CX295592

Overview
NameCX295592
Unique NameCX295592
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_DIAST (10 kDa chaperonin OS=Diaphorobacter sp. (strain TPSY) GN=groS PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.848e-13
Identity = 39/94 (41.49%), Postives = 60/94 (63.83%), Query Frame = 3
Query:  264 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            +++PL DRV+VK    E  T  GI +P  A  KP  GEV+AVG GK   K +L  ++VK G +V++ KY+G  ++ NG   L+++EDD+  ++E
Sbjct:    2 NLRPLHDRVIVKRIESETTTASGIVIPDNAAEKPDQGEVLAVGPGKKNDKGELIALNVKVGDRVLFGKYSGQTVKVNGDELLVMKEDDLFAVVE 95          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_ALCBS (10 kDa chaperonin OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=groS PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.848e-13
Identity = 39/94 (41.49%), Postives = 59/94 (62.77%), Query Frame = 3
Query:  264 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            SI+PL DRVLV+ +  E K+ GGI LP +A  KP  GEV+AVG GK      +  + VK G  VI+ +Y+G+ ++  G   LI+ E +++ ++E
Sbjct:    2 SIRPLHDRVLVRREEEETKSAGGIVLPGSAAEKPSRGEVIAVGNGKITENGDVRPLDVKAGDTVIFGQYSGSTVKVEGEELLIMSEAEILAVVE 95          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_ACISJ (10 kDa chaperonin OS=Acidovorax sp. (strain JS42) GN=groS PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.848e-13
Identity = 39/94 (41.49%), Postives = 60/94 (63.83%), Query Frame = 3
Query:  264 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            +++PL DRV+VK    E  T  GI +P  A  KP  GEV+AVG GK   K +L  ++VK G +V++ KY+G  ++ NG   L+++EDD+  ++E
Sbjct:    2 NLRPLHDRVIVKRIESETTTASGIVIPDNAAEKPDQGEVLAVGPGKKNDKGELIALNVKVGDRVLFGKYSGQTVKVNGDELLVMKEDDLFAVVE 95          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_RHOFD (10 kDa chaperonin OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=groS PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.026e-13
Identity = 38/93 (40.86%), Postives = 60/93 (64.52%), Query Frame = 3
Query:  267 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLD-ISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            ++PL DRV+VK    E KT  GI +P +A  KP  GEV+AVG GK   K ++  ++VK G +V++ KY+G  ++  G   L+++EDD+  ++E
Sbjct:    3 LRPLHDRVIVKRVENETKTASGIVIPDSAAEKPDQGEVLAVGPGKKNDKGEISPMAVKVGDRVLFGKYSGQTVKVAGDELLVMKEDDLFAVVE 95          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_FINM2 (10 kDa chaperonin OS=Finegoldia magna (strain ATCC 29328) GN=groS PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.026e-13
Identity = 39/94 (41.49%), Postives = 64/94 (68.09%), Query Frame = 3
Query:  264 SIKPLGDR-VLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            ++KP+GDR VL K +  EEKT  GI LPS+A+  P   EV+A+G  +     K+  ++K G +VIYSKYAGTE++    ++++V+ +D++ ++E
Sbjct:    2 NLKPIGDRLVLKKQEKEEEKTFSGIVLPSSAKEAPVYAEVLAIGS-EVEEDEKMKGNIKVGDKVIYSKYAGTEIKLEDTDYILVKYEDILAVVE 94          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_DELAS (10 kDa chaperonin OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=groS PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.026e-13
Identity = 38/94 (40.43%), Postives = 61/94 (64.89%), Query Frame = 3
Query:  264 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            +++PL DRV+VK    E KT  GI +P  A  KP  GEV+AVG GK   K + + ++VK G +V++ KY+G  ++ +G   L+++EDD+  ++E
Sbjct:    2 NLRPLHDRVIVKRLENETKTASGIVIPENAAEKPDQGEVLAVGPGKKNDKGEVIALNVKVGDRVLFGKYSGQTVKVHGDELLVMKEDDLFAVVE 95          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH103_RHIME (10 kDa chaperonin 3 OS=Rhizobium meliloti GN=groS3 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.026e-13
Identity = 36/93 (38.71%), Postives = 61/93 (65.59%), Query Frame = 3
Query:  264 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 539
            + +PL DRV+++      ++ GGI +P  A+ KPQ GEV+AVG G      KL  + VK G  +++ K++GTE++ +G + LI++E D++GI+
Sbjct:    2 TFRPLLDRVVIRRAEGNTQSKGGIIIPDTAKEKPQEGEVIAVGPGSRDESGKLIPLDVKIGDTILFGKWSGTEVKIDGEDLLIMKESDIMGIV 94          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_TREPR (10 kDa chaperonin OS=Tremblaya princeps GN=groS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.564e-13
Identity = 37/95 (38.95%), Postives = 62/95 (65.26%), Query Frame = 3
Query:  261 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGK-AKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            + I+PLGDRV+VK    E KT  GI +P +A  K   G VVA+G GK   + A++ + V+ G +V++ KYAG  ++ +  + +++RE+D+V ++E
Sbjct:    2 SKIRPLGDRVVVKRSEDETKTPCGIVIPDSAAEKQDQGTVVALGPGKKDSEGARVPMEVRLGDRVLFGKYAGQSIKVDDEDLMVMREEDIVAVIE 96          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_THICR (10 kDa chaperonin OS=Thiomicrospira crunogena (strain XCL-2) GN=groS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.564e-13
Identity = 39/95 (41.05%), Postives = 63/95 (66.32%), Query Frame = 3
Query:  264 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGANHL-IVREDDVVGILE 542
            +IKPL DRV+V+    ++++ GGI LP +AQ K   GEVVAVG GK       + ++VK G +V++ +Y+G E++ +    L ++REDD++ I+E
Sbjct:    2 NIKPLHDRVVVRQVEEQKESTGGILLPGSAQEKENLGEVVAVGPGKAADNGSIIPMTVKVGDKVMFGQYSGQEVKDDAGKPLKVMREDDIIAIVE 96          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_MARMS (10 kDa chaperonin OS=Marinomonas sp. (strain MWYL1) GN=groS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.564e-13
Identity = 38/94 (40.43%), Postives = 60/94 (63.83%), Query Frame = 3
Query:  264 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLD-ISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            +I+PL DRV+V+ K  E  T  GI LP +A+ KP  GEV+AVG G+      +  ++VK G  V++ +Y+G  ++  G   LI++ED++ GI+E
Sbjct:    2 NIRPLHDRVVVRRKEEETTTASGIVLPGSAKEKPTQGEVLAVGTGRIQSNGDVQALAVKVGDTVLFGQYSGQTVKIEGDELLIMKEDEIYGIVE 95          
The following BLAST results are available for this feature:
BLAST of CX295592 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 489
Match NameE-valueIdentityDescription
CH10_DIAST3.848e-1341.4910 kDa chaperonin OS=Diaphorobacter sp. (strain TP... [more]
CH10_ALCBS3.848e-1341.4910 kDa chaperonin OS=Alcanivorax borkumensis (stra... [more]
CH10_ACISJ3.848e-1341.4910 kDa chaperonin OS=Acidovorax sp. (strain JS42) ... [more]
CH10_RHOFD5.026e-1340.8610 kDa chaperonin OS=Rhodoferax ferrireducens (str... [more]
CH10_FINM25.026e-1341.4910 kDa chaperonin OS=Finegoldia magna (strain ATCC... [more]
CH10_DELAS5.026e-1340.4310 kDa chaperonin OS=Delftia acidovorans (strain D... [more]
CH103_RHIME5.026e-1338.7110 kDa chaperonin 3 OS=Rhizobium meliloti GN=groS3... [more]
CH10_TREPR6.564e-1338.9510 kDa chaperonin OS=Tremblaya princeps GN=groS PE... [more]
CH10_THICR6.564e-1341.0510 kDa chaperonin OS=Thiomicrospira crunogena (str... [more]
CH10_MARMS6.564e-1340.4310 kDa chaperonin OS=Marinomonas sp. (strain MWYL1... [more]

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Properties
Property NameValue
Genbank descriptionC05073H01SK DroRLeaf1 Citrus clementina cDNA clone C05073H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295592 ID=CX295592; Name=CX295592; organism=Citrus clementina; type=EST; length=685bp
GAGGAGAACCTTATCAACTACTCGCTCGCTTCTCGCTTATCATTTCCAAT
CAGAATCTCTCTCGCTCTCTCTGCATCTGCAAGCAGATGGCGACAGCTCA
GCTAACAGCGTCATCAATTAAGGTTCCAGCAAGGAGCTTGACTTCATTCG
ATGGTCTCAGACCGTCTTCCGTCAAGTTCGCTTCCGTCGGAGGTGCTGCC
AGCCAACGCTCTTTCCGTCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGC
TCCCAAGTACACTTCAATTAAACCTTTGGGTGATAGAGTGCTGGTGAAAA
TCAAGACTGTAGAGGAGAAAACTGATGGTGGTATTTTTCTGCCATCTGCA
GCTCAAACAAAGCCTCAAGCAGGTGAGGTGGTAGCTGTTGGCGAGGGGAA
GACAGTTGGGAAGGCTAAACTGGACATATCTGTGAAGCCTGGGACCCAGG
TCATCTATTCGAAGTATGCAGGGACTGAGTTGGAGTTCAACGGCGCAAAT
CATCTCATAGTGAGGGAGGATGACGTAGTTGGCATTCTTGAAACAGATGA
AATCAAGGATCTTAAGCCCCTTAATGACAGAGTTTTCATCAAGGTTGCTG
AGGCTGAGGAGACAACTGCTGGAGGTTTGTTGTTGACGGAGGCAAGCAAG
GAGAAAACTTCCATTGGAAACGTCATTGCTGTTGG
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