAGWIVIPDSATEKPMRGEIIAIGAGKILDNGDVRAFVVKVGDVVLFGKYSGTEVKVAGQELVVMREDDIMGVIE 95          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_ACIAC (10 kDa chaperonin OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=groS PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.256e-13
Identity = 40/94 (42.55%), Postives = 59/94 (62.77%), Query Frame = 3
Query:  264 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDI-SVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            S++PL DRV+VK    E  T  GI +P  A  KP  G V+AVG GK   K +L + SVK G +V++ KY+G  ++ NG   L+++EDD+  ++E
Sbjct:    2 SLRPLHDRVIVKRIESETTTASGIVIPDNAAEKPDQGVVLAVGPGKKNDKGELSVLSVKVGDRVLFGKYSGQTVKVNGDELLVMKEDDLFAVVE 95          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH101_RHILO (10 kDa chaperonin 1 OS=Rhizobium loti GN=groS1 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.256e-13
Identity = 35/92 (38.04%), Postives = 63/92 (68.48%), Query Frame = 3
Query:  270 KPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEG-KTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            +PL DRV+++    + K+ GGI +P  A+ KPQ GEV+AVG G +    A + + VK G  +++ K++GTE++ +G + LI++E D++G+++
Sbjct:    4 RPLHDRVVIRRAEGDTKSKGGIIIPDNAKEKPQEGEVIAVGPGARDENGALVPLDVKAGDLILFGKWSGTEVKIDGEDLLIMKEADIMGVID 95          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_WOLWR (10 kDa chaperonin OS=Wolbachia sp. subsp. Drosophila simulans (strain wRi) GN=groS PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.947e-13
Identity = 37/94 (39.36%), Postives = 62/94 (65.96%), Query Frame = 3
Query:  264 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEG-KTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            S+  L D VL  IK + E+  GGI LPS+A+ KP  GEV+A+GEG +     ++ ++VK G +V Y ++AGTE+E N    ++++E D++ +++
Sbjct:    5 SLNVLDDSVL--IKPISEEKQGGIVLPSSAEKKPTKGEVIAIGEGSRNSSGERVTLTVKAGDKVFYRQWAGTEIEHNDEKLIVMKESDILAVIK 96          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_THEYD (10 kDa chaperonin OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=groS PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.848e-13
Identity = 39/93 (41.94%), Postives = 60/93 (64.52%), Query Frame = 3
Query:  267 IKPLGDRVLVKIKTVE-EKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            IKPL DRV+VK  + E EKT GGI++P  A+ KPQ G VV +G             VK G  V++ KYAG++++ +   +LI++E++++GI+E
Sbjct:    3 IKPLKDRVVVKFSSEELEKTPGGIYVPDVAKEKPQKGTVVEIGSEVK--------EVKVGDTVLFDKYAGSKIKVDDVEYLIIKEEEILGIVE 87          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_RENSM (10 kDa chaperonin OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589) GN=groS PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.848e-13
Identity = 39/93 (41.94%), Postives = 58/93 (62.37%), Query Frame = 3
Query:  264 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 539
            SIKPL DR++V+    E+ T  G+ +P +A+ KPQ GEVVAVG G+      ++ + V  G  V+YSKY GTE++  G   L++   DV+ I+
Sbjct:    4 SIKPLEDRIVVRQLDAEQTTASGLVIPDSAKEKPQEGEVVAVGPGRVDDNGNRVPVDVAVGDVVLYSKYGGTEVKTGGEELLVLSARDVLAIV 96          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_POLNA (10 kDa chaperonin OS=Polaromonas naphthalenivorans (strain CJ2) GN=groS PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.848e-13
Identity = 38/94 (40.43%), Postives = 62/94 (65.96%), Query Frame = 3
Query:  264 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLD-ISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            +++PL DRV+VK    E KT  GI +P +A  KP  GEV+AVG GK   K +L  ++VK G +V++ KY+G  ++ +G   L+++E+D+  ++E
Sbjct:    2 NLRPLHDRVIVKRVENETKTASGIVIPDSAAEKPDQGEVLAVGPGKKNDKGELGAMAVKVGDRVLFGKYSGQTVKVDGDELLVMKEEDLFAVVE 95          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_FERNB (10 kDa chaperonin OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=groS PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.848e-13
Identity = 38/92 (41.30%), Postives = 59/92 (64.13%), Query Frame = 3
Query:  267 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            +KPLG+R+L+K    E+KT GGI LP AA+ KP   E+V       VGK   D  +K G +VIY+KY+GTE++ +  +++I+   D++  +E
Sbjct:    3 VKPLGERLLIKPIIEEKKTAGGIVLPDAAKEKPMKAEIV------EVGKLPEDCQLKVGDKVIYNKYSGTEIKIDDEDYIIIDVSDILAKIE 88          
The following BLAST results are available for this feature:
BLAST of CX295592 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 489
Match NameE-valueIdentityDescription
CH10_WOLPM2.256e-1339.3610 kDa chaperonin OS=Wolbachia pipientis wMel GN=g... [more]
CH10_KOSOT2.256e-1340.0010 kDa chaperonin OS=Kosmotoga olearia (strain TBF... [more]
CH10_AMOPS2.256e-1339.7810 kDa chaperonin OS=Amoeba proteus symbiotic bact... [more]
CH10_ACIAC2.256e-1342.5510 kDa chaperonin OS=Acidovorax avenae subsp. citr... [more]
CH101_RHILO2.256e-1338.0410 kDa chaperonin 1 OS=Rhizobium loti GN=groS1 PE=... [more]
CH10_WOLWR2.947e-1339.3610 kDa chaperonin OS=Wolbachia sp. subsp. Drosophi... [more]
CH10_THEYD3.848e-1341.9410 kDa chaperonin OS=Thermodesulfovibrio yellowsto... [more]
CH10_RENSM3.848e-1341.9410 kDa chaperonin OS=Renibacterium salmoninarum (s... [more]
CH10_POLNA3.848e-1340.4310 kDa chaperonin OS=Polaromonas naphthalenivorans... [more]
CH10_FERNB3.848e-1341.3010 kDa chaperonin OS=Fervidobacterium nodosum (str... [more]

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Properties
Property NameValue
Genbank descriptionC05073H01SK DroRLeaf1 Citrus clementina cDNA clone C05073H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295592 ID=CX295592; Name=CX295592; organism=Citrus clementina; type=EST; length=685bp
GAGGAGAACCTTATCAACTACTCGCTCGCTTCTCGCTTATCATTTCCAAT
CAGAATCTCTCTCGCTCTCTCTGCATCTGCAAGCAGATGGCGACAGCTCA
GCTAACAGCGTCATCAATTAAGGTTCCAGCAAGGAGCTTGACTTCATTCG
ATGGTCTCAGACCGTCTTCCGTCAAGTTCGCTTCCGTCGGAGGTGCTGCC
AGCCAACGCTCTTTCCGTCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGC
TCCCAAGTACACTTCAATTAAACCTTTGGGTGATAGAGTGCTGGTGAAAA
TCAAGACTGTAGAGGAGAAAACTGATGGTGGTATTTTTCTGCCATCTGCA
GCTCAAACAAAGCCTCAAGCAGGTGAGGTGGTAGCTGTTGGCGAGGGGAA
GACAGTTGGGAAGGCTAAACTGGACATATCTGTGAAGCCTGGGACCCAGG
TCATCTATTCGAAGTATGCAGGGACTGAGTTGGAGTTCAACGGCGCAAAT
CATCTCATAGTGAGGGAGGATGACGTAGTTGGCATTCTTGAAACAGATGA
AATCAAGGATCTTAAGCCCCTTAATGACAGAGTTTTCATCAAGGTTGCTG
AGGCTGAGGAGACAACTGCTGGAGGTTTGTTGTTGACGGAGGCAAGCAAG
GAGAAAACTTCCATTGGAAACGTCATTGCTGTTGG
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